Wall clock time and date at job start Wed Apr 1 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34264 * 126.29072 * 2 1 4 4 H 0.96999 * 125.75563 * 359.96471 * 3 2 1 5 5 N 1.39933 * 108.48958 * 180.24391 * 3 2 1 6 6 C 1.30441 * 108.89675 * 359.75345 * 5 3 2 7 7 C 1.50700 * 125.98934 * 180.02562 * 6 5 3 8 8 C 1.53007 * 109.46815 * 300.00109 * 7 6 5 9 9 C 1.53003 * 109.47333 * 59.99634 * 7 6 5 10 10 C 1.38038 * 126.29231 * 179.82298 * 2 1 3 11 11 C 1.47434 * 126.41393 * 0.02562 * 10 2 1 12 12 O 1.21600 * 120.00003 * 269.68690 * 11 10 2 13 13 N 1.34781 * 119.99837 * 89.68840 * 11 10 2 14 14 C 1.46499 * 119.99611 * 180.02562 * 13 11 10 15 15 H 1.08997 * 115.56887 * 9.28931 * 14 13 11 16 16 C 1.53040 * 117.49670 * 223.58139 * 14 13 11 17 17 C 1.52822 * 117.49888 * 154.99881 * 14 13 11 18 18 C 1.53178 * 117.71571 * 359.85967 * 17 14 13 19 19 C 1.53354 * 108.76913 * 158.87857 * 18 17 14 20 20 N 1.46839 * 108.81141 * 51.30384 * 19 18 17 21 21 C 1.36943 * 120.37901 * 123.11274 * 20 19 18 22 22 H 1.07999 * 119.99950 * 331.22649 * 21 20 19 23 23 C 1.38811 * 120.00018 * 151.22549 * 21 20 19 24 24 N 1.31614 * 120.00086 * 342.28730 * 23 21 20 25 25 Si 1.86795 * 119.99850 * 162.29129 * 23 21 20 26 26 H 1.48497 * 109.47278 * 269.99729 * 25 23 21 27 27 H 1.48506 * 109.47387 * 29.99734 * 25 23 21 28 28 H 1.48499 * 109.47414 * 150.00053 * 25 23 21 29 29 C 1.46844 * 119.24249 * 303.37737 * 20 19 18 30 30 C 1.52871 * 109.07030 * 56.58865 * 29 20 19 31 31 H 1.08998 * 109.47282 * 270.17798 * 1 2 3 32 32 H 1.09000 * 109.47167 * 30.17355 * 1 2 3 33 33 H 1.09000 * 109.46837 * 150.17369 * 1 2 3 34 34 H 1.08995 * 109.47794 * 179.97438 * 7 6 5 35 35 H 1.08988 * 109.47408 * 59.99970 * 8 7 6 36 36 H 1.09004 * 109.47102 * 180.02562 * 8 7 6 37 37 H 1.08998 * 109.46863 * 299.99530 * 8 7 6 38 38 H 1.08997 * 109.47319 * 180.02562 * 9 7 6 39 39 H 1.09004 * 109.46912 * 300.00497 * 9 7 6 40 40 H 1.08995 * 109.47129 * 60.00391 * 9 7 6 41 41 H 0.97000 * 119.99862 * 359.97438 * 13 11 10 42 42 H 1.09003 * 117.50143 * 145.04778 * 16 14 13 43 43 H 1.08991 * 117.53174 * 359.97438 * 16 14 13 44 44 H 1.09003 * 109.59144 * 39.08914 * 18 17 14 45 45 H 1.09007 * 109.58622 * 278.65860 * 18 17 14 46 46 H 1.08997 * 109.57212 * 291.50879 * 19 18 17 47 47 H 1.08995 * 109.58051 * 171.10607 * 19 18 17 48 48 H 0.96999 * 120.00333 * 180.02562 * 24 23 21 49 49 H 1.09000 * 109.57737 * 176.41847 * 29 20 19 50 50 H 1.08990 * 109.58155 * 296.82534 * 29 20 19 51 51 H 1.09009 * 109.66214 * 189.04410 * 30 29 20 52 52 H 1.09001 * 109.45030 * 68.65491 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0027 2.0050 -0.0005 5 7 3.6340 0.6544 -0.0056 6 6 3.6590 -0.6498 -0.0037 7 6 4.8951 -1.5118 -0.0077 8 6 5.7206 -1.2139 -1.2610 9 6 5.7314 -1.2100 1.2375 10 6 2.3241 -1.1126 0.0034 11 6 1.8858 -2.5203 0.0073 12 8 1.7102 -3.0995 1.0619 13 7 1.6798 -3.1651 -1.1582 14 6 1.2438 -4.5637 -1.1544 15 1 0.9568 -4.9643 -0.1822 16 6 1.9224 -5.5181 -2.1397 17 6 0.4811 -5.0684 -2.3788 18 6 0.2255 -4.0765 -3.5176 19 6 -0.0498 -4.8633 -4.8048 20 7 -1.0946 -5.8597 -4.5364 21 6 -2.2467 -5.8716 -5.2765 22 1 -2.6214 -4.9549 -5.7071 23 6 -2.9329 -7.0621 -5.4732 24 7 -2.3282 -8.2124 -5.2649 25 14 -4.7145 -7.0316 -6.0337 26 1 -5.6064 -7.0023 -4.8467 27 1 -4.9524 -5.8218 -6.8615 28 1 -5.0013 -8.2462 -6.8383 29 6 -0.8923 -6.8393 -3.4614 30 6 -0.6314 -6.0963 -2.1511 31 1 -0.3634 0.0032 1.0276 32 1 -0.3633 0.8884 -0.5165 33 1 -0.3633 -0.8915 -0.5111 34 1 4.6053 -2.5626 -0.0043 35 1 6.0104 -0.1632 -1.2639 36 1 6.6144 -1.8377 -1.2641 37 1 5.1248 -1.4289 -2.1480 38 1 6.6257 -1.8332 1.2344 39 1 6.0212 -0.1592 1.2345 40 1 5.1434 -1.4222 2.1303 41 1 1.8196 -2.7029 -1.9995 42 1 2.0816 -6.5466 -1.8156 43 1 2.6928 -5.1057 -2.7911 44 1 1.1030 -3.4449 -3.6561 45 1 -0.6385 -3.4574 -3.2760 46 1 0.8615 -5.3672 -5.1267 47 1 -0.3875 -4.1810 -5.5849 48 1 -2.8076 -9.0444 -5.4027 49 1 -1.7843 -7.4571 -3.3576 50 1 -0.0348 -7.4692 -3.6978 51 1 -0.3225 -6.8052 -1.3827 52 1 -1.5415 -5.5861 -1.8358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016917414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:38 Heat of formation + Delta-G solvation = 63.412439 kcal Electronic energy + Delta-G solvation = -31131.135349 eV Core-core repulsion = 27132.757001 eV Total energy + Delta-G solvation = -3998.378348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.76453 -39.65654 -38.16378 -36.02499 -35.44308 -33.11544 -32.36379 -31.63503 -30.87159 -29.99290 -28.30567 -27.57536 -27.36042 -24.34599 -23.58231 -23.44952 -22.44788 -21.47259 -20.58744 -19.84349 -19.33359 -18.26284 -17.97987 -16.72104 -16.46900 -15.97680 -15.28401 -15.12649 -14.83814 -14.72488 -14.38620 -14.10446 -14.01001 -13.60494 -13.51207 -13.42422 -13.28869 -13.07163 -12.93169 -12.80194 -12.62975 -12.37662 -12.22757 -11.72519 -11.63193 -11.59089 -11.45009 -11.34555 -11.28179 -10.95654 -10.83839 -10.74797 -10.42505 -10.31198 -10.02454 -9.95260 -9.67061 -9.66520 -9.61242 -9.33792 -8.85966 -8.45004 -8.41604 -6.64007 -5.78834 -3.22229 1.42477 2.19550 2.39913 2.54974 3.29053 3.37360 3.44550 3.45359 4.09713 4.20111 4.35335 4.49384 4.57213 4.77797 4.86673 4.92067 5.01465 5.11097 5.12019 5.16309 5.20458 5.24619 5.39251 5.43166 5.51029 5.52862 5.55240 5.61771 5.64507 5.67112 5.76573 5.90216 6.00679 6.01772 6.07656 6.09407 6.13008 6.21709 6.30014 6.45009 6.60938 6.63868 6.65361 6.72168 6.85023 6.86602 6.97018 7.32007 7.37856 7.57143 7.68017 7.79535 8.27373 8.46633 9.21980 9.85587 10.42139 11.28912 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.002443 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.764060 B =11456.720643 C =12029.615841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.134 3.866 3 N -0.464 5.464 4 H 0.441 0.559 5 N -0.290 5.290 6 C 0.127 3.873 7 C -0.019 4.019 8 C -0.142 4.142 9 C -0.142 4.142 10 C -0.282 4.282 11 C 0.600 3.400 12 O -0.537 6.537 13 N -0.687 5.687 14 C 0.069 3.931 15 H 0.132 0.868 16 C -0.182 4.182 17 C -0.097 4.097 18 C -0.097 4.097 19 C 0.150 3.850 20 N -0.589 5.589 21 C -0.254 4.254 22 H 0.064 0.936 23 C 0.003 3.997 24 N -0.900 5.900 25 Si 0.901 3.099 26 H -0.287 1.287 27 H -0.279 1.279 28 H -0.292 1.292 29 C 0.173 3.827 30 C -0.105 4.105 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.401 0.599 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.019 0.981 47 H 0.053 0.947 48 H 0.254 0.746 49 H 0.090 0.910 50 H 0.018 0.982 51 H 0.052 0.948 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.269 16.764 10.528 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 N -0.170 5.170 4 H 0.286 0.714 5 N -0.111 5.111 6 C -0.041 4.041 7 C -0.040 4.040 8 C -0.200 4.200 9 C -0.199 4.199 10 C -0.297 4.297 11 C 0.385 3.615 12 O -0.413 6.413 13 N -0.336 5.336 14 C -0.037 4.037 15 H 0.150 0.850 16 C -0.220 4.220 17 C -0.098 4.098 18 C -0.136 4.136 19 C 0.023 3.977 20 N -0.311 5.311 21 C -0.383 4.383 22 H 0.082 0.918 23 C -0.196 4.196 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.214 1.214 27 H -0.205 1.205 28 H -0.218 1.218 29 C 0.047 3.953 30 C -0.144 4.144 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.236 0.764 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.037 0.963 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.108 0.892 50 H 0.036 0.964 51 H 0.070 0.930 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.782 17.241 11.242 24.228 hybrid contribution -1.498 -0.004 -0.692 1.650 sum 11.284 17.236 10.550 23.146 Atomic orbital electron populations 1.20607 0.86305 1.04749 1.04305 1.21399 0.94507 0.86682 0.97286 1.45997 1.04110 1.08242 1.58652 0.71445 1.77034 0.95579 1.12465 1.26064 1.22245 0.93962 0.91117 0.96772 1.19694 0.89895 0.97375 0.96998 1.21814 0.99535 1.02330 0.96288 1.21799 0.99378 1.02196 0.96575 1.19887 0.93015 0.93398 1.23390 1.17239 0.76197 0.84510 0.83601 1.90773 1.51160 1.68056 1.31288 1.45454 1.67646 1.12127 1.08362 1.21932 1.03932 0.80882 0.96949 0.85004 1.23526 0.96343 0.99681 1.02487 1.21949 0.93104 0.99444 0.95302 1.21621 0.99532 0.96312 0.96155 1.20831 0.92022 0.91677 0.93129 1.43958 1.16525 1.34779 1.35878 1.19187 0.99004 0.92645 1.27493 0.91830 1.25044 0.99072 0.95440 1.00018 1.70031 1.35045 0.96614 1.52783 0.86316 0.85390 0.77013 0.78196 1.21438 1.20477 1.21792 1.20660 1.00747 0.90328 0.83564 1.21796 0.95771 0.96248 1.00628 0.89267 0.90259 0.88964 0.89362 0.91957 0.91763 0.92419 0.91809 0.92021 0.92365 0.76371 0.88332 0.89056 0.93651 0.91840 0.96313 0.92825 0.93623 0.89235 0.96404 0.92959 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.25 36.01 0.37 -0.37 16 2 C 0.13 1.30 7.29 -81.60 -0.60 0.71 16 3 N -0.46 -4.04 7.29 33.86 0.25 -3.79 16 4 H 0.44 2.29 8.96 -182.72 -1.64 0.65 16 5 N -0.29 -3.22 12.63 33.89 0.43 -2.79 16 6 C 0.13 1.46 5.77 -82.02 -0.47 0.99 16 7 C -0.02 -0.19 3.31 -91.77 -0.30 -0.50 16 8 C -0.14 -1.19 9.18 37.16 0.34 -0.85 16 9 C -0.14 -1.27 9.18 37.16 0.34 -0.93 16 10 C -0.28 -3.43 5.88 -105.07 -0.62 -4.04 16 11 C 0.60 8.39 6.67 -12.51 -0.08 8.31 16 12 O -0.54 -9.44 16.67 5.28 0.09 -9.36 16 13 N -0.69 -8.76 5.34 -54.95 -0.29 -9.05 16 14 C 0.07 0.98 6.14 -68.00 -0.42 0.57 16 15 H 0.13 2.06 7.40 -51.93 -0.38 1.67 16 16 C -0.18 -2.58 9.87 -26.78 -0.26 -2.85 16 17 C -0.10 -1.55 1.94 -154.49 -0.30 -1.85 16 18 C -0.10 -1.56 5.37 -26.46 -0.14 -1.70 16 19 C 0.15 3.01 6.52 -3.67 -0.02 2.99 16 20 N -0.59 -14.32 2.94 -172.56 -0.51 -14.83 16 21 C -0.25 -6.81 9.54 -15.06 -0.14 -6.96 16 22 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 23 C 0.00 0.08 4.89 -17.43 -0.09 0.00 16 24 N -0.90 -25.79 11.23 55.49 0.62 -25.17 16 25 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 C 0.17 4.01 5.37 -3.92 -0.02 3.99 16 30 C -0.10 -1.96 5.81 -26.71 -0.16 -2.11 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.78 7.96 -51.93 -0.41 0.37 16 34 H 0.09 0.95 7.56 -51.93 -0.39 0.56 16 35 H 0.06 0.53 8.14 -51.94 -0.42 0.11 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.40 4.53 7.10 -40.82 -0.29 4.24 16 42 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.04 0.61 6.75 -51.93 -0.35 0.25 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 48 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.09 2.35 5.94 -51.93 -0.31 2.04 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.05 0.88 8.10 -51.92 -0.42 0.46 16 52 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 417.87 15.07 6.30 6.30 Total: -1.00 -32.63 417.87 -10.80 -43.43 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -10.08 Total: 3.51 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.58 Total: -4.61 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.50 Total: -55.64 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.63 -10.80 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016917414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.840 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds