Wall clock time and date at job start Wed Apr 1 2020 03:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34264 * 126.29072 * 2 1 4 4 H 0.96999 * 125.75563 * 359.96471 * 3 2 1 5 5 N 1.39933 * 108.48958 * 180.24391 * 3 2 1 6 6 C 1.30441 * 108.89675 * 359.75345 * 5 3 2 7 7 C 1.50700 * 125.98934 * 180.02562 * 6 5 3 8 8 C 1.53007 * 109.46815 * 300.00109 * 7 6 5 9 9 C 1.53003 * 109.47333 * 59.99634 * 7 6 5 10 10 C 1.38038 * 126.29231 * 179.82298 * 2 1 3 11 11 C 1.47434 * 126.41393 * 0.02562 * 10 2 1 12 12 O 1.21600 * 120.00003 * 269.68690 * 11 10 2 13 13 N 1.34781 * 119.99837 * 89.68840 * 11 10 2 14 14 C 1.46499 * 119.99611 * 180.02562 * 13 11 10 15 15 H 1.08997 * 115.56887 * 9.28931 * 14 13 11 16 16 C 1.53040 * 117.49670 * 223.58139 * 14 13 11 17 17 C 1.52822 * 117.49888 * 154.99881 * 14 13 11 18 18 C 1.53178 * 117.71571 * 359.85967 * 17 14 13 19 19 C 1.53354 * 108.76913 * 158.87857 * 18 17 14 20 20 N 1.46839 * 108.81141 * 51.30384 * 19 18 17 21 21 C 1.36943 * 120.37901 * 123.11274 * 20 19 18 22 22 H 1.07999 * 119.99950 * 331.22649 * 21 20 19 23 23 C 1.38811 * 120.00018 * 151.22549 * 21 20 19 24 24 N 1.31614 * 120.00086 * 342.28730 * 23 21 20 25 25 Si 1.86795 * 119.99850 * 162.29129 * 23 21 20 26 26 H 1.48497 * 109.47278 * 269.99729 * 25 23 21 27 27 H 1.48506 * 109.47387 * 29.99734 * 25 23 21 28 28 H 1.48499 * 109.47414 * 150.00053 * 25 23 21 29 29 C 1.46844 * 119.24249 * 303.37737 * 20 19 18 30 30 C 1.52871 * 109.07030 * 56.58865 * 29 20 19 31 31 H 1.08998 * 109.47282 * 270.17798 * 1 2 3 32 32 H 1.09000 * 109.47167 * 30.17355 * 1 2 3 33 33 H 1.09000 * 109.46837 * 150.17369 * 1 2 3 34 34 H 1.08995 * 109.47794 * 179.97438 * 7 6 5 35 35 H 1.08988 * 109.47408 * 59.99970 * 8 7 6 36 36 H 1.09004 * 109.47102 * 180.02562 * 8 7 6 37 37 H 1.08998 * 109.46863 * 299.99530 * 8 7 6 38 38 H 1.08997 * 109.47319 * 180.02562 * 9 7 6 39 39 H 1.09004 * 109.46912 * 300.00497 * 9 7 6 40 40 H 1.08995 * 109.47129 * 60.00391 * 9 7 6 41 41 H 0.97000 * 119.99862 * 359.97438 * 13 11 10 42 42 H 1.09003 * 117.50143 * 145.04778 * 16 14 13 43 43 H 1.08991 * 117.53174 * 359.97438 * 16 14 13 44 44 H 1.09003 * 109.59144 * 39.08914 * 18 17 14 45 45 H 1.09007 * 109.58622 * 278.65860 * 18 17 14 46 46 H 1.08997 * 109.57212 * 291.50879 * 19 18 17 47 47 H 1.08995 * 109.58051 * 171.10607 * 19 18 17 48 48 H 0.96999 * 120.00333 * 180.02562 * 24 23 21 49 49 H 1.09000 * 109.57737 * 176.41847 * 29 20 19 50 50 H 1.08990 * 109.58155 * 296.82534 * 29 20 19 51 51 H 1.09009 * 109.66214 * 189.04410 * 30 29 20 52 52 H 1.09001 * 109.45030 * 68.65491 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0027 2.0050 -0.0005 5 7 3.6340 0.6544 -0.0056 6 6 3.6590 -0.6498 -0.0037 7 6 4.8951 -1.5118 -0.0077 8 6 5.7206 -1.2139 -1.2610 9 6 5.7314 -1.2100 1.2375 10 6 2.3241 -1.1126 0.0034 11 6 1.8858 -2.5203 0.0073 12 8 1.7102 -3.0995 1.0619 13 7 1.6798 -3.1651 -1.1582 14 6 1.2438 -4.5637 -1.1544 15 1 0.9568 -4.9643 -0.1822 16 6 1.9224 -5.5181 -2.1397 17 6 0.4811 -5.0684 -2.3788 18 6 0.2255 -4.0765 -3.5176 19 6 -0.0498 -4.8633 -4.8048 20 7 -1.0946 -5.8597 -4.5364 21 6 -2.2467 -5.8716 -5.2765 22 1 -2.6214 -4.9549 -5.7071 23 6 -2.9329 -7.0621 -5.4732 24 7 -2.3282 -8.2124 -5.2649 25 14 -4.7145 -7.0316 -6.0337 26 1 -5.6064 -7.0023 -4.8467 27 1 -4.9524 -5.8218 -6.8615 28 1 -5.0013 -8.2462 -6.8383 29 6 -0.8923 -6.8393 -3.4614 30 6 -0.6314 -6.0963 -2.1511 31 1 -0.3634 0.0032 1.0276 32 1 -0.3633 0.8884 -0.5165 33 1 -0.3633 -0.8915 -0.5111 34 1 4.6053 -2.5626 -0.0043 35 1 6.0104 -0.1632 -1.2639 36 1 6.6144 -1.8377 -1.2641 37 1 5.1248 -1.4289 -2.1480 38 1 6.6257 -1.8332 1.2344 39 1 6.0212 -0.1592 1.2345 40 1 5.1434 -1.4222 2.1303 41 1 1.8196 -2.7029 -1.9995 42 1 2.0816 -6.5466 -1.8156 43 1 2.6928 -5.1057 -2.7911 44 1 1.1030 -3.4449 -3.6561 45 1 -0.6385 -3.4574 -3.2760 46 1 0.8615 -5.3672 -5.1267 47 1 -0.3875 -4.1810 -5.5849 48 1 -2.8076 -9.0444 -5.4027 49 1 -1.7843 -7.4571 -3.3576 50 1 -0.0348 -7.4692 -3.6978 51 1 -0.3225 -6.8052 -1.3827 52 1 -1.5415 -5.5861 -1.8358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016917414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:37 Heat of formation + Delta-G solvation = 43.462193 kcal Electronic energy + Delta-G solvation = -31132.000457 eV Core-core repulsion = 27132.757001 eV Total energy + Delta-G solvation = -3999.243456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.57067 -40.86801 -39.47230 -37.08078 -36.74603 -34.46858 -33.43911 -32.99993 -31.85687 -31.50657 -29.91352 -28.33247 -28.02856 -26.21434 -24.52435 -24.26054 -23.99773 -22.91668 -21.95695 -20.84838 -20.08665 -19.77744 -18.92959 -18.26064 -17.60887 -17.23970 -16.69828 -16.07889 -15.92739 -15.71765 -15.56971 -15.39120 -15.21581 -15.07486 -14.89401 -14.70217 -14.23928 -14.13892 -14.02848 -13.76072 -13.55990 -13.37125 -13.27004 -13.08819 -13.00768 -12.85801 -12.58348 -12.51366 -12.45920 -12.23184 -12.14887 -12.04224 -11.97607 -11.76031 -11.65597 -11.36255 -11.25109 -11.08110 -10.67429 -10.45249 -10.41968 -9.69906 -9.64569 -8.59893 -7.83974 -5.30141 0.66149 1.34549 1.46875 1.47866 1.49636 1.57683 1.71431 2.24942 2.53193 2.97350 3.30877 3.36545 3.58717 3.67861 3.83584 3.88367 3.90970 3.99690 4.04113 4.14997 4.16509 4.21589 4.35978 4.48361 4.55873 4.58633 4.65609 4.76624 4.80356 4.85291 4.88057 4.94091 4.95608 4.96596 4.98579 4.99714 5.05271 5.10202 5.12687 5.19944 5.27758 5.34018 5.34839 5.41050 5.44861 5.52667 5.58965 5.68361 5.80886 6.25164 6.43530 6.52681 6.55722 7.18874 7.21432 7.91508 8.42257 9.21130 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.002443 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.764060 B =11456.720643 C =12029.615841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.147 3.853 3 N -0.450 5.450 4 H 0.457 0.543 5 N -0.305 5.305 6 C 0.121 3.879 7 C -0.023 4.023 8 C -0.135 4.135 9 C -0.137 4.137 10 C -0.314 4.314 11 C 0.608 3.392 12 O -0.577 6.577 13 N -0.675 5.675 14 C 0.086 3.914 15 H 0.121 0.879 16 C -0.170 4.170 17 C -0.112 4.112 18 C -0.082 4.082 19 C 0.145 3.855 20 N -0.608 5.608 21 C -0.261 4.261 22 H 0.065 0.935 23 C -0.050 4.050 24 N -0.933 5.933 25 Si 0.963 3.037 26 H -0.287 1.287 27 H -0.268 1.268 28 H -0.296 1.296 29 C 0.181 3.819 30 C -0.093 4.093 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.411 0.589 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.016 0.984 47 H 0.054 0.946 48 H 0.249 0.751 49 H 0.053 0.947 50 H -0.002 1.002 51 H 0.066 0.934 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.006 19.187 10.621 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.013 3.987 3 N -0.158 5.158 4 H 0.305 0.695 5 N -0.127 5.127 6 C -0.046 4.046 7 C -0.043 4.043 8 C -0.193 4.193 9 C -0.195 4.195 10 C -0.329 4.329 11 C 0.394 3.606 12 O -0.457 6.457 13 N -0.324 5.324 14 C -0.020 4.020 15 H 0.139 0.861 16 C -0.208 4.208 17 C -0.114 4.114 18 C -0.121 4.121 19 C 0.020 3.980 20 N -0.331 5.331 21 C -0.391 4.391 22 H 0.083 0.917 23 C -0.246 4.246 24 N -0.579 5.579 25 Si 0.791 3.209 26 H -0.214 1.214 27 H -0.193 1.193 28 H -0.223 1.223 29 C 0.055 3.945 30 C -0.133 4.133 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.248 0.752 42 H 0.119 0.881 43 H 0.127 0.873 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.034 0.966 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.071 0.929 50 H 0.016 0.984 51 H 0.085 0.915 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.542 19.733 11.315 26.472 hybrid contribution -1.706 -0.708 -0.719 1.983 sum 11.835 19.025 10.596 24.785 Atomic orbital electron populations 1.20714 0.84481 1.05716 1.05009 1.21693 0.95482 0.86200 0.95349 1.46013 1.03321 1.08972 1.57452 0.69526 1.76989 0.96795 1.12259 1.26681 1.22452 0.94207 0.91389 0.96594 1.19757 0.89900 0.96532 0.98114 1.21768 0.99761 1.02500 0.95292 1.21765 0.99649 1.02554 0.95531 1.19857 0.93920 0.92874 1.26277 1.17446 0.75088 0.85049 0.83001 1.90752 1.53041 1.69142 1.32721 1.45341 1.66954 1.11419 1.08699 1.21664 1.02854 0.81780 0.95705 0.86114 1.23611 0.95187 0.99988 1.02005 1.21787 0.93394 0.99596 0.96610 1.21436 1.00925 0.95940 0.93774 1.20992 0.90626 0.91017 0.95359 1.44219 1.17111 1.35641 1.36113 1.19509 1.00040 0.92619 1.26931 0.91697 1.25768 1.02639 0.95196 1.00975 1.70179 1.36307 0.96953 1.54504 0.85331 0.80898 0.76964 0.77657 1.21372 1.19260 1.22316 1.20417 0.98121 0.90269 0.85649 1.21548 0.96668 0.96818 0.98232 0.88625 0.87192 0.90064 0.90453 0.92118 0.90314 0.92621 0.90122 0.91979 0.93808 0.75184 0.88073 0.87312 0.90084 0.92259 0.96559 0.92770 0.94178 0.92910 0.98369 0.91509 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.25 71.24 0.73 -0.48 16 2 C 0.15 2.54 7.29 42.14 0.31 2.85 16 3 N -0.45 -6.76 7.29 -46.79 -0.34 -7.10 16 4 H 0.46 3.46 8.96 -213.43 -1.91 1.54 16 5 N -0.31 -6.25 12.63 -46.68 -0.59 -6.84 16 6 C 0.12 2.63 5.77 43.52 0.25 2.88 16 7 C -0.02 -0.42 3.31 -11.54 -0.04 -0.46 16 8 C -0.14 -2.03 9.18 71.98 0.66 -1.37 16 9 C -0.14 -2.31 9.18 71.98 0.66 -1.65 16 10 C -0.31 -7.18 5.88 -20.15 -0.12 -7.30 16 11 C 0.61 16.31 6.67 86.67 0.58 16.89 16 12 O -0.58 -20.12 16.67 -4.03 -0.07 -20.19 16 13 N -0.68 -15.89 5.34 -446.01 -2.38 -18.27 16 14 C 0.09 2.32 6.14 44.95 0.28 2.60 16 15 H 0.12 3.64 7.40 -2.39 -0.02 3.63 16 16 C -0.17 -4.44 9.87 30.56 0.30 -4.14 16 17 C -0.11 -3.43 1.94 -52.17 -0.10 -3.53 16 18 C -0.08 -2.46 5.37 30.77 0.17 -2.30 16 19 C 0.15 5.70 6.52 86.43 0.56 6.27 16 20 N -0.61 -29.83 2.94 -699.85 -2.06 -31.89 16 21 C -0.26 -14.14 9.54 84.03 0.80 -13.34 16 22 H 0.07 3.43 7.89 -2.91 -0.02 3.41 16 23 C -0.05 -2.79 4.89 84.86 0.41 -2.38 16 24 N -0.93 -55.08 11.23 21.65 0.24 -54.83 16 25 Si 0.96 44.60 29.59 68.60 2.03 46.63 16 26 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 28 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 29 C 0.18 8.63 5.37 86.27 0.46 9.09 16 30 C -0.09 -3.48 5.81 30.61 0.18 -3.30 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 1.20 7.96 -2.39 -0.02 1.18 16 34 H 0.08 1.60 7.56 -2.39 -0.02 1.58 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.41 8.11 7.10 -92.71 -0.66 7.45 16 42 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.08 1.87 6.75 -2.39 -0.02 1.86 16 45 H 0.06 1.85 8.14 -2.38 -0.02 1.84 16 46 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.05 2.08 7.92 -2.39 -0.02 2.06 16 48 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 49 H 0.05 2.89 5.94 -2.39 -0.01 2.87 16 50 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 51 H 0.07 2.25 8.10 -2.38 -0.02 2.23 16 52 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -72.21 417.87 1.29 -70.92 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -1.64 Total: 21.24 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 6.09 Total: 0.33 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -5.13 Total: -118.93 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.07 Total: -20.19 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -72.21 1.29 -70.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016917414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.386 kcal (2) G-P(sol) polarization free energy of solvation -72.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds