Wall clock time and date at job start Wed Apr 1 2020 04:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34667 * 125.99458 * 2 1 4 4 N 1.36882 * 106.81902 * 180.11819 * 3 2 1 5 5 C 1.46502 * 126.39517 * 179.84311 * 4 3 2 6 6 C 1.53004 * 109.46861 * 181.17434 * 5 4 3 7 7 C 1.52995 * 109.47244 * 61.17543 * 5 4 3 8 8 C 1.50702 * 109.47125 * 301.17349 * 5 4 3 9 9 O 1.21275 * 120.00280 * 353.85831 * 8 5 4 10 10 N 1.34773 * 119.99506 * 173.86007 * 8 5 4 11 11 C 1.46509 * 119.99736 * 179.97438 * 10 8 5 12 12 C 1.53152 * 109.43551 * 119.93150 * 11 10 8 13 13 C 1.54254 * 108.83897 * 66.08502 * 12 11 10 14 14 H 1.09004 * 112.32756 * 187.68668 * 13 12 11 15 15 C 1.54601 * 107.85888 * 312.47514 * 13 12 11 16 16 C 1.53803 * 104.85042 * 88.47317 * 15 13 12 17 17 C 1.54608 * 104.84715 * 359.97438 * 16 15 13 18 18 H 1.08994 * 112.69599 * 146.96568 * 17 16 15 19 19 C 1.53143 * 109.43737 * 240.15745 * 11 10 8 20 20 N 1.48293 * 106.99153 * 64.13571 * 13 12 11 21 21 C 1.36932 * 128.21455 * 107.51983 * 20 13 12 22 22 H 1.07999 * 120.00536 * 165.06756 * 21 20 13 23 23 C 1.38815 * 119.99899 * 345.07962 * 21 20 13 24 24 N 1.31620 * 120.00070 * 351.43872 * 23 21 20 25 25 Si 1.86801 * 119.99891 * 171.44105 * 23 21 20 26 26 H 1.48503 * 109.46826 * 179.97438 * 25 23 21 27 27 H 1.48496 * 109.47119 * 299.99632 * 25 23 21 28 28 H 1.48499 * 109.47209 * 60.00126 * 25 23 21 29 29 C 1.35042 * 107.20537 * 359.57931 * 4 3 2 30 30 N 1.30503 * 108.69812 * 0.26591 * 29 4 3 31 31 H 1.08996 * 109.47295 * 270.33515 * 1 2 3 32 32 H 1.09005 * 109.46473 * 30.33203 * 1 2 3 33 33 H 1.08997 * 109.47450 * 150.32427 * 1 2 3 34 34 H 1.08005 * 126.58979 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.46880 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.46915 * 299.99846 * 6 5 4 37 37 H 1.09003 * 109.46993 * 60.00103 * 6 5 4 38 38 H 1.09003 * 109.47093 * 299.99939 * 7 5 4 39 39 H 1.09002 * 109.47530 * 60.00021 * 7 5 4 40 40 H 1.09002 * 109.47222 * 179.97438 * 7 5 4 41 41 H 0.97001 * 120.00670 * 359.97438 * 10 8 5 42 42 H 1.09000 * 109.39489 * 0.04692 * 11 10 8 43 43 H 1.08989 * 109.57020 * 185.99485 * 12 11 10 44 44 H 1.09001 * 109.56955 * 306.36419 * 12 11 10 45 45 H 1.09002 * 110.38075 * 207.17522 * 15 13 12 46 46 H 1.08998 * 110.38682 * 329.42556 * 15 13 12 47 47 H 1.09000 * 110.42461 * 241.09993 * 16 15 13 48 48 H 1.08998 * 110.23400 * 118.79855 * 16 15 13 49 49 H 1.08997 * 109.56827 * 174.00471 * 19 11 10 50 50 H 1.08997 * 109.66967 * 53.69755 * 19 11 10 51 51 H 0.97001 * 120.00120 * 180.02562 * 24 23 21 52 52 H 1.07999 * 125.65008 * 180.29833 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6399 -0.0027 5 6 4.7997 1.4683 -0.0069 6 6 6.0356 0.5669 -0.0384 7 6 4.8304 2.3320 1.2555 8 6 4.7951 2.3572 -1.2238 9 8 3.9328 2.2272 -2.0666 10 7 5.7493 3.2968 -1.3755 11 6 5.7452 4.1607 -2.5588 12 6 5.6163 5.6229 -2.1218 13 6 6.8879 6.0251 -1.3467 14 1 6.8016 7.0126 -0.8934 15 6 7.1818 4.9165 -0.3100 16 6 8.0604 3.8999 -1.0584 17 6 8.2186 4.4844 -2.4809 18 1 9.1862 4.2523 -2.9258 19 6 7.0509 3.9675 -3.3354 20 7 8.0207 5.9432 -2.3002 21 6 8.7212 6.9706 -2.8736 22 1 9.6671 6.7757 -3.3569 23 6 8.2156 8.2628 -2.8335 24 7 6.9924 8.4777 -2.3975 25 14 9.2712 9.6967 -3.3983 26 1 8.5050 10.9610 -3.2574 27 1 10.4988 9.7658 -2.5656 28 1 9.6485 9.5032 -4.8215 29 6 3.5449 -0.7097 0.0052 30 7 2.2951 -1.0853 0.0067 31 1 -0.3634 0.0060 1.0276 32 1 -0.3632 0.8871 -0.5190 33 1 -0.3634 -0.8928 -0.5088 34 1 1.9752 2.1201 -0.0004 35 1 6.9347 1.1832 -0.0421 36 1 6.0389 -0.0760 0.8417 37 1 6.0138 -0.0484 -0.9379 38 1 3.9498 2.9741 1.2780 39 1 4.8338 1.6890 2.1357 40 1 5.7297 2.9479 1.2526 41 1 6.4389 3.4011 -0.7013 42 1 4.9015 3.8970 -3.1965 43 1 5.5060 6.2581 -3.0005 44 1 4.7455 5.7355 -1.4759 45 1 7.7232 5.3275 0.5421 46 1 6.2538 4.4497 0.0201 47 1 7.5672 2.9288 -1.1000 48 1 9.0325 3.8125 -0.5732 49 1 7.0062 4.5271 -4.2696 50 1 7.1967 2.9089 -3.5504 51 1 6.6390 9.3806 -2.3698 52 1 4.4003 -1.3689 0.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021294471.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:36 Heat of formation + Delta-G solvation = 129.052522 kcal Electronic energy + Delta-G solvation = -32981.498477 eV Core-core repulsion = 28985.966496 eV Total energy + Delta-G solvation = -3995.531981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.36816 -41.23847 -38.78940 -35.95952 -34.39788 -32.38323 -31.94628 -31.19439 -30.70057 -30.30448 -29.09691 -28.19342 -26.29020 -25.11297 -23.96759 -23.45813 -22.14255 -20.99653 -20.23272 -19.82174 -19.71957 -19.38042 -17.87661 -16.88131 -16.85700 -15.53216 -15.17039 -15.00316 -14.63453 -14.32007 -14.19174 -14.04991 -13.93688 -13.51048 -13.31632 -13.25678 -13.07408 -13.00233 -12.75676 -12.69760 -12.60971 -12.36240 -12.25283 -12.06599 -12.01805 -11.75946 -11.69518 -11.68607 -11.07287 -10.99033 -10.75278 -10.54831 -10.42167 -10.15855 -10.01610 -9.91191 -9.80708 -9.64218 -9.48732 -9.32103 -8.74524 -8.38846 -8.23886 -6.95359 -5.88223 -3.24088 2.05315 2.51278 2.64189 3.14601 3.31513 3.35581 3.37359 3.37925 4.17241 4.33817 4.36123 4.55485 4.57433 4.76300 4.95852 5.01866 5.15565 5.19457 5.20703 5.22787 5.27508 5.32463 5.40063 5.46667 5.49332 5.55742 5.62071 5.66561 5.70083 5.70209 5.84811 5.87279 5.90421 6.00051 6.01866 6.15522 6.31173 6.36295 6.37504 6.42693 6.48622 6.63406 6.75383 6.80414 6.86727 6.95773 7.17607 7.36967 7.42177 7.61844 7.66112 8.10191 8.12008 8.28827 9.01186 9.63397 10.40041 11.23827 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024744 B = 0.002826 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.297943 B = 9904.936453 C =10274.618977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.015 4.015 3 C -0.021 4.021 4 N -0.433 5.433 5 C 0.140 3.860 6 C -0.159 4.159 7 C -0.160 4.160 8 C 0.491 3.509 9 O -0.533 6.533 10 N -0.726 5.726 11 C 0.142 3.858 12 C -0.124 4.124 13 C 0.181 3.819 14 H 0.116 0.884 15 C -0.176 4.176 16 C -0.163 4.163 17 C 0.150 3.850 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.582 5.582 21 C -0.227 4.227 22 H 0.075 0.925 23 C -0.003 4.003 24 N -0.912 5.912 25 Si 0.911 3.089 26 H -0.290 1.290 27 H -0.285 1.285 28 H -0.285 1.285 29 C 0.179 3.821 30 N -0.491 5.491 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.166 0.834 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.427 0.573 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.047 0.953 51 H 0.255 0.745 52 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 -13.628 8.537 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.143 4.143 3 C -0.154 4.154 4 N -0.116 5.116 5 C 0.051 3.949 6 C -0.217 4.217 7 C -0.218 4.218 8 C 0.273 3.727 9 O -0.410 6.410 10 N -0.399 5.399 11 C 0.039 3.961 12 C -0.164 4.164 13 C 0.074 3.926 14 H 0.133 0.867 15 C -0.215 4.215 16 C -0.202 4.202 17 C 0.042 3.958 18 H 0.088 0.912 19 C -0.178 4.178 20 N -0.303 5.303 21 C -0.355 4.355 22 H 0.093 0.907 23 C -0.200 4.200 24 N -0.558 5.558 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.212 1.212 28 H -0.211 1.211 29 C -0.103 4.103 30 N -0.210 5.210 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.183 0.817 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.288 0.712 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.066 0.934 51 H 0.065 0.935 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.848 -14.115 7.907 16.630 hybrid contribution 1.128 1.670 -0.198 2.025 sum -2.720 -12.445 7.710 14.890 Atomic orbital electron populations 1.19964 0.87954 1.02452 1.01710 1.20608 0.96344 0.88491 1.08838 1.22276 0.82748 1.00268 1.10150 1.45155 1.05570 1.07014 1.53887 1.20817 0.85414 0.92344 0.96282 1.22170 0.95061 1.00157 1.04315 1.22263 1.04329 0.99931 0.95235 1.20534 0.83175 0.81864 0.87081 1.90729 1.37401 1.69836 1.43004 1.49058 1.30078 1.34119 1.26648 1.21158 0.98453 0.90689 0.85850 1.22477 0.98787 0.92879 1.02223 1.21646 0.86246 0.96979 0.87734 0.86678 1.23382 0.98406 0.99270 1.00464 1.23211 0.99908 0.97872 0.99215 1.21519 0.95745 0.86630 0.91938 0.91225 1.22498 0.96125 0.99324 0.99870 1.45152 1.37040 0.98726 1.49360 1.18937 0.99951 0.85745 1.30895 0.90678 1.24833 0.96081 0.97772 1.01300 1.69817 1.14043 1.20314 1.51619 0.86222 0.79336 0.81818 0.78481 1.21601 1.21197 1.21097 1.24767 0.97019 0.81844 1.06691 1.70143 1.00318 1.30442 1.20089 0.91837 0.91545 0.91471 0.81667 0.89441 0.89920 0.90518 0.90813 0.90337 0.89831 0.71226 0.89917 0.89550 0.93861 0.91962 0.90726 0.90699 0.91851 0.90650 0.93388 0.93504 0.78284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.42 36.00 0.38 -0.31 16 2 C -0.01 -0.21 7.09 -82.85 -0.59 -0.79 16 3 C -0.02 -0.29 9.83 -16.56 -0.16 -0.46 16 4 N -0.43 -5.45 2.36 -105.82 -0.25 -5.70 16 5 C 0.14 1.53 1.08 -132.97 -0.14 1.38 16 6 C -0.16 -1.26 7.33 37.16 0.27 -0.99 16 7 C -0.16 -1.42 8.39 37.16 0.31 -1.11 16 8 C 0.49 7.15 6.41 -10.99 -0.07 7.07 16 9 O -0.53 -9.99 14.92 5.56 0.08 -9.90 16 10 N -0.73 -10.32 2.62 -53.65 -0.14 -10.46 16 11 C 0.14 2.47 3.15 -67.77 -0.21 2.25 16 12 C -0.12 -2.43 5.45 -26.00 -0.14 -2.58 16 13 C 0.18 3.72 3.19 -65.45 -0.21 3.51 16 14 H 0.12 2.78 6.27 -51.93 -0.33 2.45 16 15 C -0.18 -2.75 5.73 -25.47 -0.15 -2.89 16 16 C -0.16 -2.35 5.74 -25.47 -0.15 -2.50 16 17 C 0.15 2.70 4.32 -65.74 -0.28 2.42 16 18 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 19 C -0.14 -2.38 5.49 -26.32 -0.14 -2.53 16 20 N -0.58 -12.95 2.82 -152.45 -0.43 -13.38 16 21 C -0.23 -5.75 10.38 -15.06 -0.16 -5.90 16 22 H 0.08 1.86 7.84 -52.49 -0.41 1.45 16 23 C 0.00 -0.07 5.43 -17.43 -0.09 -0.16 16 24 N -0.91 -24.30 10.65 55.49 0.59 -23.71 16 25 Si 0.91 20.74 29.56 -169.99 -5.03 15.71 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 29 C 0.18 2.23 11.50 -90.37 -1.04 1.19 16 30 N -0.49 -7.27 11.25 -10.87 -0.12 -7.39 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.17 2.12 8.06 -52.48 -0.42 1.70 16 35 H 0.09 0.60 7.04 -51.93 -0.37 0.23 16 36 H 0.08 0.47 7.81 -51.93 -0.41 0.07 16 37 H 0.08 0.64 7.92 -51.93 -0.41 0.23 16 38 H 0.07 0.71 7.97 -51.93 -0.41 0.30 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.66 6.15 -51.93 -0.32 0.34 16 41 H 0.43 5.40 1.11 -65.56 -0.07 5.32 16 42 H 0.08 1.57 6.89 -51.93 -0.36 1.21 16 43 H 0.09 2.00 8.09 -51.94 -0.42 1.58 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.08 1.02 4.02 -51.93 -0.21 0.81 16 47 H 0.08 0.92 4.28 -51.93 -0.22 0.70 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 50 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 52 H 0.20 1.76 7.15 -52.49 -0.38 1.38 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -31.17 386.78 -10.14 -41.31 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -8.10 Total: 10.08 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.58 Total: -2.38 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.35 Total: -60.64 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.17 -10.14 -41.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021294471.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.364 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds