Wall clock time and date at job start Wed Apr 1 2020 03:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30834 * 125.90344 * 2 1 4 4 N 1.40082 * 108.20896 * 179.97438 * 3 2 1 5 5 H 0.97001 * 126.03686 * 180.02562 * 4 3 2 6 6 C 1.34950 * 107.92556 * 359.75863 * 4 3 2 7 7 C 1.50700 * 126.12644 * 180.23988 * 6 4 3 8 8 C 1.35320 * 107.74391 * 0.39158 * 6 4 3 9 9 C 1.50699 * 126.03867 * 179.87819 * 8 6 4 10 10 H 1.09002 * 109.46901 * 359.70740 * 9 8 6 11 11 C 1.52992 * 109.47503 * 119.71088 * 9 8 6 12 12 C 1.50706 * 109.46779 * 239.71296 * 9 8 6 13 13 O 1.21284 * 119.99655 * 359.97438 * 12 9 8 14 14 N 1.34768 * 119.99829 * 179.97438 * 12 9 8 15 15 C 1.46498 * 120.00053 * 179.97438 * 14 12 9 16 16 C 1.53147 * 109.43732 * 119.84597 * 15 14 12 17 17 C 1.55652 * 108.76066 * 65.85872 * 16 15 14 18 18 H 1.09004 * 112.42636 * 187.55746 * 17 16 15 19 19 C 1.54604 * 108.45543 * 312.85482 * 17 16 15 20 20 C 1.53785 * 104.85225 * 87.89968 * 19 17 16 21 21 C 1.54611 * 104.85178 * 359.97438 * 20 19 17 22 22 H 1.09003 * 112.19399 * 146.68151 * 21 20 19 23 23 C 1.53147 * 109.43379 * 240.06639 * 15 14 12 24 24 N 1.48295 * 106.26895 * 64.44058 * 17 16 15 25 25 C 1.36936 * 128.21156 * 107.15352 * 24 17 16 26 26 H 1.08005 * 119.99747 * 164.61743 * 25 24 17 27 27 C 1.38807 * 120.00290 * 344.62361 * 25 24 17 28 28 N 1.31620 * 119.99966 * 351.64885 * 27 25 24 29 29 Si 1.86799 * 120.00247 * 171.64568 * 27 25 24 30 30 H 1.48505 * 109.47110 * 269.99832 * 29 27 25 31 31 H 1.48499 * 109.47354 * 29.99969 * 29 27 25 32 32 H 1.48495 * 109.47057 * 150.00104 * 29 27 25 33 33 H 1.09003 * 109.47605 * 270.02257 * 1 2 3 34 34 H 1.08997 * 109.47119 * 30.02942 * 1 2 3 35 35 H 1.09003 * 109.46959 * 150.02315 * 1 2 3 36 36 H 1.08998 * 109.46799 * 270.17376 * 7 6 4 37 37 H 1.09000 * 109.47372 * 30.17624 * 7 6 4 38 38 H 1.08998 * 109.46813 * 150.18070 * 7 6 4 39 39 H 1.08998 * 109.47156 * 59.99432 * 11 9 8 40 40 H 1.08999 * 109.47085 * 179.97438 * 11 9 8 41 41 H 1.09007 * 109.47295 * 299.99644 * 11 9 8 42 42 H 0.97006 * 120.00485 * 359.97438 * 14 12 9 43 43 H 1.09000 * 109.39821 * 359.95399 * 15 14 12 44 44 H 1.08996 * 109.56824 * 185.99476 * 16 15 14 45 45 H 1.08995 * 109.56645 * 306.35599 * 16 15 14 46 46 H 1.08999 * 110.37728 * 206.61002 * 19 17 16 47 47 H 1.09006 * 110.37702 * 328.85260 * 19 17 16 48 48 H 1.09000 * 110.43606 * 241.09967 * 20 19 17 49 49 H 1.08997 * 110.24191 * 118.79971 * 20 19 17 50 50 H 1.09006 * 109.57238 * 174.00118 * 23 15 14 51 51 H 1.08999 * 109.66978 * 53.70152 * 23 15 14 52 52 H 0.96998 * 120.00333 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 1 4.3908 1.2078 0.0011 6 6 3.6142 -0.7155 0.0064 7 6 4.8350 -1.5990 0.0141 8 6 2.3271 -1.1331 0.0005 9 6 1.8598 -2.5658 0.0013 10 1 2.7242 -3.2299 0.0020 11 6 1.0154 -2.8263 1.2502 12 6 1.0293 -2.8239 -1.2295 13 8 0.8355 -1.9320 -2.0283 14 7 0.5019 -4.0457 -1.4425 15 6 -0.3060 -4.2964 -2.6386 16 6 0.3486 -5.4011 -3.4733 17 6 0.2991 -6.7325 -2.6686 18 1 0.8649 -7.5304 -3.1496 19 6 0.7752 -6.4499 -1.2251 20 6 -0.4946 -6.0296 -0.4663 21 6 -1.6252 -6.0949 -1.5189 22 1 -2.5780 -6.3936 -1.0819 23 6 -1.7138 -4.7311 -2.2208 24 7 -1.1361 -7.0746 -2.5194 25 6 -1.8412 -8.0639 -3.1513 26 1 -2.8080 -8.3633 -2.7741 27 6 -1.3135 -8.6820 -4.2766 28 7 -0.2178 -8.2109 -4.8333 29 14 -2.1582 -10.1825 -5.0007 30 1 -1.6083 -11.4111 -4.3733 31 1 -3.6178 -10.1036 -4.7387 32 1 -1.9199 -10.2258 -6.4658 33 1 -0.3634 0.0004 1.0277 34 1 -0.3633 0.8897 -0.5143 35 1 -0.3633 -0.8902 -0.5135 36 1 5.1345 -1.8139 -1.0117 37 1 5.6485 -1.0902 0.5312 38 1 4.6049 -2.5321 0.5284 39 1 0.1511 -2.1622 1.2494 40 1 0.6771 -3.8625 1.2504 41 1 1.6162 -2.6397 2.1404 42 1 0.6572 -4.7591 -0.8039 43 1 -0.3690 -3.3835 -3.2308 44 1 -0.1903 -5.5160 -4.4137 45 1 1.3872 -5.1392 -3.6753 46 1 1.1985 -7.3513 -0.7818 47 1 1.5090 -5.6439 -1.2184 48 1 -0.3908 -5.0142 -0.0838 49 1 -0.6941 -6.7247 0.3492 50 1 -2.3471 -4.8153 -3.1040 51 1 -2.1370 -3.9954 -1.5369 52 1 0.1508 -8.6426 -5.6198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021412417.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:00 Heat of formation + Delta-G solvation = 123.015617 kcal Electronic energy + Delta-G solvation = -32870.609769 eV Core-core repulsion = 28874.816009 eV Total energy + Delta-G solvation = -3995.793760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.58910 -40.83419 -38.33360 -34.30265 -34.12552 -33.36693 -32.13713 -31.30048 -30.35844 -29.95044 -28.90370 -28.01845 -26.84909 -24.96273 -23.96021 -23.31394 -21.65102 -20.38291 -20.18001 -19.64394 -19.52837 -18.82071 -17.62604 -16.88316 -16.53403 -15.30667 -15.12404 -14.94157 -14.65369 -14.19813 -14.04761 -13.71705 -13.57821 -13.40955 -13.15310 -12.96219 -12.89507 -12.82547 -12.56494 -12.48896 -12.40001 -12.29397 -12.03340 -11.80372 -11.70744 -11.53720 -11.49645 -11.35006 -10.94698 -10.90172 -10.63200 -10.39977 -10.34211 -10.25015 -10.01206 -9.72058 -9.49254 -9.36169 -9.22900 -9.19682 -8.61857 -8.37496 -8.11040 -6.82746 -5.78929 -3.14286 1.82191 2.71205 2.81793 3.07332 3.36924 3.43170 3.44510 3.82681 4.44351 4.51598 4.61735 4.84336 4.92660 5.07337 5.14783 5.18497 5.26656 5.32871 5.37758 5.42301 5.45644 5.59769 5.62242 5.64696 5.67427 5.68881 5.73774 5.82956 5.88304 5.96683 6.03187 6.05999 6.08571 6.10475 6.17750 6.18795 6.33591 6.52789 6.57929 6.61547 6.69674 6.70469 6.81503 6.91682 7.03873 7.18376 7.25608 7.51948 7.55262 7.71747 7.72942 8.04199 8.21045 8.72489 9.11103 9.73167 10.51406 11.33179 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.002832 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.951208 B = 9885.086107 C =10098.965216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.115 3.885 3 N -0.304 5.304 4 N -0.481 5.481 5 H 0.435 0.565 6 C 0.088 3.912 7 C -0.095 4.095 8 C -0.207 4.207 9 C -0.034 4.034 10 H 0.096 0.904 11 C -0.145 4.145 12 C 0.500 3.500 13 O -0.543 6.543 14 N -0.737 5.737 15 C 0.143 3.857 16 C -0.123 4.123 17 C 0.181 3.819 18 H 0.113 0.887 19 C -0.170 4.170 20 C -0.161 4.161 21 C 0.150 3.850 22 H 0.066 0.934 23 C -0.136 4.136 24 N -0.584 5.584 25 C -0.223 4.223 26 H 0.075 0.925 27 C -0.004 4.004 28 N -0.911 5.911 29 Si 0.910 3.090 30 H -0.290 1.290 31 H -0.282 1.282 32 H -0.292 1.292 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.424 0.576 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.040 0.960 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.059 0.941 50 H 0.071 0.929 51 H 0.047 0.953 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.027 11.399 13.475 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 N -0.128 5.128 4 N -0.188 5.188 5 H 0.278 0.722 6 C -0.040 4.040 7 C -0.153 4.153 8 C -0.219 4.219 9 C -0.056 4.056 10 H 0.114 0.886 11 C -0.203 4.203 12 C 0.285 3.715 13 O -0.421 6.421 14 N -0.408 5.408 15 C 0.039 3.961 16 C -0.163 4.163 17 C 0.074 3.926 18 H 0.130 0.870 19 C -0.209 4.209 20 C -0.200 4.200 21 C 0.042 3.958 22 H 0.084 0.916 23 C -0.176 4.176 24 N -0.305 5.305 25 C -0.352 4.352 26 H 0.093 0.907 27 C -0.201 4.201 28 N -0.558 5.558 29 Si 0.740 3.260 30 H -0.217 1.217 31 H -0.207 1.207 32 H -0.218 1.218 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.283 0.717 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.097 0.903 49 H 0.078 0.922 50 H 0.090 0.910 51 H 0.066 0.934 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.883 13.040 12.712 19.844 hybrid contribution 0.196 -1.519 -0.324 1.566 sum 8.079 11.521 12.388 18.747 Atomic orbital electron populations 1.20332 0.87004 1.04347 1.01962 1.22022 0.96788 0.89755 0.96583 1.77263 0.86323 1.22348 1.26826 1.46028 1.07327 1.04569 1.60915 0.72185 1.20778 0.96661 0.85127 1.01428 1.20490 0.92835 0.98375 1.03635 1.19072 0.91110 0.94716 1.16991 1.19553 0.98649 0.93148 0.94289 0.88628 1.21860 1.00219 1.02064 0.96134 1.20687 0.80238 0.83423 0.87125 1.90646 1.60115 1.44561 1.46805 1.48912 1.52087 1.12893 1.26937 1.21048 0.90184 0.98976 0.85937 1.22683 0.98438 0.95354 0.99805 1.21918 0.86449 0.95011 0.89268 0.86964 1.23250 0.96642 1.00312 1.00724 1.23177 0.97442 1.00221 0.99163 1.21515 0.95084 0.89279 0.89956 0.91594 1.22462 0.96046 0.98028 1.01105 1.45182 1.05047 1.33622 1.46689 1.18982 1.01462 1.09173 1.05551 0.90745 1.24831 0.98497 1.00133 0.96671 1.69845 1.22544 1.40800 1.22562 0.86160 0.78793 0.82829 0.78190 1.21697 1.20714 1.21786 0.91137 0.91221 0.89372 0.89992 0.91117 0.89492 0.91608 0.91879 0.91617 0.71720 0.90078 0.89876 0.94109 0.92250 0.90707 0.90265 0.92174 0.90988 0.93414 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 8.57 36.00 0.31 -0.69 16 2 C 0.12 1.64 6.53 -82.41 -0.54 1.11 16 3 N -0.30 -4.38 12.70 33.67 0.43 -3.96 16 4 N -0.48 -5.39 7.36 33.48 0.25 -5.15 16 5 H 0.43 3.35 8.96 -182.61 -1.64 1.71 16 6 C 0.09 0.98 7.21 -82.26 -0.59 0.38 16 7 C -0.09 -0.68 10.06 36.01 0.36 -0.31 16 8 C -0.21 -2.69 4.36 -105.05 -0.46 -3.15 16 9 C -0.03 -0.40 2.88 -92.93 -0.27 -0.67 16 10 H 0.10 0.95 6.79 -51.93 -0.35 0.60 16 11 C -0.15 -1.40 8.95 37.15 0.33 -1.07 16 12 C 0.50 7.63 6.19 -10.99 -0.07 7.56 16 13 O -0.54 -10.24 13.19 5.55 0.07 -10.17 16 14 N -0.74 -11.21 2.75 -53.66 -0.15 -11.36 16 15 C 0.14 2.59 3.15 -67.78 -0.21 2.38 16 16 C -0.12 -2.54 5.49 -25.24 -0.14 -2.68 16 17 C 0.18 3.88 3.23 -64.69 -0.21 3.68 16 18 H 0.11 2.81 6.29 -51.93 -0.33 2.49 16 19 C -0.17 -2.85 5.75 -25.48 -0.15 -2.99 16 20 C -0.16 -2.49 5.75 -25.48 -0.15 -2.64 16 21 C 0.15 2.83 4.27 -65.75 -0.28 2.55 16 22 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 23 C -0.14 -2.45 5.50 -26.33 -0.14 -2.60 16 24 N -0.58 -13.51 2.79 -151.62 -0.42 -13.94 16 25 C -0.22 -5.81 10.38 -15.06 -0.16 -5.97 16 26 H 0.07 1.90 7.84 -52.48 -0.41 1.49 16 27 C 0.00 -0.11 5.43 -17.43 -0.09 -0.21 16 28 N -0.91 -24.93 10.60 55.49 0.59 -24.34 16 29 Si 0.91 21.21 29.56 -169.99 -5.03 16.18 16 30 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 31 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 32 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 33 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.24 5.30 -51.93 -0.28 0.97 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.53 7.14 -51.93 -0.37 0.16 16 39 H 0.06 0.66 6.15 -51.93 -0.32 0.34 16 40 H 0.06 0.55 6.48 -51.93 -0.34 0.22 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.42 5.87 1.47 -58.26 -0.09 5.79 16 43 H 0.08 1.60 6.89 -51.93 -0.36 1.24 16 44 H 0.08 2.00 8.05 -51.93 -0.42 1.59 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.08 1.12 5.35 -51.93 -0.28 0.84 16 48 H 0.08 1.07 4.12 -51.93 -0.21 0.85 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 51 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -31.83 382.49 -10.11 -41.94 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -9.16 Total: 10.33 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -2.45 Total: -5.31 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.69 Total: -58.73 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.83 -10.11 -41.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021412417.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.952 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds