Wall clock time and date at job start Wed Apr 1 2020 03:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30834 * 125.90344 * 2 1 4 4 N 1.40082 * 108.20896 * 179.97438 * 3 2 1 5 5 H 0.97001 * 126.03686 * 180.02562 * 4 3 2 6 6 C 1.34950 * 107.92556 * 359.75863 * 4 3 2 7 7 C 1.50700 * 126.12644 * 180.23988 * 6 4 3 8 8 C 1.35320 * 107.74391 * 0.39158 * 6 4 3 9 9 C 1.50699 * 126.03867 * 179.87819 * 8 6 4 10 10 H 1.09002 * 109.46901 * 359.70740 * 9 8 6 11 11 C 1.52992 * 109.47503 * 119.71088 * 9 8 6 12 12 C 1.50706 * 109.46779 * 239.71296 * 9 8 6 13 13 O 1.21284 * 119.99655 * 359.97438 * 12 9 8 14 14 N 1.34768 * 119.99829 * 179.97438 * 12 9 8 15 15 C 1.46498 * 120.00053 * 179.97438 * 14 12 9 16 16 C 1.53147 * 109.43732 * 119.84597 * 15 14 12 17 17 C 1.55652 * 108.76066 * 65.85872 * 16 15 14 18 18 H 1.09004 * 112.42636 * 187.55746 * 17 16 15 19 19 C 1.54604 * 108.45543 * 312.85482 * 17 16 15 20 20 C 1.53785 * 104.85225 * 87.89968 * 19 17 16 21 21 C 1.54611 * 104.85178 * 359.97438 * 20 19 17 22 22 H 1.09003 * 112.19399 * 146.68151 * 21 20 19 23 23 C 1.53147 * 109.43379 * 240.06639 * 15 14 12 24 24 N 1.48295 * 106.26895 * 64.44058 * 17 16 15 25 25 C 1.36936 * 128.21156 * 107.15352 * 24 17 16 26 26 H 1.08005 * 119.99747 * 164.61743 * 25 24 17 27 27 C 1.38807 * 120.00290 * 344.62361 * 25 24 17 28 28 N 1.31620 * 119.99966 * 351.64885 * 27 25 24 29 29 Si 1.86799 * 120.00247 * 171.64568 * 27 25 24 30 30 H 1.48505 * 109.47110 * 269.99832 * 29 27 25 31 31 H 1.48499 * 109.47354 * 29.99969 * 29 27 25 32 32 H 1.48495 * 109.47057 * 150.00104 * 29 27 25 33 33 H 1.09003 * 109.47605 * 270.02257 * 1 2 3 34 34 H 1.08997 * 109.47119 * 30.02942 * 1 2 3 35 35 H 1.09003 * 109.46959 * 150.02315 * 1 2 3 36 36 H 1.08998 * 109.46799 * 270.17376 * 7 6 4 37 37 H 1.09000 * 109.47372 * 30.17624 * 7 6 4 38 38 H 1.08998 * 109.46813 * 150.18070 * 7 6 4 39 39 H 1.08998 * 109.47156 * 59.99432 * 11 9 8 40 40 H 1.08999 * 109.47085 * 179.97438 * 11 9 8 41 41 H 1.09007 * 109.47295 * 299.99644 * 11 9 8 42 42 H 0.97006 * 120.00485 * 359.97438 * 14 12 9 43 43 H 1.09000 * 109.39821 * 359.95399 * 15 14 12 44 44 H 1.08996 * 109.56824 * 185.99476 * 16 15 14 45 45 H 1.08995 * 109.56645 * 306.35599 * 16 15 14 46 46 H 1.08999 * 110.37728 * 206.61002 * 19 17 16 47 47 H 1.09006 * 110.37702 * 328.85260 * 19 17 16 48 48 H 1.09000 * 110.43606 * 241.09967 * 20 19 17 49 49 H 1.08997 * 110.24191 * 118.79971 * 20 19 17 50 50 H 1.09006 * 109.57238 * 174.00118 * 23 15 14 51 51 H 1.08999 * 109.66978 * 53.70152 * 23 15 14 52 52 H 0.96998 * 120.00333 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 1 4.3908 1.2078 0.0011 6 6 3.6142 -0.7155 0.0064 7 6 4.8350 -1.5990 0.0141 8 6 2.3271 -1.1331 0.0005 9 6 1.8598 -2.5658 0.0013 10 1 2.7242 -3.2299 0.0020 11 6 1.0154 -2.8263 1.2502 12 6 1.0293 -2.8239 -1.2295 13 8 0.8355 -1.9320 -2.0283 14 7 0.5019 -4.0457 -1.4425 15 6 -0.3060 -4.2964 -2.6386 16 6 0.3486 -5.4011 -3.4733 17 6 0.2991 -6.7325 -2.6686 18 1 0.8649 -7.5304 -3.1496 19 6 0.7752 -6.4499 -1.2251 20 6 -0.4946 -6.0296 -0.4663 21 6 -1.6252 -6.0949 -1.5189 22 1 -2.5780 -6.3936 -1.0819 23 6 -1.7138 -4.7311 -2.2208 24 7 -1.1361 -7.0746 -2.5194 25 6 -1.8412 -8.0639 -3.1513 26 1 -2.8080 -8.3633 -2.7741 27 6 -1.3135 -8.6820 -4.2766 28 7 -0.2178 -8.2109 -4.8333 29 14 -2.1582 -10.1825 -5.0007 30 1 -1.6083 -11.4111 -4.3733 31 1 -3.6178 -10.1036 -4.7387 32 1 -1.9199 -10.2258 -6.4658 33 1 -0.3634 0.0004 1.0277 34 1 -0.3633 0.8897 -0.5143 35 1 -0.3633 -0.8902 -0.5135 36 1 5.1345 -1.8139 -1.0117 37 1 5.6485 -1.0902 0.5312 38 1 4.6049 -2.5321 0.5284 39 1 0.1511 -2.1622 1.2494 40 1 0.6771 -3.8625 1.2504 41 1 1.6162 -2.6397 2.1404 42 1 0.6572 -4.7591 -0.8039 43 1 -0.3690 -3.3835 -3.2308 44 1 -0.1903 -5.5160 -4.4137 45 1 1.3872 -5.1392 -3.6753 46 1 1.1985 -7.3513 -0.7818 47 1 1.5090 -5.6439 -1.2184 48 1 -0.3908 -5.0142 -0.0838 49 1 -0.6941 -6.7247 0.3492 50 1 -2.3471 -4.8153 -3.1040 51 1 -2.1370 -3.9954 -1.5369 52 1 0.1508 -8.6426 -5.6198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021412417.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:59 Heat of formation + Delta-G solvation = 103.972087 kcal Electronic energy + Delta-G solvation = -32871.435559 eV Core-core repulsion = 28874.816009 eV Total energy + Delta-G solvation = -3996.619550 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.64166 -42.10927 -39.64429 -35.74893 -35.27012 -34.24057 -33.83157 -32.66674 -31.77162 -31.13853 -30.48725 -28.92881 -27.61036 -26.57272 -25.14356 -24.81427 -23.09892 -21.63663 -21.19327 -21.05442 -20.94802 -19.98326 -18.95913 -18.29933 -17.61963 -16.76532 -16.33495 -16.15571 -16.02670 -15.73278 -15.17776 -14.82469 -14.65325 -14.53200 -14.46891 -14.40150 -14.10752 -13.90999 -13.69372 -13.59358 -13.43855 -13.27510 -13.19665 -13.14727 -13.04197 -12.85477 -12.77673 -12.60188 -12.43024 -12.32546 -12.18336 -11.99705 -11.86280 -11.63361 -11.37936 -11.27459 -11.12662 -10.96042 -10.52230 -10.45183 -10.11568 -9.51386 -9.26580 -8.69266 -7.78911 -5.13545 0.95855 1.49609 1.50346 1.58076 1.73839 1.89266 2.04266 2.53892 2.60218 3.38487 3.60769 3.71325 3.80973 3.90049 3.99686 4.04697 4.22464 4.25477 4.29555 4.32618 4.35992 4.40897 4.46966 4.52825 4.59032 4.60706 4.74085 4.77333 4.78351 4.85235 4.88184 4.97387 5.02241 5.06378 5.08555 5.13389 5.18187 5.19864 5.25385 5.30131 5.34399 5.36453 5.43488 5.51948 5.59743 5.66793 5.78333 5.87076 5.92473 6.33057 6.51911 6.79885 6.82176 7.14808 7.51720 7.81598 8.61289 9.31471 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.002832 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.951208 B = 9885.086107 C =10098.965216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.096 3.904 3 N -0.341 5.341 4 N -0.475 5.475 5 H 0.448 0.552 6 C 0.098 3.902 7 C -0.095 4.095 8 C -0.235 4.235 9 C -0.025 4.025 10 H 0.122 0.878 11 C -0.144 4.144 12 C 0.500 3.500 13 O -0.581 6.581 14 N -0.726 5.726 15 C 0.157 3.843 16 C -0.113 4.113 17 C 0.174 3.826 18 H 0.072 0.928 19 C -0.159 4.159 20 C -0.147 4.147 21 C 0.141 3.859 22 H 0.070 0.930 23 C -0.129 4.129 24 N -0.606 5.606 25 C -0.228 4.228 26 H 0.075 0.925 27 C -0.058 4.058 28 N -0.935 5.935 29 Si 0.967 3.033 30 H -0.288 1.288 31 H -0.274 1.274 32 H -0.301 1.301 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.432 0.568 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.068 0.932 47 H 0.099 0.901 48 H 0.108 0.892 49 H 0.080 0.920 50 H 0.043 0.957 51 H 0.074 0.926 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.183 11.468 16.738 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.070 4.070 3 N -0.165 5.165 4 N -0.184 5.184 5 H 0.294 0.706 6 C -0.032 4.032 7 C -0.153 4.153 8 C -0.246 4.246 9 C -0.047 4.047 10 H 0.140 0.860 11 C -0.202 4.202 12 C 0.288 3.712 13 O -0.461 6.461 14 N -0.399 5.399 15 C 0.051 3.949 16 C -0.153 4.153 17 C 0.067 3.933 18 H 0.090 0.910 19 C -0.198 4.198 20 C -0.186 4.186 21 C 0.034 3.966 22 H 0.089 0.911 23 C -0.169 4.169 24 N -0.327 5.327 25 C -0.358 4.358 26 H 0.093 0.907 27 C -0.252 4.252 28 N -0.583 5.583 29 Si 0.797 3.203 30 H -0.216 1.216 31 H -0.199 1.199 32 H -0.228 1.228 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.293 0.707 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.116 0.884 48 H 0.126 0.874 49 H 0.099 0.901 50 H 0.062 0.938 51 H 0.093 0.907 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.041 13.126 16.028 22.604 hybrid contribution -0.137 -1.452 -1.379 2.007 sum 8.904 11.674 14.649 20.741 Atomic orbital electron populations 1.20299 0.86828 1.03161 1.03006 1.22301 0.97358 0.90479 0.96846 1.77180 0.87771 1.23226 1.28351 1.46091 1.06945 1.05216 1.60143 0.70626 1.21389 0.97552 0.85194 0.99051 1.20669 0.91810 0.98514 1.04335 1.19313 0.91745 0.94970 1.18595 1.19581 0.99070 0.93114 0.92958 0.86022 1.21902 0.99973 1.02715 0.95596 1.21406 0.79636 0.82400 0.87782 1.90645 1.61316 1.45652 1.48472 1.48717 1.51841 1.13522 1.25787 1.20635 0.90572 0.96919 0.86749 1.22488 0.97905 0.96514 0.98406 1.21825 0.85657 0.93680 0.92092 0.91035 1.23139 0.97762 1.01791 0.97132 1.23096 0.94795 1.02506 0.98225 1.21779 0.96701 0.88184 0.89919 0.91145 1.22363 0.95490 0.98578 1.00475 1.45396 1.05953 1.34131 1.47263 1.19277 1.01521 1.09558 1.05420 0.90712 1.25500 0.99464 1.02700 0.97560 1.70046 1.23818 1.41757 1.22680 0.85246 0.78267 0.80092 0.76689 1.21553 1.19871 1.22837 0.88953 0.92041 0.90780 0.89807 0.88628 0.87836 0.92292 0.90481 0.89675 0.70731 0.91816 0.94442 0.94125 0.91331 0.88363 0.87411 0.90143 0.93804 0.90733 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.85 8.57 71.23 0.61 -1.24 16 2 C 0.10 2.63 6.53 43.10 0.28 2.91 16 3 N -0.34 -9.55 12.70 -47.39 -0.60 -10.15 16 4 N -0.47 -9.78 7.36 -48.00 -0.35 -10.14 16 5 H 0.45 6.06 8.96 -213.33 -1.91 4.15 16 6 C 0.10 1.89 7.21 41.41 0.30 2.18 16 7 C -0.10 -0.97 10.06 71.24 0.72 -0.26 16 8 C -0.23 -5.52 4.36 -20.14 -0.09 -5.61 16 9 C -0.02 -0.50 2.88 -12.29 -0.04 -0.54 16 10 H 0.12 1.81 6.79 -2.39 -0.02 1.79 16 11 C -0.14 -2.16 8.95 71.98 0.64 -1.51 16 12 C 0.50 14.17 6.19 87.66 0.54 14.72 16 13 O -0.58 -21.55 13.19 -3.04 -0.04 -21.59 16 14 N -0.73 -20.34 2.75 -442.07 -1.22 -21.56 16 15 C 0.16 5.66 3.15 45.09 0.14 5.80 16 16 C -0.11 -4.81 5.49 31.56 0.17 -4.64 16 17 C 0.17 7.56 3.23 46.11 0.15 7.71 16 18 H 0.07 3.71 6.29 -2.39 -0.02 3.70 16 19 C -0.16 -4.91 5.75 31.40 0.18 -4.72 16 20 C -0.15 -4.02 5.75 31.41 0.18 -3.83 16 21 C 0.14 5.10 4.27 45.40 0.19 5.29 16 22 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 23 C -0.13 -4.56 5.50 30.86 0.17 -4.39 16 24 N -0.61 -28.17 2.79 -633.61 -1.77 -29.94 16 25 C -0.23 -12.07 10.38 84.03 0.87 -11.20 16 26 H 0.08 3.84 7.84 -2.91 -0.02 3.82 16 27 C -0.06 -3.16 5.43 84.86 0.46 -2.70 16 28 N -0.93 -53.42 10.60 21.65 0.23 -53.19 16 29 Si 0.97 44.65 29.56 68.60 2.03 46.67 16 30 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 31 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 32 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 33 H 0.09 1.78 7.92 -2.39 -0.02 1.77 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 2.04 5.30 -2.39 -0.01 2.02 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.10 0.75 7.14 -2.39 -0.02 0.74 16 39 H 0.06 0.98 6.15 -2.39 -0.01 0.96 16 40 H 0.08 0.93 6.48 -2.39 -0.02 0.91 16 41 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.43 10.34 1.47 -109.09 -0.16 10.18 16 43 H 0.06 2.56 6.89 -2.39 -0.02 2.55 16 44 H 0.04 1.91 8.05 -2.39 -0.02 1.89 16 45 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.10 2.57 5.35 -2.38 -0.01 2.56 16 48 H 0.11 2.36 4.12 -2.39 -0.01 2.35 16 49 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 51 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 52 H 0.24 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -73.57 382.49 2.66 -70.90 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -1.11 Total: 31.01 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.49 Total: -2.03 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -3.71 Total: -124.97 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.04 Total: -21.59 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -73.57 2.66 -70.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021412417.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.876 kcal (2) G-P(sol) polarization free energy of solvation -73.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds