Wall clock time and date at job start Wed Apr 1 2020 03:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34262 * 126.29001 * 2 1 4 4 H 0.96996 * 125.75496 * 0.03091 * 3 2 1 5 5 N 1.39940 * 108.48985 * 180.24127 * 3 2 1 6 6 C 1.30444 * 108.89921 * 359.74987 * 5 3 2 7 7 C 1.50700 * 125.98996 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.46895 * 299.97426 * 7 6 5 9 9 C 1.52998 * 109.46954 * 59.97767 * 7 6 5 10 10 C 1.38044 * 126.29354 * 179.81753 * 2 1 3 11 11 C 1.47430 * 126.41381 * 0.02706 * 10 2 1 12 12 O 1.21602 * 119.99613 * 269.68554 * 11 10 2 13 13 N 1.34771 * 120.00139 * 89.40822 * 11 10 2 14 14 C 1.46498 * 120.00065 * 180.27602 * 13 11 10 15 15 C 1.53157 * 109.43508 * 119.96372 * 14 13 11 16 16 C 1.53700 * 108.87495 * 66.17402 * 15 14 13 17 17 H 1.09000 * 112.09593 * 188.25305 * 16 15 14 18 18 C 1.54610 * 107.83479 * 312.22856 * 16 15 14 19 19 C 1.54317 * 104.74840 * 88.67280 * 18 16 15 20 20 C 1.54603 * 104.75261 * 359.97438 * 19 18 16 21 21 H 1.09002 * 112.19286 * 146.79978 * 20 19 18 22 22 C 1.53144 * 109.43528 * 240.13942 * 14 13 11 23 23 N 1.48294 * 107.27526 * 64.01314 * 16 15 14 24 24 C 1.36939 * 128.21297 * 107.37263 * 23 16 15 25 25 H 1.07996 * 120.00035 * 15.34505 * 24 23 16 26 26 C 1.38809 * 119.99825 * 195.35144 * 24 23 16 27 27 N 1.31621 * 120.00049 * 9.24133 * 26 24 23 28 28 Si 1.86801 * 119.99891 * 189.23736 * 26 24 23 29 29 H 1.48501 * 109.46800 * 89.99824 * 28 26 24 30 30 H 1.48498 * 109.47153 * 209.99761 * 28 26 24 31 31 H 1.48496 * 109.47316 * 330.00235 * 28 26 24 32 32 H 1.08995 * 109.47171 * 270.18060 * 1 2 3 33 33 H 1.09006 * 109.46757 * 30.18159 * 1 2 3 34 34 H 1.08994 * 109.46980 * 150.17825 * 1 2 3 35 35 H 1.09001 * 109.46601 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46586 * 179.97438 * 8 7 6 37 37 H 1.08994 * 109.47360 * 299.99985 * 8 7 6 38 38 H 1.08999 * 109.46884 * 60.00461 * 8 7 6 39 39 H 1.09001 * 109.47006 * 59.99681 * 9 7 6 40 40 H 1.08996 * 109.46737 * 179.97438 * 9 7 6 41 41 H 1.08994 * 109.46728 * 300.00027 * 9 7 6 42 42 H 0.97003 * 120.00210 * 0.27996 * 13 11 10 43 43 H 1.08993 * 109.43728 * 0.05066 * 14 13 11 44 44 H 1.08991 * 109.56815 * 185.99270 * 15 14 13 45 45 H 1.08997 * 109.56728 * 306.35821 * 15 14 13 46 46 H 1.08999 * 110.38078 * 207.48680 * 18 16 15 47 47 H 1.09003 * 110.38302 * 329.74250 * 18 16 15 48 48 H 1.08997 * 110.38547 * 118.81799 * 19 18 16 49 49 H 1.09007 * 110.37690 * 241.18383 * 19 18 16 50 50 H 1.09000 * 109.57235 * 53.64457 * 22 14 13 51 51 H 1.09005 * 109.57061 * 174.00738 * 22 14 13 52 52 H 0.97011 * 119.99557 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0027 2.0049 0.0004 5 7 3.6341 0.6544 -0.0056 6 6 3.6591 -0.6498 -0.0035 7 6 4.8952 -1.5118 -0.0074 8 6 5.7204 -1.2144 -1.2610 9 6 5.7317 -1.2094 1.2375 10 6 2.3241 -1.1126 0.0035 11 6 1.8859 -2.5203 0.0075 12 8 1.7103 -3.0994 1.0622 13 7 1.6745 -3.1635 -1.1578 14 6 1.2332 -4.5604 -1.1539 15 6 -0.1186 -4.6698 -1.8655 16 6 0.0726 -4.3269 -3.3515 17 1 -0.8777 -4.2476 -3.8795 18 6 0.8973 -3.0218 -3.4340 19 6 2.3687 -3.4867 -3.4424 20 6 2.2947 -5.0289 -3.3635 21 1 3.1065 -5.5086 -3.9105 22 6 2.2688 -5.4240 -1.8799 23 7 0.9648 -5.3602 -3.9306 24 6 0.6381 -6.3791 -4.7852 25 1 -0.3054 -6.3617 -5.3105 26 6 1.5196 -7.4342 -4.9763 27 7 2.5813 -7.5523 -4.2073 28 14 1.1989 -8.6866 -6.3247 29 1 1.8518 -8.2391 -7.5812 30 1 1.7543 -10.0030 -5.9199 31 1 -0.2641 -8.8131 -6.5450 32 1 -0.3633 0.0032 1.0276 33 1 -0.3633 0.8884 -0.5167 34 1 -0.3633 -0.8915 -0.5110 35 1 4.6053 -2.5625 -0.0040 36 1 6.6147 -1.8376 -1.2635 37 1 5.1245 -1.4298 -2.1478 38 1 6.0102 -0.1637 -1.2643 39 1 5.1437 -1.4213 2.1305 40 1 6.6255 -1.8332 1.2349 41 1 6.0214 -0.1587 1.2340 42 1 1.8146 -2.7016 -1.9992 43 1 1.1305 -4.9054 -0.1251 44 1 -0.4993 -5.6867 -1.7715 45 1 -0.8246 -3.9708 -1.4173 46 1 0.6642 -2.4829 -4.3523 47 1 0.7010 -2.3931 -2.5654 48 1 2.8596 -3.1765 -4.3648 49 1 2.8978 -3.0876 -2.5769 50 1 3.2533 -5.2591 -1.4420 51 1 1.9973 -6.4756 -1.7865 52 1 3.1974 -8.2895 -4.3412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021432156.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:23 Heat of formation + Delta-G solvation = 119.852461 kcal Electronic energy + Delta-G solvation = -33151.876804 eV Core-core repulsion = 29155.945879 eV Total energy + Delta-G solvation = -3995.930925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.66519 -40.74360 -37.95711 -35.80984 -34.08390 -32.32990 -32.07825 -31.43992 -30.60820 -30.17817 -28.94691 -27.40094 -27.14507 -24.67084 -23.34017 -23.28860 -22.81359 -21.00270 -19.98307 -19.56667 -19.11984 -19.00716 -17.85980 -17.01886 -16.43448 -15.26924 -14.92554 -14.86380 -14.79371 -14.49195 -14.19629 -14.02689 -13.64516 -13.43126 -13.17142 -13.07476 -12.88955 -12.76525 -12.75388 -12.61745 -12.16940 -12.06615 -12.04816 -11.63865 -11.56739 -11.47868 -11.23454 -11.08600 -10.94734 -10.90538 -10.65277 -10.60100 -10.35213 -10.26518 -10.03077 -9.76256 -9.47955 -9.47024 -9.38738 -9.34801 -8.66634 -8.59327 -8.11615 -6.83319 -5.78681 -3.13650 1.61431 2.43212 2.59207 2.95453 3.37566 3.43724 3.45127 3.85515 4.30113 4.44951 4.57931 4.74736 4.94796 5.13905 5.15426 5.17735 5.22801 5.33772 5.42931 5.45492 5.46393 5.62106 5.64387 5.64564 5.66550 5.73915 5.82312 5.83643 5.87442 5.89508 6.00020 6.03876 6.04244 6.19805 6.21843 6.23827 6.35032 6.42948 6.55467 6.57675 6.60241 6.67724 6.81154 6.90978 7.03799 7.05213 7.18294 7.51747 7.53116 7.55800 7.73458 8.02940 8.21086 8.68936 9.11425 9.73637 10.52011 11.33727 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.003472 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.587746 B = 8061.976115 C = 8757.301247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.124 3.876 3 N -0.466 5.466 4 H 0.439 0.561 5 N -0.291 5.291 6 C 0.126 3.874 7 C -0.020 4.020 8 C -0.142 4.142 9 C -0.141 4.141 10 C -0.274 4.274 11 C 0.577 3.423 12 O -0.551 6.551 13 N -0.727 5.727 14 C 0.140 3.860 15 C -0.137 4.137 16 C 0.150 3.850 17 H 0.067 0.933 18 C -0.161 4.161 19 C -0.173 4.173 20 C 0.184 3.816 21 H 0.110 0.890 22 C -0.123 4.123 23 N -0.583 5.583 24 C -0.225 4.225 25 H 0.075 0.925 26 C -0.003 4.003 27 N -0.910 5.910 28 Si 0.909 3.091 29 H -0.290 1.290 30 H -0.291 1.291 31 H -0.282 1.282 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.428 0.572 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.058 0.942 47 H 0.078 0.922 48 H 0.057 0.943 49 H 0.079 0.921 50 H 0.043 0.957 51 H 0.085 0.915 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 16.811 7.083 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.008 4.008 3 N -0.172 5.172 4 H 0.283 0.717 5 N -0.113 5.113 6 C -0.042 4.042 7 C -0.041 4.041 8 C -0.200 4.200 9 C -0.198 4.198 10 C -0.289 4.289 11 C 0.362 3.638 12 O -0.429 6.429 13 N -0.399 5.399 14 C 0.036 3.964 15 C -0.177 4.177 16 C 0.042 3.958 17 H 0.085 0.915 18 C -0.200 4.200 19 C -0.213 4.213 20 C 0.077 3.923 21 H 0.128 0.872 22 C -0.163 4.163 23 N -0.304 5.304 24 C -0.353 4.353 25 H 0.092 0.908 26 C -0.200 4.200 27 N -0.556 5.556 28 Si 0.740 3.260 29 H -0.217 1.217 30 H -0.218 1.218 31 H -0.207 1.207 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.288 0.712 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.076 0.924 49 H 0.096 0.904 50 H 0.062 0.938 51 H 0.104 0.896 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.823 17.206 7.620 18.836 hybrid contribution -0.820 -0.635 -0.911 1.380 sum 0.002 16.571 6.710 17.878 Atomic orbital electron populations 1.20565 0.86607 1.04437 1.04093 1.21347 0.94387 0.86788 0.98301 1.45961 1.04152 1.08077 1.59052 0.71684 1.77011 0.95506 1.12564 1.26206 1.22266 0.94138 0.91059 0.96730 1.19699 0.89867 0.97587 0.96901 1.21820 0.99663 1.02112 0.96442 1.21789 0.99401 1.02020 0.96632 1.20075 0.92906 0.93957 1.21952 1.17558 0.76844 0.84643 0.84789 1.90725 1.52173 1.67981 1.32058 1.49124 1.66567 1.14532 1.09670 1.21115 0.94660 0.80315 1.00271 1.22502 0.95569 1.01697 0.97967 1.21512 0.93886 0.88756 0.91632 0.91488 1.23265 0.96823 0.99302 1.00632 1.23437 0.95400 1.01681 1.00758 1.21445 0.90996 0.88122 0.91769 0.87181 1.22331 0.95997 1.00352 0.97617 1.45157 1.02604 1.30488 1.52113 1.18975 1.03510 0.97110 1.15721 0.90753 1.24820 0.98404 0.97438 0.99332 1.69865 1.14678 1.32278 1.38810 0.86173 0.77543 0.80773 0.81556 1.21700 1.21766 1.20729 0.89465 0.90474 0.89152 0.89179 0.91700 0.92235 0.92114 0.92459 0.91828 0.92141 0.71223 0.89898 0.90825 0.93492 0.92336 0.90465 0.92375 0.90363 0.93788 0.89641 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.25 36.01 0.37 -0.45 16 2 C 0.12 1.41 7.29 -81.60 -0.60 0.81 16 3 N -0.47 -4.76 7.29 33.86 0.25 -4.52 16 4 H 0.44 2.83 8.96 -182.72 -1.64 1.20 16 5 N -0.29 -3.76 12.63 33.90 0.43 -3.33 16 6 C 0.13 1.74 5.77 -82.02 -0.47 1.27 16 7 C -0.02 -0.25 3.31 -91.77 -0.30 -0.56 16 8 C -0.14 -1.58 9.18 37.16 0.34 -1.24 16 9 C -0.14 -1.57 9.18 37.16 0.34 -1.23 16 10 C -0.27 -3.96 5.88 -105.06 -0.62 -4.58 16 11 C 0.58 9.68 6.67 -12.52 -0.08 9.60 16 12 O -0.55 -11.15 16.43 5.28 0.09 -11.06 16 13 N -0.73 -11.75 2.77 -54.73 -0.15 -11.90 16 14 C 0.14 2.58 3.15 -67.78 -0.21 2.37 16 15 C -0.14 -2.47 5.49 -26.29 -0.14 -2.61 16 16 C 0.15 2.86 4.32 -65.73 -0.28 2.58 16 17 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.16 -2.61 5.75 -25.20 -0.14 -2.76 16 19 C -0.17 -3.05 5.76 -25.20 -0.15 -3.19 16 20 C 0.18 3.99 3.13 -65.79 -0.21 3.78 16 21 H 0.11 2.78 6.36 -51.93 -0.33 2.45 16 22 C -0.12 -2.55 5.39 -26.37 -0.14 -2.69 16 23 N -0.58 -13.53 2.82 -152.82 -0.43 -13.96 16 24 C -0.22 -5.86 10.38 -15.06 -0.16 -6.01 16 25 H 0.07 1.90 7.85 -52.49 -0.41 1.49 16 26 C 0.00 -0.07 5.42 -17.43 -0.09 -0.17 16 27 N -0.91 -24.87 10.59 55.49 0.59 -24.29 16 28 Si 0.91 21.20 29.56 -169.99 -5.03 16.17 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 30 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 31 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.84 7.96 -51.93 -0.41 0.42 16 35 H 0.09 1.26 7.56 -51.93 -0.39 0.86 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.43 6.54 1.88 -65.41 -0.12 6.41 16 43 H 0.08 1.63 6.89 -51.93 -0.36 1.27 16 44 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.08 1.12 5.27 -51.93 -0.27 0.85 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.08 1.28 5.27 -51.92 -0.27 1.01 16 50 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 51 H 0.09 2.04 7.99 -51.93 -0.41 1.63 16 52 H 0.25 6.82 8.31 -40.82 -0.34 6.49 16 LS Contribution 398.05 15.07 6.00 6.00 Total: -1.00 -31.05 398.05 -10.50 -41.55 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -9.68 Total: 10.42 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.55 Total: -5.08 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.68 Total: -57.99 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.05 -10.50 -41.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021432156.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.399 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds