Wall clock time and date at job start Wed Apr 1 2020 03:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34262 * 126.29001 * 2 1 4 4 H 0.96996 * 125.75496 * 0.03091 * 3 2 1 5 5 N 1.39940 * 108.48985 * 180.24127 * 3 2 1 6 6 C 1.30444 * 108.89921 * 359.74987 * 5 3 2 7 7 C 1.50700 * 125.98996 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.46895 * 299.97426 * 7 6 5 9 9 C 1.52998 * 109.46954 * 59.97767 * 7 6 5 10 10 C 1.38044 * 126.29354 * 179.81753 * 2 1 3 11 11 C 1.47430 * 126.41381 * 0.02706 * 10 2 1 12 12 O 1.21602 * 119.99613 * 269.68554 * 11 10 2 13 13 N 1.34771 * 120.00139 * 89.40822 * 11 10 2 14 14 C 1.46498 * 120.00065 * 180.27602 * 13 11 10 15 15 C 1.53157 * 109.43508 * 119.96372 * 14 13 11 16 16 C 1.53700 * 108.87495 * 66.17402 * 15 14 13 17 17 H 1.09000 * 112.09593 * 188.25305 * 16 15 14 18 18 C 1.54610 * 107.83479 * 312.22856 * 16 15 14 19 19 C 1.54317 * 104.74840 * 88.67280 * 18 16 15 20 20 C 1.54603 * 104.75261 * 359.97438 * 19 18 16 21 21 H 1.09002 * 112.19286 * 146.79978 * 20 19 18 22 22 C 1.53144 * 109.43528 * 240.13942 * 14 13 11 23 23 N 1.48294 * 107.27526 * 64.01314 * 16 15 14 24 24 C 1.36939 * 128.21297 * 107.37263 * 23 16 15 25 25 H 1.07996 * 120.00035 * 15.34505 * 24 23 16 26 26 C 1.38809 * 119.99825 * 195.35144 * 24 23 16 27 27 N 1.31621 * 120.00049 * 9.24133 * 26 24 23 28 28 Si 1.86801 * 119.99891 * 189.23736 * 26 24 23 29 29 H 1.48501 * 109.46800 * 89.99824 * 28 26 24 30 30 H 1.48498 * 109.47153 * 209.99761 * 28 26 24 31 31 H 1.48496 * 109.47316 * 330.00235 * 28 26 24 32 32 H 1.08995 * 109.47171 * 270.18060 * 1 2 3 33 33 H 1.09006 * 109.46757 * 30.18159 * 1 2 3 34 34 H 1.08994 * 109.46980 * 150.17825 * 1 2 3 35 35 H 1.09001 * 109.46601 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46586 * 179.97438 * 8 7 6 37 37 H 1.08994 * 109.47360 * 299.99985 * 8 7 6 38 38 H 1.08999 * 109.46884 * 60.00461 * 8 7 6 39 39 H 1.09001 * 109.47006 * 59.99681 * 9 7 6 40 40 H 1.08996 * 109.46737 * 179.97438 * 9 7 6 41 41 H 1.08994 * 109.46728 * 300.00027 * 9 7 6 42 42 H 0.97003 * 120.00210 * 0.27996 * 13 11 10 43 43 H 1.08993 * 109.43728 * 0.05066 * 14 13 11 44 44 H 1.08991 * 109.56815 * 185.99270 * 15 14 13 45 45 H 1.08997 * 109.56728 * 306.35821 * 15 14 13 46 46 H 1.08999 * 110.38078 * 207.48680 * 18 16 15 47 47 H 1.09003 * 110.38302 * 329.74250 * 18 16 15 48 48 H 1.08997 * 110.38547 * 118.81799 * 19 18 16 49 49 H 1.09007 * 110.37690 * 241.18383 * 19 18 16 50 50 H 1.09000 * 109.57235 * 53.64457 * 22 14 13 51 51 H 1.09005 * 109.57061 * 174.00738 * 22 14 13 52 52 H 0.97011 * 119.99557 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0027 2.0049 0.0004 5 7 3.6341 0.6544 -0.0056 6 6 3.6591 -0.6498 -0.0035 7 6 4.8952 -1.5118 -0.0074 8 6 5.7204 -1.2144 -1.2610 9 6 5.7317 -1.2094 1.2375 10 6 2.3241 -1.1126 0.0035 11 6 1.8859 -2.5203 0.0075 12 8 1.7103 -3.0994 1.0622 13 7 1.6745 -3.1635 -1.1578 14 6 1.2332 -4.5604 -1.1539 15 6 -0.1186 -4.6698 -1.8655 16 6 0.0726 -4.3269 -3.3515 17 1 -0.8777 -4.2476 -3.8795 18 6 0.8973 -3.0218 -3.4340 19 6 2.3687 -3.4867 -3.4424 20 6 2.2947 -5.0289 -3.3635 21 1 3.1065 -5.5086 -3.9105 22 6 2.2688 -5.4240 -1.8799 23 7 0.9648 -5.3602 -3.9306 24 6 0.6381 -6.3791 -4.7852 25 1 -0.3054 -6.3617 -5.3105 26 6 1.5196 -7.4342 -4.9763 27 7 2.5813 -7.5523 -4.2073 28 14 1.1989 -8.6866 -6.3247 29 1 1.8518 -8.2391 -7.5812 30 1 1.7543 -10.0030 -5.9199 31 1 -0.2641 -8.8131 -6.5450 32 1 -0.3633 0.0032 1.0276 33 1 -0.3633 0.8884 -0.5167 34 1 -0.3633 -0.8915 -0.5110 35 1 4.6053 -2.5625 -0.0040 36 1 6.6147 -1.8376 -1.2635 37 1 5.1245 -1.4298 -2.1478 38 1 6.0102 -0.1637 -1.2643 39 1 5.1437 -1.4213 2.1305 40 1 6.6255 -1.8332 1.2349 41 1 6.0214 -0.1587 1.2340 42 1 1.8146 -2.7016 -1.9992 43 1 1.1305 -4.9054 -0.1251 44 1 -0.4993 -5.6867 -1.7715 45 1 -0.8246 -3.9708 -1.4173 46 1 0.6642 -2.4829 -4.3523 47 1 0.7010 -2.3931 -2.5654 48 1 2.8596 -3.1765 -4.3648 49 1 2.8978 -3.0876 -2.5769 50 1 3.2533 -5.2591 -1.4420 51 1 1.9973 -6.4756 -1.7865 52 1 3.1974 -8.2895 -4.3412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021432156.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:22 Heat of formation + Delta-G solvation = 102.189649 kcal Electronic energy + Delta-G solvation = -33152.642721 eV Core-core repulsion = 29155.945879 eV Total energy + Delta-G solvation = -3996.696842 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.79780 -42.07387 -39.39246 -36.72789 -35.76327 -33.89413 -33.21840 -32.73060 -31.96833 -31.59754 -30.61753 -28.28089 -28.02568 -26.44323 -24.83858 -24.29554 -24.14102 -22.46061 -21.41907 -21.11076 -20.44347 -20.05813 -19.08871 -18.54744 -17.68938 -16.79728 -16.34845 -16.03050 -15.91517 -15.84833 -15.49725 -15.21636 -15.05158 -14.63881 -14.52712 -14.42069 -14.21466 -14.09192 -13.71441 -13.62403 -13.51386 -13.34911 -13.23607 -13.18100 -12.99936 -12.78728 -12.61565 -12.42388 -12.38053 -12.14942 -12.01895 -12.00429 -11.90283 -11.73457 -11.60268 -11.38777 -11.13404 -10.99971 -10.81311 -10.52177 -10.36556 -9.62521 -9.59391 -8.71492 -7.79072 -5.13714 0.71734 1.40442 1.50376 1.51192 1.58917 1.64261 1.79111 2.53728 2.54596 3.38508 3.41889 3.57569 3.66643 3.92267 3.95168 3.97449 4.12243 4.17615 4.20385 4.22351 4.30822 4.32848 4.41973 4.49436 4.50785 4.54742 4.65054 4.71428 4.80659 4.83288 4.90593 4.95046 4.97700 4.99470 5.02869 5.04862 5.09258 5.13871 5.16832 5.28318 5.29936 5.32806 5.34825 5.45824 5.48207 5.59833 5.63063 5.82857 5.88110 6.31136 6.31583 6.60042 6.68519 7.13863 7.35624 7.80744 8.60802 9.31827 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.003472 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.587746 B = 8061.976115 C = 8757.301247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.145 3.855 3 N -0.448 5.448 4 H 0.457 0.543 5 N -0.303 5.303 6 C 0.117 3.883 7 C -0.025 4.025 8 C -0.137 4.137 9 C -0.135 4.135 10 C -0.314 4.314 11 C 0.587 3.413 12 O -0.589 6.589 13 N -0.715 5.715 14 C 0.152 3.848 15 C -0.129 4.129 16 C 0.143 3.857 17 H 0.076 0.924 18 C -0.148 4.148 19 C -0.163 4.163 20 C 0.180 3.820 21 H 0.070 0.930 22 C -0.113 4.113 23 N -0.603 5.603 24 C -0.231 4.231 25 H 0.077 0.923 26 C -0.055 4.055 27 N -0.935 5.935 28 Si 0.967 3.033 29 H -0.290 1.290 30 H -0.300 1.300 31 H -0.272 1.272 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.433 0.567 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.103 0.897 48 H 0.062 0.938 49 H 0.092 0.908 50 H 0.042 0.958 51 H 0.045 0.955 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 20.090 6.849 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.011 3.989 3 N -0.156 5.156 4 H 0.305 0.695 5 N -0.125 5.125 6 C -0.050 4.050 7 C -0.045 4.045 8 C -0.195 4.195 9 C -0.193 4.193 10 C -0.329 4.329 11 C 0.373 3.627 12 O -0.470 6.470 13 N -0.387 5.387 14 C 0.047 3.953 15 C -0.169 4.169 16 C 0.036 3.964 17 H 0.094 0.906 18 C -0.187 4.187 19 C -0.202 4.202 20 C 0.073 3.927 21 H 0.088 0.912 22 C -0.153 4.153 23 N -0.325 5.325 24 C -0.360 4.360 25 H 0.095 0.905 26 C -0.250 4.250 27 N -0.582 5.582 28 Si 0.797 3.203 29 H -0.218 1.218 30 H -0.227 1.227 31 H -0.197 1.197 32 H 0.114 0.886 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.295 0.705 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.121 0.879 48 H 0.081 0.919 49 H 0.110 0.890 50 H 0.061 0.939 51 H 0.063 0.937 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.422 20.557 7.373 21.843 hybrid contribution -0.471 -1.607 -0.787 1.850 sum -0.893 18.950 6.586 20.081 Atomic orbital electron populations 1.20749 0.84083 1.05925 1.05141 1.21724 0.95683 0.85953 0.95549 1.45974 1.03224 1.08926 1.57489 0.69456 1.76965 0.96933 1.11944 1.26678 1.22373 0.94190 0.91497 0.96922 1.19728 0.90259 0.96342 0.98205 1.21780 0.99705 1.02668 0.95316 1.21747 0.99504 1.02649 0.95377 1.19959 0.93957 0.93180 1.25800 1.17828 0.75500 0.85473 0.83887 1.90705 1.53754 1.69188 1.33363 1.48951 1.66447 1.13281 1.10065 1.20791 0.94208 0.81220 0.99057 1.22400 0.95645 1.01239 0.97624 1.21758 0.94160 0.88790 0.91648 0.90577 1.23173 0.94655 0.98067 1.02774 1.23305 0.97000 0.98222 1.01698 1.21305 0.89488 0.90719 0.91216 0.91226 1.22134 0.96713 0.98574 0.97867 1.45350 1.04124 1.30753 1.52233 1.19281 1.03285 0.97652 1.15751 0.90546 1.25489 0.98711 0.99368 1.01393 1.70061 1.15445 1.32503 1.40217 0.85253 0.77629 0.78293 0.79152 1.21753 1.22749 1.19725 0.88552 0.86832 0.89797 0.91288 0.90601 0.92933 0.91539 0.93755 0.90391 0.91560 0.70528 0.91177 0.93077 0.90434 0.90509 0.87939 0.91927 0.89005 0.93926 0.93654 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.25 71.24 0.73 -0.51 16 2 C 0.14 2.83 7.29 42.14 0.31 3.13 16 3 N -0.45 -7.61 7.29 -46.79 -0.34 -7.95 16 4 H 0.46 4.04 8.96 -213.43 -1.91 2.13 16 5 N -0.30 -7.11 12.63 -46.68 -0.59 -7.70 16 6 C 0.12 3.08 5.77 43.52 0.25 3.33 16 7 C -0.02 -0.61 3.31 -11.54 -0.04 -0.65 16 8 C -0.14 -2.89 9.18 71.98 0.66 -2.23 16 9 C -0.13 -2.91 9.18 71.98 0.66 -2.25 16 10 C -0.31 -8.50 5.88 -20.15 -0.12 -8.62 16 11 C 0.59 19.10 6.67 86.67 0.58 19.68 16 12 O -0.59 -23.81 16.43 -4.04 -0.07 -23.88 16 13 N -0.72 -22.24 2.77 -445.34 -1.23 -23.48 16 14 C 0.15 5.61 3.15 45.09 0.14 5.75 16 15 C -0.13 -4.53 5.49 30.88 0.17 -4.36 16 16 C 0.14 5.23 4.32 45.43 0.20 5.43 16 17 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 18 C -0.15 -4.37 5.75 31.59 0.18 -4.18 16 19 C -0.16 -5.54 5.76 31.59 0.18 -5.36 16 20 C 0.18 7.99 3.13 45.37 0.14 8.13 16 21 H 0.07 3.68 6.36 -2.39 -0.02 3.67 16 22 C -0.11 -4.87 5.39 30.83 0.17 -4.70 16 23 N -0.60 -28.22 2.82 -637.42 -1.80 -30.02 16 24 C -0.23 -12.16 10.38 84.03 0.87 -11.29 16 25 H 0.08 3.90 7.85 -2.91 -0.02 3.88 16 26 C -0.06 -3.00 5.42 84.86 0.46 -2.54 16 27 N -0.93 -53.40 10.59 21.65 0.23 -53.17 16 28 Si 0.97 44.54 29.56 68.60 2.03 46.56 16 29 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 30 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 31 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.08 1.21 7.96 -2.39 -0.02 1.19 16 35 H 0.07 1.96 7.56 -2.39 -0.02 1.94 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.43 12.31 1.88 -115.81 -0.22 12.09 16 43 H 0.07 2.81 6.89 -2.39 -0.02 2.79 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.10 2.57 5.27 -2.39 -0.01 2.56 16 48 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.09 2.88 5.27 -2.38 -0.01 2.87 16 50 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.04 2.30 7.99 -2.38 -0.02 2.28 16 52 H 0.24 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -70.25 398.05 2.58 -67.67 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: -1.19 Total: 33.19 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.54 Total: -1.23 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -3.73 Total: -122.32 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.07 Total: -23.88 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.25 2.58 -67.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021432156.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.861 kcal (2) G-P(sol) polarization free energy of solvation -70.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds