Wall clock time and date at job start Wed Apr 1 2020 03:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30836 * 125.89497 * 2 1 4 4 N 1.40087 * 108.20086 * 180.02562 * 3 2 1 5 5 H 0.97003 * 126.03652 * 179.97438 * 4 3 2 6 6 C 1.34942 * 107.92993 * 359.75687 * 4 3 2 7 7 C 1.50701 * 126.13070 * 180.23481 * 6 4 3 8 8 C 1.35319 * 107.74205 * 0.39106 * 6 4 3 9 9 C 1.50708 * 126.03890 * 179.87423 * 8 6 4 10 10 C 1.50697 * 109.46831 * 269.70985 * 9 8 6 11 11 O 1.21282 * 120.00326 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99733 * 179.97438 * 10 9 8 13 13 C 1.46945 * 120.84205 * 0.02562 * 12 10 9 14 14 C 1.53146 * 109.01773 * 233.74625 * 13 12 10 15 15 C 1.53109 * 109.47829 * 305.91946 * 14 13 12 16 16 C 1.52851 * 109.35021 * 60.65127 * 15 14 13 17 17 H 1.09003 * 109.25236 * 57.51977 * 16 15 14 18 18 C 1.52770 * 110.21227 * 177.57078 * 16 15 14 19 19 N 1.46888 * 109.19875 * 67.36215 * 18 16 15 20 20 C 1.36933 * 120.77703 * 233.32503 * 19 18 16 21 21 H 1.08008 * 119.99964 * 151.95336 * 20 19 18 22 22 C 1.38810 * 120.00203 * 331.95892 * 20 19 18 23 23 N 1.31618 * 119.99753 * 343.14204 * 22 20 19 24 24 Si 1.86795 * 120.00198 * 163.14237 * 22 20 19 25 25 H 1.48496 * 109.47558 * 90.00010 * 24 22 20 26 26 H 1.48500 * 109.46998 * 210.00173 * 24 22 20 27 27 H 1.48504 * 109.47098 * 329.99627 * 24 22 20 28 28 C 1.46979 * 118.44772 * 53.34355 * 19 18 16 29 29 C 1.53082 * 108.62119 * 305.68267 * 28 19 18 30 30 C 1.47300 * 120.84634 * 179.71779 * 12 10 9 31 31 H 1.09008 * 110.06896 * 5.20425 * 30 12 10 32 32 H 1.09003 * 109.47289 * 269.97758 * 1 2 3 33 33 H 1.08993 * 109.47028 * 29.98009 * 1 2 3 34 34 H 1.08999 * 109.46953 * 149.97906 * 1 2 3 35 35 H 1.08998 * 109.47212 * 270.17602 * 7 6 4 36 36 H 1.08996 * 109.47006 * 30.18104 * 7 6 4 37 37 H 1.09009 * 109.47082 * 150.17764 * 7 6 4 38 38 H 1.08996 * 109.47148 * 149.70857 * 9 8 6 39 39 H 1.08999 * 109.47083 * 29.70990 * 9 8 6 40 40 H 1.09003 * 109.54798 * 353.60386 * 13 12 10 41 41 H 1.09002 * 109.55202 * 113.79331 * 13 12 10 42 42 H 1.08993 * 109.47606 * 65.92720 * 14 13 12 43 43 H 1.09003 * 109.46779 * 185.92215 * 14 13 12 44 44 H 1.08999 * 109.49563 * 180.61104 * 15 14 13 45 45 H 1.09000 * 109.49537 * 300.66295 * 15 14 13 46 46 H 1.09001 * 109.51850 * 187.28206 * 18 16 15 47 47 H 1.09004 * 109.51399 * 307.44682 * 18 16 15 48 48 H 0.97001 * 120.00237 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.60840 * 65.42474 * 28 19 18 50 50 H 1.09001 * 109.60961 * 185.93861 * 28 19 18 51 51 H 1.09003 * 109.45608 * 175.38020 * 29 28 19 52 52 H 1.09006 * 109.45391 * 295.33728 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3908 1.2080 -0.0011 6 6 3.6143 -0.7153 0.0045 7 6 4.8351 -1.5988 0.0108 8 6 2.3272 -1.1330 -0.0006 9 6 1.8600 -2.5658 -0.0003 10 6 1.7038 -3.0434 -1.4210 11 8 1.9483 -2.2944 -2.3430 12 7 1.2934 -4.3035 -1.6671 13 6 0.9927 -5.2267 -0.5641 14 6 1.8017 -6.5129 -0.7553 15 6 1.5325 -7.0827 -2.1507 16 6 1.9620 -6.0634 -3.2056 17 1 3.0161 -5.8235 -3.0654 18 6 1.7578 -6.6361 -4.6070 19 7 0.3193 -6.7927 -4.8599 20 6 -0.1935 -7.9949 -5.2684 21 1 -1.2136 -8.2563 -5.0286 22 6 0.5978 -8.8776 -5.9906 23 7 1.7017 -8.4514 -6.5669 24 14 0.0958 -10.6702 -6.1448 25 1 -0.7596 -10.8433 -7.3462 26 1 1.3103 -11.5147 -6.2759 27 1 -0.6621 -11.0779 -4.9345 28 6 -0.5567 -5.6288 -4.6646 29 6 -0.3426 -5.0879 -3.2486 30 6 1.1285 -4.7879 -3.0483 31 1 1.4684 -4.0296 -3.7538 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3633 0.8901 -0.5135 34 1 -0.3633 -0.8898 -0.5142 35 1 5.1338 -1.8131 -1.0153 36 1 5.6489 -1.0902 0.5275 37 1 4.6054 -2.5322 0.5249 38 1 0.9014 -2.6353 0.5138 39 1 2.5936 -3.1871 0.5133 40 1 1.2641 -4.7628 0.3842 41 1 -0.0720 -5.4606 -0.5642 42 1 2.8641 -6.2928 -0.6516 43 1 1.5067 -7.2431 -0.0017 44 1 2.0998 -8.0040 -2.2831 45 1 0.4683 -7.2922 -2.2590 46 1 2.1852 -5.9563 -5.3441 47 1 2.2479 -7.6071 -4.6786 48 1 2.2545 -9.0681 -7.0719 49 1 -0.3073 -4.8570 -5.3927 50 1 -1.5972 -5.9292 -4.7881 51 1 -0.9245 -4.1757 -3.1165 52 1 -0.6664 -5.8335 -2.5224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021732744.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:46 Heat of formation + Delta-G solvation = 29.598748 kcal Electronic energy + Delta-G solvation = -32221.783478 eV Core-core repulsion = 28221.938858 eV Total energy + Delta-G solvation = -3999.844620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.37727 -41.46662 -39.33536 -36.99453 -34.55154 -34.30599 -33.94110 -33.68807 -31.86817 -31.13759 -29.99826 -28.54895 -27.45992 -26.98808 -25.94122 -23.95558 -23.47610 -22.77556 -21.28011 -20.87746 -19.82620 -19.29353 -18.46328 -18.24201 -17.92989 -16.93204 -16.76266 -16.31959 -15.95924 -15.87856 -15.36397 -15.15605 -14.96523 -14.83927 -14.47557 -14.40949 -14.14884 -14.12685 -14.03216 -13.77255 -13.63415 -13.50263 -13.22869 -13.17958 -13.09753 -12.88738 -12.82166 -12.56844 -12.53616 -12.46652 -12.15384 -11.94812 -11.79940 -11.69403 -11.46206 -11.36798 -11.26490 -11.00362 -10.64740 -10.50421 -10.16093 -9.41705 -9.29687 -8.65920 -7.84503 -5.30025 0.92876 1.48693 1.50051 1.59683 1.64915 1.82501 2.00492 2.27591 2.53538 3.31510 3.64973 3.71896 3.74633 3.77262 3.98342 4.03796 4.11772 4.18884 4.21222 4.27132 4.31541 4.42096 4.43412 4.55773 4.58829 4.64898 4.69137 4.74465 4.78138 4.80154 4.81637 4.95763 5.00181 5.02529 5.05848 5.06820 5.10521 5.11945 5.19174 5.23107 5.28340 5.29575 5.36254 5.51231 5.63182 5.70689 5.71446 5.76404 5.77469 6.40910 6.46613 6.67771 6.76449 7.16509 7.39316 7.86697 8.41089 9.22442 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021995 B = 0.002672 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.728541 B =10474.585429 C =10668.824084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.078 3.922 3 N -0.336 5.336 4 N -0.476 5.476 5 H 0.447 0.553 6 C 0.101 3.899 7 C -0.093 4.093 8 C -0.239 4.239 9 C -0.048 4.048 10 C 0.510 3.490 11 O -0.590 6.590 12 N -0.606 5.606 13 C 0.103 3.897 14 C -0.125 4.125 15 C -0.098 4.098 16 C -0.102 4.102 17 H 0.054 0.946 18 C 0.188 3.812 19 N -0.601 5.601 20 C -0.253 4.253 21 H 0.070 0.930 22 C -0.051 4.051 23 N -0.938 5.938 24 Si 0.965 3.035 25 H -0.289 1.289 26 H -0.295 1.295 27 H -0.265 1.265 28 C 0.141 3.859 29 C -0.123 4.123 30 C 0.165 3.835 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.044 0.956 45 H 0.061 0.939 46 H -0.022 1.022 47 H 0.060 0.940 48 H 0.248 0.752 49 H 0.001 0.999 50 H 0.061 0.939 51 H 0.066 0.934 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.332 10.590 22.614 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 N -0.161 5.161 4 N -0.185 5.185 5 H 0.292 0.708 6 C -0.029 4.029 7 C -0.151 4.151 8 C -0.250 4.250 9 C -0.089 4.089 10 C 0.299 3.701 11 O -0.470 6.470 12 N -0.339 5.339 13 C -0.019 4.019 14 C -0.163 4.163 15 C -0.136 4.136 16 C -0.123 4.123 17 H 0.073 0.927 18 C 0.061 3.939 19 N -0.324 5.324 20 C -0.384 4.384 21 H 0.088 0.912 22 C -0.246 4.246 23 N -0.585 5.585 24 Si 0.793 3.207 25 H -0.216 1.216 26 H -0.222 1.222 27 H -0.190 1.190 28 C 0.015 3.985 29 C -0.162 4.162 30 C 0.061 3.939 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.062 0.938 45 H 0.080 0.920 46 H -0.004 1.004 47 H 0.078 0.922 48 H 0.057 0.943 49 H 0.019 0.981 50 H 0.080 0.920 51 H 0.084 0.916 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.573 12.172 22.062 25.328 hybrid contribution 0.568 -1.266 -1.490 2.036 sum 3.141 10.906 20.572 23.495 Atomic orbital electron populations 1.20256 0.85537 1.03295 1.04093 1.22631 0.98032 0.90414 0.97734 1.77172 0.87610 1.23365 1.27905 1.46118 1.07092 1.05238 1.60089 0.70763 1.21344 0.97814 0.85120 0.98611 1.20596 0.92267 0.98648 1.03618 1.19358 0.91711 0.95489 1.18464 1.19997 1.05415 0.91554 0.91906 1.21402 0.75424 0.80613 0.92614 1.90678 1.52240 1.55745 1.48340 1.48601 1.66120 1.12062 1.07073 1.22026 1.00512 0.89727 0.89587 1.21915 1.00773 0.97325 0.96293 1.21335 1.01528 0.96614 0.94083 1.21771 0.97913 0.95374 0.97258 0.92740 1.20435 0.84758 0.98137 0.90565 1.44226 1.03173 1.07164 1.77824 1.19471 0.98433 0.93355 1.27092 0.91217 1.25791 0.98593 1.02938 0.97265 1.70205 1.17371 1.34677 1.36228 0.85311 0.76766 0.80477 0.78104 1.21566 1.22163 1.18979 1.21004 0.94723 0.88706 0.94050 1.21885 0.95243 1.00710 0.98376 1.20597 0.95539 0.94366 0.83368 0.92631 0.88083 0.91393 0.90517 0.90985 0.88639 0.87920 0.85708 0.85584 0.86075 0.90395 0.91436 0.88352 0.93763 0.92017 1.00383 0.92188 0.94268 0.98145 0.92005 0.91570 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.12 71.24 0.72 -0.65 16 2 C 0.08 1.92 7.22 43.10 0.31 2.23 16 3 N -0.34 -8.98 12.70 -47.39 -0.60 -9.58 16 4 N -0.48 -10.05 7.36 -48.00 -0.35 -10.40 16 5 H 0.45 6.48 8.96 -213.33 -1.91 4.57 16 6 C 0.10 2.03 7.21 41.41 0.30 2.33 16 7 C -0.09 -1.21 10.22 71.24 0.73 -0.48 16 8 C -0.24 -5.31 4.59 -20.14 -0.09 -5.41 16 9 C -0.05 -0.83 4.00 29.10 0.12 -0.71 16 10 C 0.51 13.77 7.70 87.66 0.67 14.44 16 11 O -0.59 -22.44 15.49 -3.03 -0.05 -22.48 16 12 N -0.61 -15.66 2.62 -796.98 -2.09 -17.75 16 13 C 0.10 1.75 5.84 86.34 0.50 2.25 16 14 C -0.13 -2.45 6.08 30.68 0.19 -2.26 16 15 C -0.10 -3.05 4.86 30.58 0.15 -2.90 16 16 C -0.10 -3.82 2.50 -10.86 -0.03 -3.84 16 17 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 18 C 0.19 9.19 4.68 86.23 0.40 9.59 16 19 N -0.60 -29.86 2.63 -700.08 -1.84 -31.70 16 20 C -0.25 -13.62 9.60 84.03 0.81 -12.81 16 21 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 22 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 23 N -0.94 -55.83 11.19 21.65 0.24 -55.59 16 24 Si 0.97 44.20 29.59 68.60 2.03 46.23 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 27 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 28 C 0.14 5.98 6.50 86.32 0.56 6.54 16 29 C -0.12 -4.13 4.93 30.12 0.15 -3.98 16 30 C 0.16 5.74 2.58 44.39 0.11 5.85 16 31 H 0.06 2.36 7.06 -2.38 -0.02 2.34 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.41 7.92 -2.39 -0.02 1.39 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 0.97 7.14 -2.38 -0.02 0.95 16 38 H 0.12 1.46 7.73 -2.39 -0.02 1.44 16 39 H 0.13 1.36 6.70 -2.39 -0.02 1.35 16 40 H 0.12 1.08 5.96 -2.39 -0.01 1.06 16 41 H 0.08 1.26 7.18 -2.39 -0.02 1.25 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 2.11 6.18 -2.39 -0.01 2.10 16 46 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 47 H 0.06 3.29 6.06 -2.39 -0.01 3.27 16 48 H 0.25 14.36 8.31 -92.71 -0.77 13.58 16 49 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 50 H 0.06 2.50 7.94 -2.39 -0.02 2.48 16 51 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 52 H 0.08 2.51 5.26 -2.38 -0.01 2.50 16 Total: -1.00 -78.65 396.28 2.39 -76.27 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -0.98 Total: 17.19 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 6.02 Total: 7.81 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -4.64 Total: -125.02 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.48 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -78.65 2.39 -76.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021732744.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.866 kcal (2) G-P(sol) polarization free energy of solvation -78.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds