Wall clock time and date at job start Wed Apr 1 2020 04:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34854 * 125.96021 * 2 1 4 4 N 1.36314 * 106.68531 * 180.02562 * 3 2 1 5 5 C 1.35429 * 107.40007 * 359.96298 * 4 3 2 6 6 N 1.30093 * 108.62676 * 0.05202 * 5 4 3 7 7 C 1.51037 * 123.98307 * 180.09163 * 5 4 3 8 8 C 1.53398 * 108.20441 * 15.99092 * 7 5 4 9 9 H 1.09003 * 109.50909 * 71.08069 * 8 7 5 10 10 C 1.50706 * 109.51157 * 191.17146 * 8 7 5 11 11 O 1.21279 * 119.99785 * 119.99906 * 10 8 7 12 12 N 1.34771 * 119.99912 * 300.00183 * 10 8 7 13 13 C 1.46505 * 119.99791 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.46936 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.50167 * 55.00163 * 14 13 12 16 16 C 1.53042 * 109.49730 * 175.06632 * 14 13 12 17 17 C 1.53035 * 109.53756 * 181.31681 * 16 14 13 18 18 C 1.53194 * 109.31543 * 298.63204 * 17 16 14 19 19 N 1.46928 * 108.77183 * 54.63709 * 18 17 16 20 20 C 1.36934 * 120.63088 * 126.39263 * 19 18 17 21 21 H 1.08002 * 119.99965 * 207.68196 * 20 19 18 22 22 C 1.38817 * 119.99829 * 27.68152 * 20 19 18 23 23 N 1.31617 * 120.00201 * 17.35462 * 22 20 19 24 24 Si 1.86802 * 119.99775 * 197.36200 * 22 20 19 25 25 H 1.48498 * 109.47231 * 89.99614 * 24 22 20 26 26 H 1.48497 * 109.46803 * 209.99910 * 24 22 20 27 27 H 1.48500 * 109.47085 * 329.99550 * 24 22 20 28 28 C 1.46936 * 118.76448 * 306.40989 * 19 18 17 29 29 C 1.53157 * 109.37991 * 311.20819 * 8 7 5 30 30 C 1.46475 * 127.77941 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47827 * 269.97987 * 1 2 3 32 32 H 1.09007 * 109.46997 * 29.98047 * 1 2 3 33 33 H 1.09004 * 109.47019 * 149.97796 * 1 2 3 34 34 H 1.07994 * 126.65749 * 0.02562 * 3 2 1 35 35 H 1.08999 * 109.71320 * 135.66294 * 7 5 4 36 36 H 1.08991 * 109.72335 * 256.26914 * 7 5 4 37 37 H 0.97000 * 120.00690 * 359.97438 * 12 10 8 38 38 H 1.08993 * 109.47213 * 300.00066 * 13 12 10 39 39 H 1.09003 * 109.46854 * 60.00169 * 13 12 10 40 40 H 1.09005 * 109.45772 * 301.33515 * 16 14 13 41 41 H 1.09001 * 109.45787 * 61.30681 * 16 14 13 42 42 H 1.08999 * 109.49801 * 58.58917 * 17 16 14 43 43 H 1.09004 * 109.49698 * 178.67978 * 17 16 14 44 44 H 1.09000 * 109.58829 * 174.42647 * 18 17 16 45 45 H 1.08998 * 109.58533 * 294.70678 * 18 17 16 46 46 H 0.96997 * 120.00252 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.56088 * 293.79000 * 28 19 18 48 48 H 1.09004 * 109.61376 * 173.35733 * 28 19 18 49 49 H 1.08999 * 109.34421 * 309.33361 * 29 8 7 50 50 H 1.09001 * 109.60005 * 189.33839 * 29 8 7 51 51 H 1.09001 * 109.58041 * 316.89895 * 30 4 3 52 52 H 1.08999 * 109.58303 * 77.16562 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5856 0.6416 -0.0006 5 6 3.5413 -0.7120 -0.0001 6 7 2.2956 -1.0870 -0.0004 7 6 4.7654 -1.5967 0.0015 8 6 5.9740 -0.7420 0.4038 9 1 5.9051 -0.4893 1.4619 10 6 7.2431 -1.5149 0.1527 11 8 8.0762 -1.0801 -0.6140 12 7 7.4523 -2.6892 0.7800 13 6 8.6858 -3.4408 0.5354 14 6 8.6722 -4.7269 1.3641 15 1 7.7675 -5.2930 1.1426 16 6 9.9007 -5.5711 1.0173 17 6 9.8710 -6.8727 1.8216 18 6 9.9161 -6.5451 3.3175 19 7 8.8215 -5.6166 3.6314 20 6 7.9282 -5.9030 4.6289 21 1 6.9237 -5.5087 4.5838 22 6 8.3136 -6.7001 5.6980 23 7 9.5913 -6.8993 5.9434 24 14 7.0189 -7.4903 6.7883 25 1 6.6605 -8.8246 6.2439 26 1 7.5574 -7.6450 8.1636 27 1 5.8095 -6.6293 6.8243 28 6 8.7029 -4.3749 2.8548 29 6 5.9854 0.5448 -0.4266 30 6 4.8148 1.4382 -0.0013 31 1 -0.3635 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3633 -0.8898 -0.5142 34 1 1.9763 2.1222 0.0004 35 1 4.6328 -2.4066 0.7188 36 1 4.9219 -2.0100 -0.9948 37 1 6.7862 -3.0368 1.3935 38 1 8.7545 -3.6918 -0.5230 39 1 9.5443 -2.8330 0.8212 40 1 9.8935 -5.8022 -0.0479 41 1 10.8050 -5.0138 1.2619 42 1 8.9550 -7.4187 1.5962 43 1 10.7338 -7.4838 1.5568 44 1 9.7956 -7.4611 3.8959 45 1 10.8722 -6.0821 3.5614 46 1 9.8606 -7.4560 6.6907 47 1 9.5589 -3.7324 3.0610 48 1 7.7821 -3.8593 3.1275 49 1 5.8860 0.2939 -1.4827 50 1 6.9240 1.0753 -0.2661 51 1 4.7132 2.2660 -0.7031 52 1 4.9979 1.8284 0.9998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023444677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:35 Heat of formation + Delta-G solvation = 23.693702 kcal Electronic energy + Delta-G solvation = -30588.317119 eV Core-core repulsion = 26588.216437 eV Total energy + Delta-G solvation = -4000.100682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.59632 -40.07276 -37.95590 -36.59087 -34.91142 -33.71251 -32.95466 -31.78091 -30.53527 -30.43062 -29.16106 -27.56971 -25.61498 -25.27539 -24.32422 -23.06368 -22.10946 -21.01787 -20.76391 -20.17279 -19.40086 -19.06127 -17.28154 -17.15779 -16.64186 -16.23146 -15.75306 -15.59243 -14.87528 -14.67552 -14.52945 -14.40577 -14.11592 -13.96050 -13.87028 -13.59574 -13.45802 -13.20154 -12.83018 -12.78107 -12.54161 -12.38574 -12.25840 -12.20554 -12.13081 -11.93539 -11.58754 -11.46862 -11.31222 -11.03332 -10.74760 -10.52496 -10.25439 -10.21174 -10.12323 -10.01198 -9.89932 -9.72751 -9.58346 -9.45718 -9.01963 -8.49187 -8.40403 -6.71484 -5.81964 -3.24835 1.79923 2.48728 2.49931 2.87800 3.07647 3.36066 3.43405 3.43985 3.89589 4.12126 4.21234 4.25429 4.45825 4.64790 4.72623 4.75930 4.83240 4.98866 5.01695 5.10396 5.13251 5.25993 5.32071 5.38206 5.40121 5.43267 5.50508 5.51641 5.58557 5.67117 5.70182 5.78905 5.82606 5.90141 5.95997 6.09298 6.19379 6.28217 6.33914 6.42851 6.55411 6.58359 6.66692 6.73365 6.82514 6.91965 6.93105 7.37011 7.46714 7.64729 7.76017 7.92563 8.13158 8.41207 9.17657 9.81127 10.37497 11.26257 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010850 B = 0.002506 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.040840 B =11168.398939 C =13025.125621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.005 4.005 3 C -0.056 4.056 4 N -0.456 5.456 5 C 0.214 3.786 6 N -0.483 5.483 7 C -0.024 4.024 8 C -0.114 4.114 9 H 0.106 0.894 10 C 0.521 3.479 11 O -0.543 6.543 12 N -0.719 5.719 13 C 0.127 3.873 14 C -0.118 4.118 15 H 0.074 0.926 16 C -0.099 4.099 17 C -0.142 4.142 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.255 4.255 21 H 0.066 0.934 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.902 3.098 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.154 3.846 29 C -0.114 4.114 30 C 0.103 3.897 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.173 0.827 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.405 0.595 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.087 0.913 45 H 0.017 0.983 46 H 0.254 0.746 47 H 0.018 0.982 48 H 0.050 0.950 49 H 0.082 0.918 50 H 0.102 0.898 51 H 0.094 0.906 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.850 15.896 -13.757 23.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.189 4.189 4 N -0.139 5.139 5 C -0.048 4.048 6 N -0.202 5.202 7 C -0.063 4.063 8 C -0.136 4.136 9 H 0.124 0.876 10 C 0.306 3.694 11 O -0.420 6.420 12 N -0.370 5.370 13 C 0.003 3.997 14 C -0.139 4.139 15 H 0.092 0.908 16 C -0.138 4.138 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.313 5.313 20 C -0.384 4.384 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.732 3.268 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.027 3.973 29 C -0.152 4.152 30 C -0.019 4.019 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.190 0.810 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.240 0.760 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.036 0.964 48 H 0.068 0.932 49 H 0.101 0.899 50 H 0.120 0.880 51 H 0.112 0.888 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.315 15.408 -14.137 22.892 hybrid contribution -0.615 0.333 0.997 1.218 sum -9.930 15.740 -13.141 22.782 Atomic orbital electron populations 1.20004 0.87697 1.02478 1.02141 1.20811 0.96494 0.88290 1.07773 1.22286 0.82836 1.00356 1.13380 1.45375 1.06576 1.07420 1.54534 1.23046 0.94648 0.81529 1.05625 1.69962 0.99623 1.30409 1.20233 1.20126 0.86044 0.95582 1.04578 1.21453 0.93244 0.95992 1.02903 0.87563 1.20180 0.87576 0.81279 0.80381 1.90702 1.46343 1.68617 1.36368 1.46107 1.22647 1.21730 1.46511 1.21496 0.85959 0.92681 0.99577 1.21967 0.99706 0.94134 0.98096 0.90761 1.21339 0.96997 0.96989 0.98436 1.22172 1.00329 0.95812 0.99795 1.20799 0.89650 0.95591 0.89670 1.44039 1.32612 1.16930 1.37767 1.19174 0.91572 1.29242 0.98423 0.91676 1.25036 0.95725 1.02102 0.96714 1.70037 1.13749 1.40719 1.30064 0.86299 0.81087 0.79745 0.79697 1.21398 1.21784 1.20404 1.20895 0.98518 0.89458 0.88394 1.21715 0.98057 0.94493 1.00941 1.22052 0.81960 0.94376 1.03499 0.91491 0.91534 0.91228 0.80968 0.87820 0.88658 0.76019 0.91857 0.91501 0.93427 0.92501 0.92719 0.93178 0.89528 0.96465 0.93604 0.96408 0.93187 0.89949 0.87964 0.88800 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.42 36.01 0.38 -0.16 16 2 C 0.00 -0.05 7.10 -82.72 -0.59 -0.64 16 3 C -0.06 -0.52 11.55 -16.76 -0.19 -0.72 16 4 N -0.46 -4.33 3.14 -113.75 -0.36 -4.68 16 5 C 0.21 2.46 7.65 -155.23 -1.19 1.28 16 6 N -0.48 -6.55 11.24 -6.88 -0.08 -6.63 16 7 C -0.02 -0.23 5.47 -27.51 -0.15 -0.38 16 8 C -0.11 -1.01 2.54 -91.48 -0.23 -1.24 16 9 H 0.11 0.85 8.12 -51.93 -0.42 0.43 16 10 C 0.52 6.13 7.13 -10.99 -0.08 6.05 16 11 O -0.54 -8.15 15.84 5.56 0.09 -8.07 16 12 N -0.72 -8.49 5.24 -60.29 -0.32 -8.81 16 13 C 0.13 1.70 5.07 -4.04 -0.02 1.68 16 14 C -0.12 -1.84 2.37 -90.50 -0.21 -2.06 16 15 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 16 C -0.10 -1.57 5.17 -26.69 -0.14 -1.71 16 17 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 18 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 19 N -0.59 -14.19 3.00 -172.31 -0.52 -14.70 16 20 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 21 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 22 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 23 N -0.90 -25.78 11.19 55.49 0.62 -25.16 16 24 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 C 0.15 2.98 5.60 -3.70 -0.02 2.96 16 29 C -0.11 -0.88 4.68 -26.51 -0.12 -1.00 16 30 C 0.10 0.66 6.98 -3.92 -0.03 0.63 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.10 0.94 7.94 -51.93 -0.41 0.53 16 36 H 0.10 0.90 8.11 -51.93 -0.42 0.48 16 37 H 0.40 4.34 7.40 -40.82 -0.30 4.04 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.05 0.92 7.14 -51.93 -0.37 0.55 16 49 H 0.08 0.71 8.12 -51.93 -0.42 0.28 16 50 H 0.10 0.77 7.80 -51.93 -0.41 0.37 16 51 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 407.06 15.07 6.13 6.13 Total: -1.00 -33.39 407.06 -11.42 -44.81 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.96 Total: 1.87 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -3.01 Total: -1.09 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.65 Total: -59.98 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.39 -11.42 -44.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023444677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.506 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds