Wall clock time and date at job start Wed Apr 1 2020 04:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34854 * 125.96021 * 2 1 4 4 N 1.36314 * 106.68531 * 180.02562 * 3 2 1 5 5 C 1.35429 * 107.40007 * 359.96298 * 4 3 2 6 6 N 1.30093 * 108.62676 * 0.05202 * 5 4 3 7 7 C 1.51037 * 123.98307 * 180.09163 * 5 4 3 8 8 C 1.53398 * 108.20441 * 15.99092 * 7 5 4 9 9 H 1.09003 * 109.50909 * 71.08069 * 8 7 5 10 10 C 1.50706 * 109.51157 * 191.17146 * 8 7 5 11 11 O 1.21279 * 119.99785 * 119.99906 * 10 8 7 12 12 N 1.34771 * 119.99912 * 300.00183 * 10 8 7 13 13 C 1.46505 * 119.99791 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.46936 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.50167 * 55.00163 * 14 13 12 16 16 C 1.53042 * 109.49730 * 175.06632 * 14 13 12 17 17 C 1.53035 * 109.53756 * 181.31681 * 16 14 13 18 18 C 1.53194 * 109.31543 * 298.63204 * 17 16 14 19 19 N 1.46928 * 108.77183 * 54.63709 * 18 17 16 20 20 C 1.36934 * 120.63088 * 126.39263 * 19 18 17 21 21 H 1.08002 * 119.99965 * 207.68196 * 20 19 18 22 22 C 1.38817 * 119.99829 * 27.68152 * 20 19 18 23 23 N 1.31617 * 120.00201 * 17.35462 * 22 20 19 24 24 Si 1.86802 * 119.99775 * 197.36200 * 22 20 19 25 25 H 1.48498 * 109.47231 * 89.99614 * 24 22 20 26 26 H 1.48497 * 109.46803 * 209.99910 * 24 22 20 27 27 H 1.48500 * 109.47085 * 329.99550 * 24 22 20 28 28 C 1.46936 * 118.76448 * 306.40989 * 19 18 17 29 29 C 1.53157 * 109.37991 * 311.20819 * 8 7 5 30 30 C 1.46475 * 127.77941 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47827 * 269.97987 * 1 2 3 32 32 H 1.09007 * 109.46997 * 29.98047 * 1 2 3 33 33 H 1.09004 * 109.47019 * 149.97796 * 1 2 3 34 34 H 1.07994 * 126.65749 * 0.02562 * 3 2 1 35 35 H 1.08999 * 109.71320 * 135.66294 * 7 5 4 36 36 H 1.08991 * 109.72335 * 256.26914 * 7 5 4 37 37 H 0.97000 * 120.00690 * 359.97438 * 12 10 8 38 38 H 1.08993 * 109.47213 * 300.00066 * 13 12 10 39 39 H 1.09003 * 109.46854 * 60.00169 * 13 12 10 40 40 H 1.09005 * 109.45772 * 301.33515 * 16 14 13 41 41 H 1.09001 * 109.45787 * 61.30681 * 16 14 13 42 42 H 1.08999 * 109.49801 * 58.58917 * 17 16 14 43 43 H 1.09004 * 109.49698 * 178.67978 * 17 16 14 44 44 H 1.09000 * 109.58829 * 174.42647 * 18 17 16 45 45 H 1.08998 * 109.58533 * 294.70678 * 18 17 16 46 46 H 0.96997 * 120.00252 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.56088 * 293.79000 * 28 19 18 48 48 H 1.09004 * 109.61376 * 173.35733 * 28 19 18 49 49 H 1.08999 * 109.34421 * 309.33361 * 29 8 7 50 50 H 1.09001 * 109.60005 * 189.33839 * 29 8 7 51 51 H 1.09001 * 109.58041 * 316.89895 * 30 4 3 52 52 H 1.08999 * 109.58303 * 77.16562 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5856 0.6416 -0.0006 5 6 3.5413 -0.7120 -0.0001 6 7 2.2956 -1.0870 -0.0004 7 6 4.7654 -1.5967 0.0015 8 6 5.9740 -0.7420 0.4038 9 1 5.9051 -0.4893 1.4619 10 6 7.2431 -1.5149 0.1527 11 8 8.0762 -1.0801 -0.6140 12 7 7.4523 -2.6892 0.7800 13 6 8.6858 -3.4408 0.5354 14 6 8.6722 -4.7269 1.3641 15 1 7.7675 -5.2930 1.1426 16 6 9.9007 -5.5711 1.0173 17 6 9.8710 -6.8727 1.8216 18 6 9.9161 -6.5451 3.3175 19 7 8.8215 -5.6166 3.6314 20 6 7.9282 -5.9030 4.6289 21 1 6.9237 -5.5087 4.5838 22 6 8.3136 -6.7001 5.6980 23 7 9.5913 -6.8993 5.9434 24 14 7.0189 -7.4903 6.7883 25 1 6.6605 -8.8246 6.2439 26 1 7.5574 -7.6450 8.1636 27 1 5.8095 -6.6293 6.8243 28 6 8.7029 -4.3749 2.8548 29 6 5.9854 0.5448 -0.4266 30 6 4.8148 1.4382 -0.0013 31 1 -0.3635 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3633 -0.8898 -0.5142 34 1 1.9763 2.1222 0.0004 35 1 4.6328 -2.4066 0.7188 36 1 4.9219 -2.0100 -0.9948 37 1 6.7862 -3.0368 1.3935 38 1 8.7545 -3.6918 -0.5230 39 1 9.5443 -2.8330 0.8212 40 1 9.8935 -5.8022 -0.0479 41 1 10.8050 -5.0138 1.2619 42 1 8.9550 -7.4187 1.5962 43 1 10.7338 -7.4838 1.5568 44 1 9.7956 -7.4611 3.8959 45 1 10.8722 -6.0821 3.5614 46 1 9.8606 -7.4560 6.6907 47 1 9.5589 -3.7324 3.0610 48 1 7.7821 -3.8593 3.1275 49 1 5.8860 0.2939 -1.4827 50 1 6.9240 1.0753 -0.2661 51 1 4.7132 2.2660 -0.7031 52 1 4.9979 1.8284 0.9998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023444677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:34 Heat of formation + Delta-G solvation = 4.073986 kcal Electronic energy + Delta-G solvation = -30589.167894 eV Core-core repulsion = 26588.216437 eV Total energy + Delta-G solvation = -4000.951457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.32279 -41.05378 -39.41640 -37.38058 -36.24233 -34.78487 -34.26875 -32.45892 -32.29302 -31.89248 -29.92711 -28.32892 -27.25118 -26.70760 -25.02825 -23.99819 -23.69775 -22.41842 -21.63050 -21.13542 -20.50169 -20.08709 -18.69439 -18.03001 -17.84754 -17.05951 -16.87954 -16.63514 -16.50070 -15.90701 -15.59144 -15.21843 -15.16668 -15.05563 -14.87500 -14.71504 -14.61619 -14.49516 -14.00381 -13.87725 -13.73891 -13.58773 -13.38729 -13.12864 -13.01386 -12.87645 -12.81587 -12.59218 -12.51435 -12.26227 -12.24023 -12.13061 -11.95273 -11.80887 -11.56597 -11.33681 -11.09822 -10.93441 -10.81182 -10.52693 -10.46534 -10.06218 -9.12521 -8.67616 -7.86468 -5.31635 1.08489 1.47096 1.49097 1.55505 1.56953 1.86158 2.08203 2.15683 2.51359 3.16493 3.28201 3.49314 3.51000 3.59193 3.62443 3.98333 4.00722 4.03325 4.05622 4.10579 4.15241 4.25623 4.35289 4.42105 4.46655 4.52065 4.58824 4.62072 4.66529 4.74483 4.78735 4.86849 4.90305 4.91398 4.93398 5.02005 5.03766 5.07444 5.11858 5.17343 5.24229 5.34993 5.38765 5.40398 5.49430 5.58557 5.67915 5.79652 5.89135 6.24591 6.39459 6.51632 7.15704 7.16674 7.18467 7.87528 8.38837 9.19657 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010850 B = 0.002506 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.040840 B =11168.398939 C =13025.125621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.040 4.040 3 C -0.045 4.045 4 N -0.455 5.455 5 C 0.195 3.805 6 N -0.526 5.526 7 C -0.019 4.019 8 C -0.103 4.103 9 H 0.119 0.881 10 C 0.524 3.476 11 O -0.574 6.574 12 N -0.717 5.717 13 C 0.138 3.862 14 C -0.101 4.101 15 H 0.076 0.924 16 C -0.097 4.097 17 C -0.131 4.131 18 C 0.172 3.828 19 N -0.610 5.610 20 C -0.259 4.259 21 H 0.071 0.929 22 C -0.052 4.052 23 N -0.936 5.936 24 Si 0.964 3.036 25 H -0.287 1.287 26 H -0.298 1.298 27 H -0.267 1.267 28 C 0.152 3.848 29 C -0.110 4.110 30 C 0.104 3.896 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.208 0.792 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.411 0.589 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.050 0.950 45 H -0.007 1.007 46 H 0.249 0.751 47 H 0.007 0.993 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.106 0.894 51 H 0.119 0.881 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.061 17.771 -15.045 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.168 4.168 3 C -0.179 4.179 4 N -0.137 5.137 5 C -0.068 4.068 6 N -0.247 5.247 7 C -0.058 4.058 8 C -0.124 4.124 9 H 0.137 0.863 10 C 0.311 3.689 11 O -0.454 6.454 12 N -0.368 5.368 13 C 0.013 3.987 14 C -0.122 4.122 15 H 0.094 0.906 16 C -0.135 4.135 17 C -0.170 4.170 18 C 0.046 3.954 19 N -0.333 5.333 20 C -0.389 4.389 21 H 0.088 0.912 22 C -0.247 4.247 23 N -0.582 5.582 24 Si 0.792 3.208 25 H -0.214 1.214 26 H -0.225 1.225 27 H -0.192 1.192 28 C 0.027 3.973 29 C -0.148 4.148 30 C -0.017 4.017 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.224 0.776 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.247 0.753 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.011 0.989 46 H 0.058 0.942 47 H 0.025 0.975 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.124 0.876 51 H 0.137 0.863 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.541 17.304 -15.445 25.477 hybrid contribution -0.222 -0.195 1.382 1.413 sum -10.763 17.109 -14.063 24.624 Atomic orbital electron populations 1.20045 0.86328 1.03094 1.02498 1.21368 0.97817 0.88547 1.09066 1.22830 0.82399 1.01409 1.11243 1.45587 1.07588 1.07015 1.53538 1.23227 0.94528 0.82713 1.06341 1.69897 1.00954 1.32250 1.21602 1.20078 0.85777 0.95519 1.04402 1.21392 0.91178 0.95986 1.03884 0.86298 1.20589 0.88008 0.80911 0.79416 1.90691 1.47662 1.69305 1.37718 1.46084 1.22267 1.21819 1.46644 1.21272 0.86430 0.91476 0.99481 1.21724 0.99819 0.95242 0.95382 0.90583 1.21337 0.96940 0.95432 0.99806 1.22001 1.01049 0.97579 0.96337 1.20630 0.88412 0.93731 0.92578 1.44311 1.32268 1.18762 1.37921 1.19540 0.92252 1.28491 0.98638 0.91175 1.25771 0.97348 1.03210 0.98408 1.70192 1.15532 1.41801 1.30709 0.85315 0.79127 0.78802 0.77518 1.21355 1.22469 1.19153 1.21037 0.98337 0.87624 0.90308 1.21678 0.98940 0.94091 1.00089 1.22268 0.80054 0.94114 1.05260 0.91214 0.89129 0.92393 0.77550 0.87768 0.89057 0.75297 0.90861 0.92265 0.90181 0.92598 0.92937 0.91356 0.93131 0.98902 0.94233 0.97516 0.92443 0.90976 0.87575 0.86337 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.42 71.24 0.74 -0.22 16 2 C -0.04 -0.85 7.10 41.40 0.29 -0.56 16 3 C -0.05 -0.74 11.55 83.22 0.96 0.22 16 4 N -0.45 -7.60 3.14 -513.80 -1.61 -9.21 16 5 C 0.19 4.28 7.65 138.23 1.06 5.34 16 6 N -0.53 -14.15 11.24 -175.69 -1.98 -16.13 16 7 C -0.02 -0.33 5.47 30.09 0.16 -0.17 16 8 C -0.10 -1.64 2.54 -11.35 -0.03 -1.67 16 9 H 0.12 1.63 8.12 -2.39 -0.02 1.61 16 10 C 0.52 11.51 7.13 87.66 0.63 12.14 16 11 O -0.57 -16.44 15.84 -3.03 -0.05 -16.48 16 12 N -0.72 -15.73 5.24 -463.05 -2.42 -18.16 16 13 C 0.14 3.42 5.07 86.38 0.44 3.86 16 14 C -0.10 -2.98 2.37 -10.71 -0.03 -3.00 16 15 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 16 C -0.10 -2.87 5.17 30.62 0.16 -2.71 16 17 C -0.13 -4.67 6.08 30.67 0.19 -4.48 16 18 C 0.17 8.18 5.31 86.36 0.46 8.63 16 19 N -0.61 -29.52 3.00 -699.05 -2.09 -31.61 16 20 C -0.26 -13.84 9.58 84.04 0.81 -13.03 16 21 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 22 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 23 N -0.94 -55.25 11.19 21.65 0.24 -55.00 16 24 Si 0.96 44.48 29.59 68.60 2.03 46.51 16 25 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C 0.15 5.81 5.60 86.36 0.48 6.29 16 29 C -0.11 -1.46 4.68 30.74 0.14 -1.31 16 30 C 0.10 1.01 6.98 86.47 0.60 1.61 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.10 1.82 7.94 -2.39 -0.02 1.80 16 36 H 0.09 1.69 8.11 -2.39 -0.02 1.67 16 37 H 0.41 8.13 7.40 -92.71 -0.69 7.44 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 44 H 0.05 2.75 6.04 -2.39 -0.01 2.74 16 45 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 48 H 0.06 2.06 7.14 -2.39 -0.02 2.04 16 49 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 50 H 0.11 1.37 7.80 -2.39 -0.02 1.35 16 51 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -74.34 407.06 1.82 -72.52 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.22 Total: 19.08 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 7.48 Total: 8.48 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -7.86 Total: -130.11 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.05 Total: -16.48 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -74.34 1.82 -72.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023444677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.594 kcal (2) G-P(sol) polarization free energy of solvation -74.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds