Wall clock time and date at job start Wed Apr 1 2020 04:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34849 * 125.96559 * 2 1 4 4 N 1.36309 * 106.69586 * 180.02562 * 3 2 1 5 5 C 1.35427 * 107.39546 * 359.96165 * 4 3 2 6 6 N 1.30089 * 108.62726 * 0.05705 * 5 4 3 7 7 C 1.51042 * 123.98391 * 180.12799 * 5 4 3 8 8 C 1.53400 * 108.20355 * 15.98611 * 7 5 4 9 9 H 1.08998 * 109.54922 * 71.10185 * 8 7 5 10 10 C 1.50694 * 109.51139 * 191.22154 * 8 7 5 11 11 O 1.21283 * 120.00079 * 119.76226 * 10 8 7 12 12 N 1.34771 * 120.00319 * 299.76191 * 10 8 7 13 13 C 1.46500 * 120.00372 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47282 * 179.97438 * 13 12 10 15 15 H 1.09009 * 109.49649 * 305.00479 * 14 13 12 16 16 C 1.53038 * 109.49975 * 184.94073 * 14 13 12 17 17 C 1.53042 * 109.53862 * 178.68720 * 16 14 13 18 18 C 1.53184 * 109.31362 * 61.36402 * 17 16 14 19 19 N 1.46930 * 108.77413 * 305.36245 * 18 17 16 20 20 C 1.36939 * 120.63122 * 233.60993 * 19 18 17 21 21 H 1.08001 * 119.99978 * 152.78852 * 20 19 18 22 22 C 1.38816 * 120.00190 * 332.79907 * 20 19 18 23 23 N 1.31620 * 120.00036 * 159.75226 * 22 20 19 24 24 Si 1.86798 * 119.99744 * 339.75160 * 22 20 19 25 25 H 1.48498 * 109.47490 * 94.90064 * 24 22 20 26 26 H 1.48507 * 109.46942 * 214.89869 * 24 22 20 27 27 H 1.48508 * 109.47230 * 334.89499 * 24 22 20 28 28 C 1.46933 * 118.76537 * 53.58954 * 19 18 17 29 29 C 1.53153 * 109.23700 * 311.14959 * 8 7 5 30 30 C 1.46478 * 127.78115 * 179.97438 * 4 3 2 31 31 H 1.08992 * 109.47230 * 269.94710 * 1 2 3 32 32 H 1.09000 * 109.47355 * 29.95481 * 1 2 3 33 33 H 1.09002 * 109.46998 * 149.94958 * 1 2 3 34 34 H 1.08008 * 126.65363 * 0.05688 * 3 2 1 35 35 H 1.08997 * 109.71949 * 256.30681 * 7 5 4 36 36 H 1.09000 * 109.71603 * 135.65877 * 7 5 4 37 37 H 0.97004 * 119.99728 * 359.97438 * 12 10 8 38 38 H 1.09001 * 109.46878 * 60.00501 * 13 12 10 39 39 H 1.08991 * 109.47130 * 300.00088 * 13 12 10 40 40 H 1.08999 * 109.45616 * 298.70537 * 16 14 13 41 41 H 1.08993 * 109.46481 * 58.67343 * 16 14 13 42 42 H 1.09003 * 109.49304 * 181.31225 * 17 16 14 43 43 H 1.08995 * 109.49403 * 301.40714 * 17 16 14 44 44 H 1.08992 * 109.59093 * 65.15397 * 18 17 16 45 45 H 1.09003 * 109.58656 * 185.57802 * 18 17 16 46 46 H 0.97002 * 119.99844 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.61786 * 186.63965 * 28 19 18 48 48 H 1.09003 * 109.55760 * 66.21483 * 28 19 18 49 49 H 1.08998 * 109.47041 * 189.48663 * 29 8 7 50 50 H 1.08997 * 109.46466 * 309.47746 * 29 8 7 51 51 H 1.08998 * 109.57798 * 77.29217 * 30 4 3 52 52 H 1.09002 * 109.57863 * 316.87862 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0914 0.0000 4 7 3.5857 0.6416 -0.0006 5 6 3.5414 -0.7120 -0.0001 6 7 2.2957 -1.0869 -0.0004 7 6 4.7655 -1.5967 0.0024 8 6 5.9739 -0.7419 0.4053 9 1 5.9052 -0.4890 1.4633 10 6 7.2431 -1.5143 0.1538 11 8 8.0743 -1.0810 -0.6159 12 7 7.4547 -2.6866 0.7841 13 6 8.6884 -3.4378 0.5392 14 6 8.6783 -4.7207 1.3727 15 1 8.5226 -4.4714 2.4224 16 6 10.0173 -5.4443 1.2128 17 6 10.0205 -6.7109 2.0719 18 6 8.9051 -7.6476 1.5974 19 7 7.6328 -6.9127 1.6106 20 6 6.5471 -7.4092 2.2814 21 1 5.7959 -6.7357 2.6665 22 6 6.4122 -8.7784 2.4666 23 7 5.6273 -9.2397 3.4170 24 14 7.3448 -9.9659 1.3668 25 1 8.6159 -10.3578 2.0269 26 1 6.5165 -11.1756 1.1299 27 1 7.6431 -9.3084 0.0690 28 6 7.5471 -5.6345 0.8910 29 6 5.9834 0.5430 -0.4281 30 6 4.8149 1.4383 -0.0013 31 1 -0.3633 -0.0009 1.0276 32 1 -0.3634 0.8904 -0.5131 33 1 -0.3633 -0.8895 -0.5146 34 1 1.9763 2.1222 0.0009 35 1 4.9230 -2.0095 -0.9941 36 1 4.6325 -2.4066 0.7197 37 1 6.7901 -3.0330 1.4000 38 1 9.5469 -2.8284 0.8215 39 1 8.7552 -3.6918 -0.5186 40 1 10.1613 -5.7147 0.1668 41 1 10.8258 -4.7870 1.5325 42 1 10.9830 -7.2134 1.9756 43 1 9.8519 -6.4434 3.1149 44 1 9.1199 -7.9881 0.5846 45 1 8.8386 -8.5052 2.2670 46 1 5.5333 -10.1965 3.5466 47 1 6.5853 -5.1637 1.0945 48 1 7.6507 -5.8109 -0.1796 49 1 6.9230 1.0721 -0.2693 50 1 5.8819 0.2919 -1.4839 51 1 4.9990 1.8267 1.0003 52 1 4.7133 2.2659 -0.7034 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023444678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:39 Heat of formation + Delta-G solvation = 30.397186 kcal Electronic energy + Delta-G solvation = -30770.921011 eV Core-core repulsion = 26771.111014 eV Total energy + Delta-G solvation = -3999.809997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.55966 -40.11827 -38.22358 -36.61376 -35.05258 -33.69799 -32.97632 -31.73966 -30.98387 -30.75446 -29.18379 -27.58070 -25.94479 -25.27877 -24.31963 -23.14704 -22.00947 -21.44057 -20.75615 -20.19841 -19.46113 -19.25042 -17.32158 -17.14169 -16.67155 -16.24599 -15.75911 -15.68232 -15.36796 -14.79926 -14.50651 -14.38260 -14.09862 -13.96769 -13.86059 -13.82703 -13.47177 -13.24217 -13.16986 -12.78649 -12.64305 -12.49650 -12.46323 -12.18298 -12.10549 -11.92139 -11.70288 -11.55475 -11.49862 -11.44953 -10.84658 -10.63195 -10.56465 -10.17752 -10.06285 -10.00840 -9.81686 -9.68780 -9.68198 -9.44883 -9.08751 -8.63690 -8.35964 -7.00058 -5.96157 -3.32592 1.83691 2.45131 2.52197 2.93525 3.03574 3.31423 3.48444 3.50770 3.91441 4.13175 4.22243 4.25555 4.51926 4.66156 4.71380 4.75622 4.79522 4.83579 5.01588 5.06932 5.12687 5.17128 5.18591 5.24022 5.35741 5.40030 5.40795 5.53646 5.57388 5.58190 5.70394 5.72077 5.74091 5.76934 5.88985 5.97940 6.06281 6.08280 6.12776 6.26343 6.33541 6.38602 6.52499 6.53840 6.63166 6.65743 6.67904 6.93554 6.97177 7.41445 7.93416 7.98406 8.08619 8.30495 8.91653 9.70353 10.07609 11.19639 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.002649 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.459310 B =10567.412266 C =12636.977672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.003 4.003 3 C -0.057 4.057 4 N -0.457 5.457 5 C 0.215 3.785 6 N -0.480 5.480 7 C -0.026 4.026 8 C -0.113 4.113 9 H 0.105 0.895 10 C 0.521 3.479 11 O -0.543 6.543 12 N -0.720 5.720 13 C 0.127 3.873 14 C -0.120 4.120 15 H 0.078 0.922 16 C -0.100 4.100 17 C -0.134 4.134 18 C 0.124 3.876 19 N -0.605 5.605 20 C -0.262 4.262 21 H 0.086 0.914 22 C 0.024 3.976 23 N -0.908 5.908 24 Si 0.883 3.117 25 H -0.290 1.290 26 H -0.304 1.304 27 H -0.270 1.270 28 C 0.156 3.844 29 C -0.115 4.115 30 C 0.104 3.896 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.173 0.827 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.406 0.594 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.025 0.975 45 H 0.071 0.929 46 H 0.263 0.737 47 H 0.060 0.940 48 H 0.024 0.976 49 H 0.101 0.899 50 H 0.083 0.917 51 H 0.086 0.914 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.127 23.210 -6.086 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.132 4.132 3 C -0.190 4.190 4 N -0.141 5.141 5 C -0.048 4.048 6 N -0.199 5.199 7 C -0.065 4.065 8 C -0.135 4.135 9 H 0.123 0.877 10 C 0.307 3.693 11 O -0.420 6.420 12 N -0.371 5.371 13 C 0.003 3.997 14 C -0.141 4.141 15 H 0.096 0.904 16 C -0.139 4.139 17 C -0.174 4.174 18 C -0.001 4.001 19 N -0.329 5.329 20 C -0.390 4.390 21 H 0.103 0.897 22 C -0.175 4.175 23 N -0.551 5.551 24 Si 0.714 3.286 25 H -0.217 1.217 26 H -0.232 1.232 27 H -0.195 1.195 28 C 0.030 3.970 29 C -0.153 4.153 30 C -0.018 4.018 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.190 0.810 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.241 0.759 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.043 0.957 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.042 0.958 49 H 0.119 0.881 50 H 0.101 0.899 51 H 0.104 0.896 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.476 22.656 -6.556 23.590 hybrid contribution 0.437 -0.058 -0.160 0.469 sum 0.913 22.598 -6.716 23.592 Atomic orbital electron populations 1.20007 0.87690 1.02516 1.02158 1.20826 0.96522 0.88270 1.07619 1.22270 0.82850 1.00313 1.13570 1.45379 1.06524 1.07411 1.54772 1.23052 0.94684 0.81435 1.05591 1.69992 0.99619 1.30346 1.19989 1.20150 0.85923 0.95564 1.04855 1.21444 0.93282 0.96020 1.02726 0.87678 1.20202 0.87566 0.81244 0.80338 1.90703 1.46481 1.68719 1.36112 1.46104 1.22730 1.21803 1.46498 1.21465 0.85773 0.92046 1.00401 1.21961 0.98246 0.93716 1.00141 0.90351 1.21341 0.95552 0.96798 1.00174 1.21998 0.98758 0.96523 1.00082 1.21350 0.85762 0.94752 0.98279 1.44329 1.07849 1.21264 1.59423 1.18904 1.00876 0.91115 1.28090 0.89666 1.25263 0.97426 0.96853 0.97956 1.69830 1.41093 1.13519 1.30618 0.86945 0.78224 0.80768 0.82683 1.21749 1.23204 1.19473 1.20929 0.95552 0.86476 0.94054 1.21719 0.98030 0.94486 1.01026 1.22037 0.82025 0.94387 1.03343 0.91476 0.91563 0.91141 0.81003 0.88509 0.87628 0.75894 0.91758 0.91412 0.92322 0.92806 0.92693 0.91719 0.95691 0.91116 0.92758 0.92124 0.95838 0.88102 0.89868 0.89556 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.42 36.01 0.38 -0.21 16 2 C 0.00 -0.04 7.10 -82.72 -0.59 -0.62 16 3 C -0.06 -0.55 11.55 -16.76 -0.19 -0.75 16 4 N -0.46 -4.42 3.13 -113.75 -0.36 -4.78 16 5 C 0.21 2.58 7.65 -155.24 -1.19 1.39 16 6 N -0.48 -6.90 11.24 -6.88 -0.08 -6.98 16 7 C -0.03 -0.26 5.47 -27.51 -0.15 -0.41 16 8 C -0.11 -0.97 2.55 -91.49 -0.23 -1.20 16 9 H 0.11 0.77 8.12 -51.93 -0.42 0.35 16 10 C 0.52 5.89 7.13 -10.99 -0.08 5.81 16 11 O -0.54 -7.86 15.83 5.55 0.09 -7.77 16 12 N -0.72 -8.05 5.24 -60.30 -0.32 -8.36 16 13 C 0.13 1.58 5.07 -4.04 -0.02 1.56 16 14 C -0.12 -1.73 2.37 -90.50 -0.21 -1.94 16 15 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 16 C -0.10 -1.43 5.17 -26.69 -0.14 -1.57 16 17 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 18 C 0.12 2.62 4.19 -3.71 -0.02 2.61 16 19 N -0.61 -13.77 2.77 -172.32 -0.48 -14.25 16 20 C -0.26 -7.11 10.04 -15.06 -0.15 -7.26 16 21 H 0.09 2.45 8.05 -52.49 -0.42 2.03 16 22 C 0.02 0.69 5.24 -17.43 -0.09 0.59 16 23 N -0.91 -27.58 13.97 55.49 0.78 -26.81 16 24 Si 0.88 22.27 24.35 -169.99 -4.14 18.13 16 25 H -0.29 -7.06 6.70 56.52 0.38 -6.68 16 26 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 27 H -0.27 -6.67 6.46 56.52 0.36 -6.31 16 28 C 0.16 2.82 5.60 -3.71 -0.02 2.80 16 29 C -0.11 -0.86 4.67 -26.51 -0.12 -0.98 16 30 C 0.10 0.66 6.98 -3.91 -0.03 0.63 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 36 H 0.11 1.05 7.95 -51.93 -0.41 0.63 16 37 H 0.41 4.15 7.42 -40.82 -0.30 3.85 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.03 0.53 6.98 -51.93 -0.36 0.17 16 45 H 0.07 1.66 4.50 -51.93 -0.23 1.43 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.06 1.06 7.13 -51.93 -0.37 0.69 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.10 0.72 7.79 -51.93 -0.40 0.31 16 50 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 51 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 400.47 15.07 6.04 6.04 Total: -1.00 -34.85 400.47 -10.38 -45.23 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.89 Total: 1.54 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -3.02 Total: -1.98 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.45 Total: -61.18 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.77 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.14 Total: 18.13 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.85 -10.38 -45.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023444678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.626 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds