Wall clock time and date at job start Wed Apr 1 2020 04:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34849 * 125.96559 * 2 1 4 4 N 1.36309 * 106.69586 * 180.02562 * 3 2 1 5 5 C 1.35427 * 107.39546 * 359.96165 * 4 3 2 6 6 N 1.30089 * 108.62726 * 0.05705 * 5 4 3 7 7 C 1.51042 * 123.98391 * 180.12799 * 5 4 3 8 8 C 1.53400 * 108.20355 * 15.98611 * 7 5 4 9 9 H 1.08998 * 109.54922 * 71.10185 * 8 7 5 10 10 C 1.50694 * 109.51139 * 191.22154 * 8 7 5 11 11 O 1.21283 * 120.00079 * 119.76226 * 10 8 7 12 12 N 1.34771 * 120.00319 * 299.76191 * 10 8 7 13 13 C 1.46500 * 120.00372 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47282 * 179.97438 * 13 12 10 15 15 H 1.09009 * 109.49649 * 305.00479 * 14 13 12 16 16 C 1.53038 * 109.49975 * 184.94073 * 14 13 12 17 17 C 1.53042 * 109.53862 * 178.68720 * 16 14 13 18 18 C 1.53184 * 109.31362 * 61.36402 * 17 16 14 19 19 N 1.46930 * 108.77413 * 305.36245 * 18 17 16 20 20 C 1.36939 * 120.63122 * 233.60993 * 19 18 17 21 21 H 1.08001 * 119.99978 * 152.78852 * 20 19 18 22 22 C 1.38816 * 120.00190 * 332.79907 * 20 19 18 23 23 N 1.31620 * 120.00036 * 159.75226 * 22 20 19 24 24 Si 1.86798 * 119.99744 * 339.75160 * 22 20 19 25 25 H 1.48498 * 109.47490 * 94.90064 * 24 22 20 26 26 H 1.48507 * 109.46942 * 214.89869 * 24 22 20 27 27 H 1.48508 * 109.47230 * 334.89499 * 24 22 20 28 28 C 1.46933 * 118.76537 * 53.58954 * 19 18 17 29 29 C 1.53153 * 109.23700 * 311.14959 * 8 7 5 30 30 C 1.46478 * 127.78115 * 179.97438 * 4 3 2 31 31 H 1.08992 * 109.47230 * 269.94710 * 1 2 3 32 32 H 1.09000 * 109.47355 * 29.95481 * 1 2 3 33 33 H 1.09002 * 109.46998 * 149.94958 * 1 2 3 34 34 H 1.08008 * 126.65363 * 0.05688 * 3 2 1 35 35 H 1.08997 * 109.71949 * 256.30681 * 7 5 4 36 36 H 1.09000 * 109.71603 * 135.65877 * 7 5 4 37 37 H 0.97004 * 119.99728 * 359.97438 * 12 10 8 38 38 H 1.09001 * 109.46878 * 60.00501 * 13 12 10 39 39 H 1.08991 * 109.47130 * 300.00088 * 13 12 10 40 40 H 1.08999 * 109.45616 * 298.70537 * 16 14 13 41 41 H 1.08993 * 109.46481 * 58.67343 * 16 14 13 42 42 H 1.09003 * 109.49304 * 181.31225 * 17 16 14 43 43 H 1.08995 * 109.49403 * 301.40714 * 17 16 14 44 44 H 1.08992 * 109.59093 * 65.15397 * 18 17 16 45 45 H 1.09003 * 109.58656 * 185.57802 * 18 17 16 46 46 H 0.97002 * 119.99844 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.61786 * 186.63965 * 28 19 18 48 48 H 1.09003 * 109.55760 * 66.21483 * 28 19 18 49 49 H 1.08998 * 109.47041 * 189.48663 * 29 8 7 50 50 H 1.08997 * 109.46466 * 309.47746 * 29 8 7 51 51 H 1.08998 * 109.57798 * 77.29217 * 30 4 3 52 52 H 1.09002 * 109.57863 * 316.87862 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0914 0.0000 4 7 3.5857 0.6416 -0.0006 5 6 3.5414 -0.7120 -0.0001 6 7 2.2957 -1.0869 -0.0004 7 6 4.7655 -1.5967 0.0024 8 6 5.9739 -0.7419 0.4053 9 1 5.9052 -0.4890 1.4633 10 6 7.2431 -1.5143 0.1538 11 8 8.0743 -1.0810 -0.6159 12 7 7.4547 -2.6866 0.7841 13 6 8.6884 -3.4378 0.5392 14 6 8.6783 -4.7207 1.3727 15 1 8.5226 -4.4714 2.4224 16 6 10.0173 -5.4443 1.2128 17 6 10.0205 -6.7109 2.0719 18 6 8.9051 -7.6476 1.5974 19 7 7.6328 -6.9127 1.6106 20 6 6.5471 -7.4092 2.2814 21 1 5.7959 -6.7357 2.6665 22 6 6.4122 -8.7784 2.4666 23 7 5.6273 -9.2397 3.4170 24 14 7.3448 -9.9659 1.3668 25 1 8.6159 -10.3578 2.0269 26 1 6.5165 -11.1756 1.1299 27 1 7.6431 -9.3084 0.0690 28 6 7.5471 -5.6345 0.8910 29 6 5.9834 0.5430 -0.4281 30 6 4.8149 1.4383 -0.0013 31 1 -0.3633 -0.0009 1.0276 32 1 -0.3634 0.8904 -0.5131 33 1 -0.3633 -0.8895 -0.5146 34 1 1.9763 2.1222 0.0009 35 1 4.9230 -2.0095 -0.9941 36 1 4.6325 -2.4066 0.7197 37 1 6.7901 -3.0330 1.4000 38 1 9.5469 -2.8284 0.8215 39 1 8.7552 -3.6918 -0.5186 40 1 10.1613 -5.7147 0.1668 41 1 10.8258 -4.7870 1.5325 42 1 10.9830 -7.2134 1.9756 43 1 9.8519 -6.4434 3.1149 44 1 9.1199 -7.9881 0.5846 45 1 8.8386 -8.5052 2.2670 46 1 5.5333 -10.1965 3.5466 47 1 6.5853 -5.1637 1.0945 48 1 7.6507 -5.8109 -0.1796 49 1 6.9230 1.0721 -0.2693 50 1 5.8819 0.2919 -1.4839 51 1 4.9990 1.8267 1.0003 52 1 4.7133 2.2659 -0.7034 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023444678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:38 Heat of formation + Delta-G solvation = 7.802307 kcal Electronic energy + Delta-G solvation = -30771.900798 eV Core-core repulsion = 26771.111014 eV Total energy + Delta-G solvation = -4000.789785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.32806 -41.06905 -39.61423 -37.40197 -36.30907 -34.80464 -34.30573 -32.80450 -32.45894 -32.09602 -29.96051 -28.38387 -27.34302 -26.81719 -25.05218 -24.01953 -23.64580 -22.72746 -21.62382 -21.18364 -20.62097 -20.08254 -18.76674 -18.06710 -17.84886 -17.25318 -17.08164 -16.65345 -16.61626 -16.01893 -15.55933 -15.24625 -15.20928 -15.11762 -14.94802 -14.80649 -14.75044 -14.62974 -14.17766 -13.96027 -13.87378 -13.64133 -13.41925 -13.27754 -13.16956 -13.12947 -12.81495 -12.60507 -12.54774 -12.29066 -12.15929 -12.13581 -12.07827 -11.68784 -11.56050 -11.34212 -11.25481 -10.93100 -10.82112 -10.66493 -10.46983 -10.06702 -9.12820 -8.91648 -8.15817 -5.46879 1.07973 1.28794 1.40935 1.49071 1.54410 1.86185 2.08236 2.15944 2.41620 3.06572 3.16586 3.32630 3.49291 3.51346 3.59736 3.86776 3.97288 3.99638 4.02137 4.08076 4.14275 4.25331 4.26765 4.34650 4.39972 4.46882 4.51937 4.55287 4.63298 4.66243 4.74546 4.80623 4.83637 4.85652 4.87490 4.90688 4.99921 5.02963 5.07666 5.09495 5.16816 5.17322 5.27678 5.30577 5.37945 5.45504 5.59463 5.87478 5.88933 6.13662 6.25020 6.49819 6.93102 7.17140 7.18029 7.63895 8.04288 9.03975 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.002649 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.459310 B =10567.412266 C =12636.977672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.041 4.041 3 C -0.042 4.042 4 N -0.454 5.454 5 C 0.194 3.806 6 N -0.531 5.531 7 C -0.021 4.021 8 C -0.101 4.101 9 H 0.124 0.876 10 C 0.525 3.475 11 O -0.572 6.572 12 N -0.719 5.719 13 C 0.137 3.863 14 C -0.105 4.105 15 H 0.074 0.926 16 C -0.098 4.098 17 C -0.127 4.127 18 C 0.115 3.885 19 N -0.620 5.620 20 C -0.244 4.244 21 H 0.056 0.944 22 C -0.036 4.036 23 N -0.958 5.958 24 Si 0.945 3.055 25 H -0.277 1.277 26 H -0.315 1.315 27 H -0.261 1.261 28 C 0.152 3.848 29 C -0.110 4.110 30 C 0.104 3.896 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.210 0.790 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.410 0.590 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.030 0.970 45 H 0.044 0.956 46 H 0.260 0.740 47 H 0.057 0.943 48 H 0.027 0.973 49 H 0.110 0.890 50 H 0.068 0.932 51 H 0.109 0.891 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.182 26.113 -6.900 27.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.170 4.170 3 C -0.176 4.176 4 N -0.137 5.137 5 C -0.068 4.068 6 N -0.251 5.251 7 C -0.061 4.061 8 C -0.123 4.123 9 H 0.141 0.859 10 C 0.312 3.688 11 O -0.452 6.452 12 N -0.370 5.370 13 C 0.013 3.987 14 C -0.125 4.125 15 H 0.092 0.908 16 C -0.136 4.136 17 C -0.166 4.166 18 C -0.009 4.009 19 N -0.344 5.344 20 C -0.374 4.374 21 H 0.074 0.926 22 C -0.231 4.231 23 N -0.604 5.604 24 Si 0.774 3.226 25 H -0.204 1.204 26 H -0.244 1.244 27 H -0.186 1.186 28 C 0.027 3.973 29 C -0.148 4.148 30 C -0.017 4.017 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.227 0.773 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.246 0.754 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.045 0.955 49 H 0.128 0.872 50 H 0.087 0.913 51 H 0.127 0.873 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.579 25.597 -7.389 26.767 hybrid contribution -0.236 -0.866 0.088 0.902 sum 2.343 24.731 -7.301 25.893 Atomic orbital electron populations 1.20046 0.86430 1.03035 1.02500 1.21377 0.97818 0.88580 1.09204 1.22832 0.82365 1.01346 1.11051 1.45604 1.07671 1.06856 1.53535 1.23178 0.94412 0.82795 1.06451 1.69914 1.01181 1.32482 1.21533 1.20080 0.86252 0.95587 1.04132 1.21390 0.90934 0.95905 1.04038 0.85860 1.20551 0.87910 0.80952 0.79433 1.90691 1.47727 1.69420 1.37352 1.46120 1.22559 1.21832 1.46530 1.21300 0.86669 0.91190 0.99581 1.21742 0.97009 0.93743 0.99991 0.90805 1.21362 0.96067 0.95994 1.00187 1.21908 0.98018 0.96904 0.99791 1.21434 0.86465 0.95038 0.98005 1.44480 1.07430 1.22709 1.59804 1.18892 1.01190 0.90675 1.26636 0.92596 1.25873 0.99234 0.98638 0.99340 1.69959 1.44091 1.13573 1.32785 0.85941 0.77291 0.78207 0.81134 1.20353 1.24404 1.18595 1.21113 0.97313 0.85154 0.93751 1.21687 0.99131 0.94070 0.99921 1.22307 0.79912 0.94064 1.05391 0.91181 0.88961 0.92680 0.77285 0.89551 0.88238 0.75397 0.90539 0.91878 0.91565 0.89645 0.90043 0.92659 0.95202 0.93750 0.93085 0.92431 0.95535 0.87181 0.91285 0.87306 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.42 71.24 0.74 -0.35 16 2 C -0.04 -0.97 7.10 41.40 0.29 -0.67 16 3 C -0.04 -0.72 11.55 83.22 0.96 0.24 16 4 N -0.45 -7.89 3.13 -513.79 -1.61 -9.50 16 5 C 0.19 4.63 7.65 138.23 1.06 5.69 16 6 N -0.53 -15.64 11.24 -175.69 -1.98 -17.62 16 7 C -0.02 -0.43 5.47 30.09 0.16 -0.26 16 8 C -0.10 -1.59 2.55 -11.36 -0.03 -1.62 16 9 H 0.12 1.53 8.12 -2.39 -0.02 1.51 16 10 C 0.52 11.08 7.13 87.66 0.63 11.71 16 11 O -0.57 -15.65 15.83 -3.04 -0.05 -15.70 16 12 N -0.72 -15.05 5.24 -463.08 -2.43 -17.48 16 13 C 0.14 3.07 5.07 86.38 0.44 3.51 16 14 C -0.10 -2.79 2.37 -10.72 -0.03 -2.81 16 15 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 16 C -0.10 -2.45 5.17 30.62 0.16 -2.29 16 17 C -0.13 -3.92 6.08 30.67 0.19 -3.73 16 18 C 0.12 4.72 4.19 86.36 0.36 5.08 16 19 N -0.62 -28.04 2.77 -699.09 -1.94 -29.98 16 20 C -0.24 -13.60 10.04 84.03 0.84 -12.76 16 21 H 0.06 3.37 8.05 -2.91 -0.02 3.35 16 22 C -0.04 -2.12 5.24 84.86 0.44 -1.68 16 23 N -0.96 -60.38 13.97 21.65 0.30 -60.08 16 24 Si 0.94 46.93 24.35 68.60 1.67 48.60 16 25 H -0.28 -13.00 6.70 99.48 0.67 -12.33 16 26 H -0.31 -16.05 7.11 99.48 0.71 -15.35 16 27 H -0.26 -12.43 6.46 99.48 0.64 -11.79 16 28 C 0.15 5.35 5.60 86.36 0.48 5.83 16 29 C -0.11 -1.41 4.67 30.74 0.14 -1.27 16 30 C 0.10 0.97 6.98 86.47 0.60 1.57 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.21 1.77 8.06 -2.91 -0.02 1.74 16 35 H 0.09 1.87 8.11 -2.39 -0.02 1.85 16 36 H 0.10 2.06 7.95 -2.39 -0.02 2.04 16 37 H 0.41 8.04 7.42 -92.71 -0.69 7.35 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 42 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.03 1.20 6.98 -2.39 -0.02 1.18 16 45 H 0.04 2.05 4.50 -2.39 -0.01 2.03 16 46 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 47 H 0.06 2.03 7.13 -2.39 -0.02 2.01 16 48 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.11 1.26 7.79 -2.39 -0.02 1.25 16 50 H 0.07 1.10 8.12 -2.39 -0.02 1.08 16 51 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -78.73 400.47 1.54 -77.18 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.12 Total: 18.39 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 7.45 Total: 6.19 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -7.65 Total: -134.66 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.05 Total: -15.70 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.67 Total: 48.60 kcal Total: -78.73 1.54 -77.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023444678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.985 kcal (2) G-P(sol) polarization free energy of solvation -78.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds