Wall clock time and date at job start Wed Apr 1 2020 04:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34847 * 125.96380 * 2 1 4 4 N 1.36312 * 106.69127 * 180.02562 * 3 2 1 5 5 C 1.35421 * 107.39901 * 0.04930 * 4 3 2 6 6 N 1.30097 * 108.62426 * 359.93552 * 5 4 3 7 7 C 1.51042 * 123.98159 * 179.89050 * 5 4 3 8 8 C 1.53389 * 108.21416 * 344.06236 * 7 5 4 9 9 H 1.08999 * 109.55120 * 288.86910 * 8 7 5 10 10 C 1.50697 * 109.51240 * 168.74342 * 8 7 5 11 11 O 1.21279 * 120.00205 * 240.23655 * 10 8 7 12 12 N 1.34779 * 119.99859 * 60.23959 * 10 8 7 13 13 C 1.46501 * 120.00240 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47108 * 179.97438 * 13 12 10 15 15 H 1.08993 * 109.49837 * 304.92937 * 14 13 12 16 16 C 1.53043 * 109.49492 * 184.83315 * 14 13 12 17 17 C 1.53038 * 109.53784 * 178.68498 * 16 14 13 18 18 C 1.52765 * 109.38424 * 61.24001 * 17 16 14 19 19 N 1.46924 * 109.00726 * 305.59230 * 18 17 16 20 20 C 1.36940 * 120.62840 * 233.58467 * 19 18 17 21 21 H 1.08001 * 120.00339 * 151.82102 * 20 19 18 22 22 C 1.38817 * 119.99931 * 331.81335 * 20 19 18 23 23 N 1.31618 * 119.99811 * 335.49820 * 22 20 19 24 24 Si 1.86796 * 120.00003 * 155.50111 * 22 20 19 25 25 H 1.48502 * 109.46996 * 180.02562 * 24 22 20 26 26 H 1.48499 * 109.46664 * 299.99756 * 24 22 20 27 27 H 1.48490 * 109.47479 * 59.99634 * 24 22 20 28 28 C 1.46924 * 118.74146 * 53.30696 * 19 18 17 29 29 C 1.53154 * 109.24218 * 48.81829 * 8 7 5 30 30 C 1.46476 * 127.77688 * 180.08451 * 4 3 2 31 31 H 1.09001 * 109.46658 * 90.00383 * 1 2 3 32 32 H 1.08999 * 109.47083 * 209.99733 * 1 2 3 33 33 H 1.08989 * 109.47354 * 330.00445 * 1 2 3 34 34 H 1.08009 * 126.65408 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.71655 * 224.37931 * 7 5 4 36 36 H 1.09003 * 109.71480 * 103.74183 * 7 5 4 37 37 H 0.96998 * 119.99495 * 359.97438 * 12 10 8 38 38 H 1.09000 * 109.47082 * 59.98925 * 13 12 10 39 39 H 1.09006 * 109.46510 * 299.99865 * 13 12 10 40 40 H 1.09000 * 109.46416 * 298.70532 * 16 14 13 41 41 H 1.09001 * 109.45583 * 58.66502 * 16 14 13 42 42 H 1.08999 * 109.49855 * 181.31880 * 17 16 14 43 43 H 1.09003 * 109.49786 * 301.38523 * 17 16 14 44 44 H 1.08997 * 109.50761 * 185.70928 * 18 17 16 45 45 H 1.08995 * 109.43030 * 65.42464 * 18 17 16 46 46 H 0.97008 * 119.99855 * 354.23961 * 23 22 20 47 47 H 1.09002 * 109.58713 * 66.43004 * 28 19 18 48 48 H 1.09002 * 109.58725 * 186.85660 * 28 19 18 49 49 H 1.08995 * 109.46476 * 50.51613 * 29 8 7 50 50 H 1.08993 * 109.47009 * 170.51497 * 29 8 7 51 51 H 1.09003 * 109.58428 * 43.05267 * 30 4 3 52 52 H 1.09000 * 109.69909 * 282.70407 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0914 0.0000 4 7 3.5857 0.6415 -0.0006 5 6 3.5414 -0.7120 -0.0020 6 7 2.2956 -1.0869 -0.0010 7 6 4.7656 -1.5967 -0.0055 8 6 5.9740 -0.7415 -0.4070 9 1 5.9059 -0.4876 -1.4648 10 6 7.2432 -1.5141 -0.1555 11 8 8.0739 -1.0815 0.6149 12 7 7.4551 -2.6858 -0.7868 13 6 8.6887 -3.4373 -0.5420 14 6 8.6785 -4.7201 -1.3757 15 1 7.7743 -5.2884 -1.1577 16 6 9.9082 -5.5632 -1.0308 17 6 9.8819 -6.8618 -1.8402 18 6 9.9247 -6.5310 -3.3310 19 7 8.8321 -5.6006 -3.6462 20 6 7.9401 -5.8851 -4.6456 21 1 6.9337 -5.4960 -4.5981 22 6 8.3294 -6.6735 -5.7198 23 7 9.6005 -6.7516 -6.0521 24 14 7.0492 -7.6233 -6.6936 25 1 7.7175 -8.3826 -7.7809 26 1 6.3428 -8.5686 -5.7922 27 1 6.0699 -6.6744 -7.2813 28 6 8.7111 -4.3623 -2.8649 29 6 5.9832 0.5427 0.4275 30 6 4.8148 1.4382 0.0009 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5137 34 1 1.9763 2.1222 -0.0004 35 1 4.6326 -2.4056 -0.7238 36 1 4.9228 -2.0108 0.9905 37 1 6.7905 -3.0320 -1.4028 38 1 8.7550 -3.6921 0.5157 39 1 9.5474 -2.8275 -0.8232 40 1 10.8118 -5.0033 -1.2719 41 1 9.9002 -5.7985 0.0335 42 1 10.7456 -7.4723 -1.5768 43 1 8.9669 -7.4108 -1.6176 44 1 9.8041 -7.4462 -3.9105 45 1 10.8809 -6.0667 -3.5720 46 1 10.2548 -6.1951 -5.6013 47 1 9.5664 -3.7175 -3.0672 48 1 7.7899 -3.8470 -3.1371 49 1 5.8811 0.2906 1.4830 50 1 6.9229 1.0719 0.2696 51 1 4.7131 2.2655 0.7033 52 1 5.0005 1.8291 -0.9995 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023444680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:45 Heat of formation + Delta-G solvation = 0.855184 kcal Electronic energy + Delta-G solvation = -30632.385731 eV Core-core repulsion = 26631.294696 eV Total energy + Delta-G solvation = -4001.091034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.34535 -41.11040 -39.61207 -37.43246 -36.43511 -34.92499 -34.31989 -32.47631 -32.24801 -31.94597 -29.95392 -28.35719 -27.04934 -26.81743 -25.05942 -24.11387 -23.72312 -22.44565 -21.66862 -21.16828 -20.56121 -20.12031 -19.37875 -18.11545 -17.87406 -17.10651 -16.80185 -16.56964 -16.22205 -16.09702 -15.54240 -15.43510 -15.25632 -15.19656 -14.93296 -14.87581 -14.75892 -14.64948 -14.02184 -13.90519 -13.73177 -13.63591 -13.44261 -13.27052 -13.14306 -12.83884 -12.69835 -12.61455 -12.43189 -12.28870 -12.15771 -11.97689 -11.92284 -11.75649 -11.69390 -11.49134 -11.10725 -10.96518 -10.85997 -10.48570 -10.46102 -10.11845 -9.14317 -8.92357 -8.23378 -5.39760 1.06584 1.50659 1.58911 1.65922 1.84031 1.84299 2.06259 2.10619 2.65750 3.13208 3.21829 3.46065 3.46725 3.50379 3.56833 3.87141 3.93829 3.94572 3.98475 4.05659 4.11442 4.22995 4.27172 4.33477 4.43118 4.46541 4.50001 4.50721 4.61426 4.66679 4.71293 4.78008 4.82098 4.84088 4.85167 4.90466 5.00134 5.02139 5.04456 5.11462 5.16174 5.22232 5.24797 5.30474 5.36921 5.41611 5.55808 5.84289 5.87551 6.22551 6.39845 6.45487 7.06792 7.12835 7.14936 7.78524 8.23705 9.01198 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010923 B = 0.002505 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.829118 B =11175.999889 C =13005.084435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.454 5.454 5 C 0.194 3.806 6 N -0.526 5.526 7 C -0.018 4.018 8 C -0.103 4.103 9 H 0.119 0.881 10 C 0.524 3.476 11 O -0.573 6.573 12 N -0.718 5.718 13 C 0.138 3.862 14 C -0.101 4.101 15 H 0.074 0.926 16 C -0.097 4.097 17 C -0.126 4.126 18 C 0.152 3.848 19 N -0.617 5.617 20 C -0.353 4.353 21 H 0.054 0.946 22 C -0.077 4.077 23 N -0.944 5.944 24 Si 1.112 2.888 25 H -0.294 1.294 26 H -0.280 1.280 27 H -0.275 1.275 28 C 0.155 3.845 29 C -0.110 4.110 30 C 0.104 3.896 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.208 0.792 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.410 0.590 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.041 0.959 45 H 0.001 0.999 46 H 0.253 0.747 47 H 0.008 0.992 48 H 0.054 0.946 49 H 0.072 0.928 50 H 0.106 0.894 51 H 0.119 0.881 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.210 17.622 15.627 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.168 4.168 3 C -0.178 4.178 4 N -0.137 5.137 5 C -0.069 4.069 6 N -0.247 5.247 7 C -0.058 4.058 8 C -0.124 4.124 9 H 0.136 0.864 10 C 0.311 3.689 11 O -0.453 6.453 12 N -0.369 5.369 13 C 0.014 3.986 14 C -0.122 4.122 15 H 0.092 0.908 16 C -0.135 4.135 17 C -0.165 4.165 18 C 0.026 3.974 19 N -0.342 5.342 20 C -0.482 4.482 21 H 0.072 0.928 22 C -0.273 4.273 23 N -0.587 5.587 24 Si 0.937 3.063 25 H -0.221 1.221 26 H -0.206 1.206 27 H -0.201 1.201 28 C 0.029 3.971 29 C -0.148 4.148 30 C -0.017 4.017 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.225 0.775 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.246 0.754 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.019 0.981 46 H 0.063 0.937 47 H 0.026 0.974 48 H 0.072 0.928 49 H 0.091 0.909 50 H 0.124 0.876 51 H 0.137 0.863 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.980 16.151 14.924 24.579 hybrid contribution 0.508 1.476 0.506 1.641 sum -10.472 17.627 15.430 25.661 Atomic orbital electron populations 1.20045 0.86286 1.03117 1.02517 1.21374 0.97838 0.88526 1.09037 1.22840 0.82376 1.01433 1.11197 1.45583 1.07604 1.06991 1.53538 1.23204 0.94510 0.82718 1.06436 1.69896 1.00940 1.32278 1.21573 1.20070 0.85834 0.95503 1.04353 1.21393 0.91152 0.96051 1.03845 0.86352 1.20600 0.88015 0.80852 0.79425 1.90691 1.47777 1.69256 1.37530 1.46094 1.22313 1.22095 1.46430 1.21269 0.86474 0.91397 0.99500 1.21714 0.99855 0.95426 0.95165 0.90767 1.21343 0.96905 0.95246 1.00021 1.21847 1.01462 0.97858 0.95366 1.20761 0.89008 0.93072 0.94521 1.44337 1.32963 1.18790 1.38062 1.20226 0.92599 1.34659 1.00754 0.92808 1.27140 1.01154 1.02356 0.96670 1.70902 1.03060 1.42995 1.41695 0.82885 0.72813 0.75771 0.74825 1.22060 1.20616 1.20117 1.21021 0.98233 0.87428 0.90393 1.21680 0.99012 0.94068 1.00045 1.22272 0.80026 0.94120 1.05277 0.91199 0.92382 0.89096 0.77498 0.87910 0.89052 0.75390 0.90705 0.92194 0.92337 0.89818 0.90800 0.92834 0.94083 0.98121 0.93677 0.97418 0.92768 0.90914 0.87598 0.86263 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.42 71.24 0.74 -0.22 16 2 C -0.04 -0.85 7.10 41.40 0.29 -0.56 16 3 C -0.05 -0.73 11.55 83.22 0.96 0.23 16 4 N -0.45 -7.64 3.13 -513.78 -1.61 -9.25 16 5 C 0.19 4.30 7.65 138.23 1.06 5.36 16 6 N -0.53 -14.22 11.24 -175.69 -1.98 -16.20 16 7 C -0.02 -0.34 5.47 30.09 0.16 -0.17 16 8 C -0.10 -1.66 2.55 -11.36 -0.03 -1.69 16 9 H 0.12 1.67 8.12 -2.39 -0.02 1.65 16 10 C 0.52 11.62 7.13 87.66 0.63 12.25 16 11 O -0.57 -16.42 15.83 -3.03 -0.05 -16.46 16 12 N -0.72 -16.00 5.24 -463.05 -2.42 -18.43 16 13 C 0.14 3.43 5.07 86.38 0.44 3.87 16 14 C -0.10 -2.99 2.38 -10.71 -0.03 -3.01 16 15 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 16 C -0.10 -2.81 5.17 30.62 0.16 -2.65 16 17 C -0.13 -4.43 6.06 30.53 0.19 -4.24 16 18 C 0.15 7.06 4.66 86.22 0.40 7.46 16 19 N -0.62 -29.96 2.85 -699.92 -2.00 -31.96 16 20 C -0.35 -19.26 9.49 84.03 0.80 -18.46 16 21 H 0.05 2.90 7.94 -2.91 -0.02 2.87 16 22 C -0.08 -4.34 4.70 84.86 0.40 -3.94 16 23 N -0.94 -57.50 12.42 21.65 0.27 -57.23 16 24 Si 1.11 50.56 29.98 68.60 2.06 52.61 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 28 C 0.15 5.95 5.60 86.36 0.48 6.43 16 29 C -0.11 -1.47 4.67 30.74 0.14 -1.33 16 30 C 0.10 1.01 6.98 86.47 0.60 1.62 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.10 1.84 7.95 -2.39 -0.02 1.82 16 36 H 0.09 1.71 8.11 -2.39 -0.02 1.69 16 37 H 0.41 8.40 7.42 -92.71 -0.69 7.72 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.04 2.19 6.32 -2.39 -0.02 2.17 16 45 H 0.00 0.04 7.86 -2.39 -0.02 0.02 16 46 H 0.25 15.74 6.69 -92.70 -0.62 15.12 16 47 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.05 2.02 7.13 -2.39 -0.02 2.00 16 49 H 0.07 1.14 8.12 -2.39 -0.02 1.12 16 50 H 0.11 1.37 7.79 -2.39 -0.02 1.35 16 51 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -76.24 406.00 2.04 -74.20 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.37 Total: 21.77 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 7.40 Total: 0.94 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -7.74 Total: -133.06 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.05 Total: -16.46 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.06 Total: 52.61 kcal Total: -76.24 2.04 -74.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023444680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.059 kcal (2) G-P(sol) polarization free energy of solvation -76.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds