Wall clock time and date at job start Wed Apr 1 2020 04:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34852 * 125.96722 * 2 1 4 4 N 1.36312 * 106.69048 * 180.02562 * 3 2 1 5 5 C 1.35424 * 107.39672 * 0.05536 * 4 3 2 6 6 N 1.30087 * 108.63292 * 359.92945 * 5 4 3 7 7 C 1.51051 * 123.97981 * 179.89399 * 5 4 3 8 8 C 1.53403 * 108.21108 * 344.05690 * 7 5 4 9 9 H 1.09002 * 109.54674 * 288.87128 * 8 7 5 10 10 C 1.50689 * 109.50980 * 168.74894 * 8 7 5 11 11 O 1.21279 * 120.00222 * 240.23596 * 10 8 7 12 12 N 1.34782 * 120.00224 * 60.23286 * 10 8 7 13 13 C 1.46501 * 120.00069 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.46749 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.70376 * 59.53240 * 14 13 12 16 16 C 1.53194 * 109.58480 * 179.88490 * 14 13 12 17 17 C 1.53041 * 109.31239 * 174.42077 * 16 14 13 18 18 C 1.53037 * 109.52805 * 298.63839 * 17 16 14 19 19 C 1.53166 * 109.32698 * 61.37222 * 18 17 16 20 20 N 1.46920 * 109.58725 * 299.16964 * 14 13 12 21 21 C 1.36936 * 120.62934 * 6.58861 * 20 14 13 22 22 H 1.08002 * 119.99996 * 328.56018 * 21 20 14 23 23 C 1.38820 * 120.00303 * 148.56288 * 21 20 14 24 24 N 1.31610 * 120.00306 * 162.62540 * 23 21 20 25 25 Si 1.86806 * 119.99479 * 342.62544 * 23 21 20 26 26 H 1.48496 * 109.47079 * 89.93489 * 25 23 21 27 27 H 1.48501 * 109.46465 * 209.93063 * 25 23 21 28 28 H 1.48494 * 109.47288 * 329.93253 * 25 23 21 29 29 C 1.53150 * 109.23648 * 48.81790 * 8 7 5 30 30 C 1.46468 * 127.77855 * 180.08760 * 4 3 2 31 31 H 1.08995 * 109.47546 * 89.99390 * 1 2 3 32 32 H 1.09004 * 109.47359 * 209.99792 * 1 2 3 33 33 H 1.09004 * 109.46730 * 329.99783 * 1 2 3 34 34 H 1.07995 * 126.65478 * 359.97438 * 3 2 1 35 35 H 1.08996 * 109.71314 * 224.37901 * 7 5 4 36 36 H 1.09000 * 109.71261 * 103.73488 * 7 5 4 37 37 H 0.97001 * 119.99851 * 0.02562 * 12 10 8 38 38 H 1.08997 * 109.47066 * 59.99912 * 13 12 10 39 39 H 1.08999 * 109.46888 * 299.99741 * 13 12 10 40 40 H 1.09002 * 109.49819 * 54.46996 * 16 14 13 41 41 H 1.09003 * 109.49655 * 294.37584 * 16 14 13 42 42 H 1.08998 * 109.46098 * 58.65662 * 17 16 14 43 43 H 1.09006 * 109.45514 * 178.63082 * 17 16 14 44 44 H 1.08997 * 109.49756 * 181.31243 * 18 17 16 45 45 H 1.09007 * 109.49802 * 301.41168 * 18 17 16 46 46 H 1.08996 * 109.59517 * 185.56740 * 19 18 17 47 47 H 1.08998 * 109.70674 * 65.20992 * 19 18 17 48 48 H 0.97004 * 120.00340 * 179.97438 * 24 23 21 49 49 H 1.08993 * 109.47158 * 50.52726 * 29 8 7 50 50 H 1.09009 * 109.46487 * 170.51160 * 29 8 7 51 51 H 1.09001 * 109.58469 * 43.04913 * 30 4 3 52 52 H 1.09003 * 109.58252 * 282.64120 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0914 0.0000 4 7 3.5857 0.6414 -0.0006 5 6 3.5413 -0.7121 -0.0022 6 7 2.2956 -1.0871 -0.0010 7 6 4.7655 -1.5969 -0.0056 8 6 5.9740 -0.7417 -0.4071 9 1 5.9058 -0.4878 -1.4649 10 6 7.2431 -1.5144 -0.1557 11 8 8.0739 -1.0819 0.6148 12 7 7.4549 -2.6862 -0.7870 13 6 8.6885 -3.4377 -0.5422 14 6 8.6786 -4.7199 -1.3769 15 1 8.6043 -4.4690 -2.4350 16 6 9.9689 -5.5065 -1.1250 17 6 9.8923 -6.8507 -1.8525 18 6 8.7166 -7.6628 -1.3046 19 6 7.4123 -6.9009 -1.5585 20 7 7.5332 -5.5530 -0.9864 21 6 6.5961 -5.0822 -0.1058 22 1 6.8849 -4.3895 0.6708 23 6 5.2750 -5.4954 -0.2112 24 7 4.4519 -5.3335 0.8029 25 14 4.6657 -6.2813 -1.7926 26 1 4.8614 -7.7516 -1.7221 27 1 3.2220 -5.9820 -1.9696 28 1 5.4292 -5.7349 -2.9431 29 6 5.9831 0.5423 0.4275 30 6 4.8149 1.4380 0.0010 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.9765 2.1221 -0.0004 35 1 4.6325 -2.4058 -0.7240 36 1 4.9226 -2.0110 0.9904 37 1 6.7906 -3.0320 -1.4035 38 1 8.7547 -3.6927 0.5155 39 1 9.5471 -2.8281 -0.8234 40 1 10.0874 -5.6781 -0.0551 41 1 10.8204 -4.9381 -1.4993 42 1 9.7490 -6.6787 -2.9193 43 1 10.8193 -7.4022 -1.6949 44 1 8.6766 -8.6294 -1.8067 45 1 8.8469 -7.8140 -0.2329 46 1 6.5837 -7.4264 -1.0838 47 1 7.2321 -6.8279 -2.6310 48 1 3.5287 -5.6219 0.7291 49 1 5.8811 0.2904 1.4830 50 1 6.9230 1.0716 0.2696 51 1 4.7132 2.2652 0.7034 52 1 4.9994 1.8270 -1.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024510380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:20 Heat of formation + Delta-G solvation = 37.942290 kcal Electronic energy + Delta-G solvation = -32292.787828 eV Core-core repulsion = 28293.305011 eV Total energy + Delta-G solvation = -3999.482817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.12506 -39.55699 -38.10680 -36.12359 -34.30976 -33.12349 -33.02780 -31.36183 -30.92277 -30.67260 -28.74463 -27.18369 -26.05576 -24.71072 -23.77661 -22.66535 -22.54750 -20.76978 -20.27680 -19.76239 -19.24084 -18.83937 -17.00466 -16.70731 -16.19223 -15.74563 -15.68809 -15.20905 -14.99000 -14.60220 -14.04186 -13.95721 -13.73778 -13.70795 -13.53849 -13.38241 -13.36499 -13.17657 -12.80450 -12.50788 -12.34103 -12.19398 -12.09000 -11.91277 -11.67006 -11.63736 -11.44730 -11.31872 -11.00848 -10.90449 -10.81872 -10.63664 -10.44916 -10.19931 -9.93751 -9.61598 -9.57171 -9.47330 -9.27527 -9.25137 -8.67610 -8.28375 -7.94290 -6.92453 -5.93971 -3.36529 2.24201 2.93187 3.09323 3.31224 3.37816 3.46091 3.52011 3.71917 4.43778 4.51264 4.57933 4.68354 4.78716 4.85505 5.03508 5.18816 5.24324 5.24469 5.31634 5.32483 5.39984 5.42005 5.49274 5.50938 5.59513 5.74765 5.82610 5.83821 5.86743 5.95156 5.97607 5.99244 6.10289 6.16634 6.18206 6.20519 6.29753 6.37748 6.41344 6.44322 6.46699 6.56085 6.58940 6.70471 6.74581 6.97104 7.02320 7.10942 7.41391 7.96006 8.17485 8.35757 8.44728 8.78784 8.91647 9.70101 10.08789 11.19595 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.003848 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.432803 B = 7275.102384 C = 9021.709456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.007 4.007 3 C -0.067 4.067 4 N -0.461 5.461 5 C 0.229 3.771 6 N -0.478 5.478 7 C -0.019 4.019 8 C -0.110 4.110 9 H 0.095 0.905 10 C 0.520 3.480 11 O -0.561 6.561 12 N -0.689 5.689 13 C 0.136 3.864 14 C 0.164 3.836 15 H 0.035 0.965 16 C -0.129 4.129 17 C -0.108 4.108 18 C -0.136 4.136 19 C 0.126 3.874 20 N -0.603 5.603 21 C -0.272 4.272 22 H 0.092 0.908 23 C 0.036 3.964 24 N -0.892 5.892 25 Si 0.873 3.127 26 H -0.290 1.290 27 H -0.302 1.302 28 H -0.273 1.273 29 C -0.114 4.114 30 C 0.106 3.894 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.169 0.831 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.411 0.589 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.022 0.978 48 H 0.265 0.735 49 H 0.082 0.918 50 H 0.097 0.903 51 H 0.090 0.910 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.586 10.827 -5.264 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.136 4.136 3 C -0.199 4.199 4 N -0.144 5.144 5 C -0.034 4.034 6 N -0.197 5.197 7 C -0.058 4.058 8 C -0.132 4.132 9 H 0.114 0.886 10 C 0.306 3.694 11 O -0.441 6.441 12 N -0.339 5.339 13 C 0.012 3.988 14 C 0.057 3.943 15 H 0.053 0.947 16 C -0.168 4.168 17 C -0.146 4.146 18 C -0.175 4.175 19 C 0.001 3.999 20 N -0.329 5.329 21 C -0.400 4.400 22 H 0.110 0.890 23 C -0.165 4.165 24 N -0.533 5.533 25 Si 0.704 3.296 26 H -0.218 1.218 27 H -0.231 1.231 28 H -0.198 1.198 29 C -0.152 4.152 30 C -0.016 4.016 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.186 0.814 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.248 0.752 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.040 0.960 48 H 0.075 0.925 49 H 0.101 0.899 50 H 0.115 0.885 51 H 0.108 0.892 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.831 10.420 -4.644 11.754 hybrid contribution -0.606 0.064 -1.165 1.315 sum 2.225 10.484 -5.809 12.190 Atomic orbital electron populations 1.19969 0.88076 1.02306 1.01771 1.20814 0.96392 0.88517 1.07917 1.22159 0.83124 0.99996 1.14620 1.45428 1.06314 1.07551 1.55142 1.23351 0.94980 0.81119 1.03980 1.70067 0.99764 1.29860 1.19992 1.20139 0.84817 0.94716 1.06137 1.21392 0.94267 0.95820 1.01713 0.88644 1.20054 0.87208 0.81562 0.80621 1.90641 1.46814 1.69727 1.36889 1.45927 1.22093 1.20155 1.45717 1.21264 0.85549 0.91083 1.00936 1.20733 0.88272 0.89537 0.95770 0.94740 1.21940 0.97505 0.96330 1.01047 1.21365 0.97763 0.96140 0.99309 1.22002 0.96723 0.97627 1.01147 1.21355 0.96071 0.86371 0.96116 1.44389 1.25739 1.10107 1.52631 1.18916 0.86521 1.27421 1.07102 0.89033 1.25303 0.95914 0.98567 0.96679 1.69756 1.05931 1.48483 1.29148 0.87126 0.77325 0.78876 0.86289 1.21765 1.23052 1.19823 1.21701 0.97507 0.94683 1.01271 1.21994 0.82409 0.94375 1.02842 0.91824 0.91240 0.91795 0.81366 0.87449 0.87703 0.75183 0.91125 0.92513 0.91620 0.92653 0.92810 0.93122 0.93149 0.91810 0.91002 0.95969 0.92474 0.89936 0.88456 0.89211 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.42 36.01 0.38 -0.41 16 2 C -0.01 -0.11 7.10 -82.71 -0.59 -0.70 16 3 C -0.07 -0.91 11.55 -16.76 -0.19 -1.10 16 4 N -0.46 -6.57 3.13 -113.76 -0.36 -6.93 16 5 C 0.23 4.07 7.65 -155.24 -1.19 2.88 16 6 N -0.48 -9.47 11.24 -6.88 -0.08 -9.55 16 7 C -0.02 -0.34 5.47 -27.50 -0.15 -0.49 16 8 C -0.11 -1.60 2.55 -91.49 -0.23 -1.84 16 9 H 0.10 1.21 8.12 -51.93 -0.42 0.79 16 10 C 0.52 9.04 7.13 -10.99 -0.08 8.96 16 11 O -0.56 -11.12 15.83 5.56 0.09 -11.03 16 12 N -0.69 -12.16 3.78 -60.30 -0.23 -12.39 16 13 C 0.14 2.37 4.43 -4.04 -0.02 2.35 16 14 C 0.16 2.85 3.00 -67.60 -0.20 2.65 16 15 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 16 C -0.13 -1.94 5.37 -26.61 -0.14 -2.09 16 17 C -0.11 -1.58 5.88 -26.69 -0.16 -1.73 16 18 C -0.14 -2.28 6.08 -26.63 -0.16 -2.44 16 19 C 0.13 2.56 4.20 -3.72 -0.02 2.54 16 20 N -0.60 -12.68 2.71 -164.79 -0.45 -13.13 16 21 C -0.27 -6.59 7.45 -15.06 -0.11 -6.70 16 22 H 0.09 2.44 6.07 -52.49 -0.32 2.12 16 23 C 0.04 0.95 5.26 -17.43 -0.09 0.86 16 24 N -0.89 -25.25 13.97 55.49 0.78 -24.48 16 25 Si 0.87 21.04 24.34 -169.99 -4.14 16.90 16 26 H -0.29 -6.95 6.57 56.52 0.37 -6.58 16 27 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 28 H -0.27 -6.36 6.72 56.52 0.38 -5.98 16 29 C -0.11 -1.41 4.67 -26.52 -0.12 -1.54 16 30 C 0.11 1.11 6.98 -3.92 -0.03 1.09 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.11 2.10 7.95 -51.93 -0.41 1.69 16 36 H 0.10 2.15 8.11 -51.93 -0.42 1.72 16 37 H 0.41 7.47 7.17 -40.82 -0.29 7.17 16 38 H 0.07 1.41 7.38 -51.93 -0.38 1.03 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 46 H 0.07 1.63 4.75 -51.93 -0.25 1.38 16 47 H 0.02 0.45 7.02 -51.93 -0.36 0.09 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 49 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 50 H 0.10 1.11 7.79 -51.92 -0.40 0.71 16 51 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -31.38 395.29 -10.33 -41.70 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -8.79 Total: 10.65 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -3.11 Total: 2.30 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -0.33 Total: -66.48 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.14 Total: 16.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.38 -10.33 -41.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024510380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.645 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds