Wall clock time and date at job start Wed Apr 1 2020 04:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34852 * 125.96722 * 2 1 4 4 N 1.36312 * 106.69048 * 180.02562 * 3 2 1 5 5 C 1.35424 * 107.39672 * 0.05536 * 4 3 2 6 6 N 1.30087 * 108.63292 * 359.92945 * 5 4 3 7 7 C 1.51051 * 123.97981 * 179.89399 * 5 4 3 8 8 C 1.53403 * 108.21108 * 344.05690 * 7 5 4 9 9 H 1.09002 * 109.54674 * 288.87128 * 8 7 5 10 10 C 1.50689 * 109.50980 * 168.74894 * 8 7 5 11 11 O 1.21279 * 120.00222 * 240.23596 * 10 8 7 12 12 N 1.34782 * 120.00224 * 60.23286 * 10 8 7 13 13 C 1.46501 * 120.00069 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.46749 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.70376 * 59.53240 * 14 13 12 16 16 C 1.53194 * 109.58480 * 179.88490 * 14 13 12 17 17 C 1.53041 * 109.31239 * 174.42077 * 16 14 13 18 18 C 1.53037 * 109.52805 * 298.63839 * 17 16 14 19 19 C 1.53166 * 109.32698 * 61.37222 * 18 17 16 20 20 N 1.46920 * 109.58725 * 299.16964 * 14 13 12 21 21 C 1.36936 * 120.62934 * 6.58861 * 20 14 13 22 22 H 1.08002 * 119.99996 * 328.56018 * 21 20 14 23 23 C 1.38820 * 120.00303 * 148.56288 * 21 20 14 24 24 N 1.31610 * 120.00306 * 162.62540 * 23 21 20 25 25 Si 1.86806 * 119.99479 * 342.62544 * 23 21 20 26 26 H 1.48496 * 109.47079 * 89.93489 * 25 23 21 27 27 H 1.48501 * 109.46465 * 209.93063 * 25 23 21 28 28 H 1.48494 * 109.47288 * 329.93253 * 25 23 21 29 29 C 1.53150 * 109.23648 * 48.81790 * 8 7 5 30 30 C 1.46468 * 127.77855 * 180.08760 * 4 3 2 31 31 H 1.08995 * 109.47546 * 89.99390 * 1 2 3 32 32 H 1.09004 * 109.47359 * 209.99792 * 1 2 3 33 33 H 1.09004 * 109.46730 * 329.99783 * 1 2 3 34 34 H 1.07995 * 126.65478 * 359.97438 * 3 2 1 35 35 H 1.08996 * 109.71314 * 224.37901 * 7 5 4 36 36 H 1.09000 * 109.71261 * 103.73488 * 7 5 4 37 37 H 0.97001 * 119.99851 * 0.02562 * 12 10 8 38 38 H 1.08997 * 109.47066 * 59.99912 * 13 12 10 39 39 H 1.08999 * 109.46888 * 299.99741 * 13 12 10 40 40 H 1.09002 * 109.49819 * 54.46996 * 16 14 13 41 41 H 1.09003 * 109.49655 * 294.37584 * 16 14 13 42 42 H 1.08998 * 109.46098 * 58.65662 * 17 16 14 43 43 H 1.09006 * 109.45514 * 178.63082 * 17 16 14 44 44 H 1.08997 * 109.49756 * 181.31243 * 18 17 16 45 45 H 1.09007 * 109.49802 * 301.41168 * 18 17 16 46 46 H 1.08996 * 109.59517 * 185.56740 * 19 18 17 47 47 H 1.08998 * 109.70674 * 65.20992 * 19 18 17 48 48 H 0.97004 * 120.00340 * 179.97438 * 24 23 21 49 49 H 1.08993 * 109.47158 * 50.52726 * 29 8 7 50 50 H 1.09009 * 109.46487 * 170.51160 * 29 8 7 51 51 H 1.09001 * 109.58469 * 43.04913 * 30 4 3 52 52 H 1.09003 * 109.58252 * 282.64120 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0914 0.0000 4 7 3.5857 0.6414 -0.0006 5 6 3.5413 -0.7121 -0.0022 6 7 2.2956 -1.0871 -0.0010 7 6 4.7655 -1.5969 -0.0056 8 6 5.9740 -0.7417 -0.4071 9 1 5.9058 -0.4878 -1.4649 10 6 7.2431 -1.5144 -0.1557 11 8 8.0739 -1.0819 0.6148 12 7 7.4549 -2.6862 -0.7870 13 6 8.6885 -3.4377 -0.5422 14 6 8.6786 -4.7199 -1.3769 15 1 8.6043 -4.4690 -2.4350 16 6 9.9689 -5.5065 -1.1250 17 6 9.8923 -6.8507 -1.8525 18 6 8.7166 -7.6628 -1.3046 19 6 7.4123 -6.9009 -1.5585 20 7 7.5332 -5.5530 -0.9864 21 6 6.5961 -5.0822 -0.1058 22 1 6.8849 -4.3895 0.6708 23 6 5.2750 -5.4954 -0.2112 24 7 4.4519 -5.3335 0.8029 25 14 4.6657 -6.2813 -1.7926 26 1 4.8614 -7.7516 -1.7221 27 1 3.2220 -5.9820 -1.9696 28 1 5.4292 -5.7349 -2.9431 29 6 5.9831 0.5423 0.4275 30 6 4.8149 1.4380 0.0010 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.9765 2.1221 -0.0004 35 1 4.6325 -2.4058 -0.7240 36 1 4.9226 -2.0110 0.9904 37 1 6.7906 -3.0320 -1.4035 38 1 8.7547 -3.6927 0.5155 39 1 9.5471 -2.8281 -0.8234 40 1 10.0874 -5.6781 -0.0551 41 1 10.8204 -4.9381 -1.4993 42 1 9.7490 -6.6787 -2.9193 43 1 10.8193 -7.4022 -1.6949 44 1 8.6766 -8.6294 -1.8067 45 1 8.8469 -7.8140 -0.2329 46 1 6.5837 -7.4264 -1.0838 47 1 7.2321 -6.8279 -2.6310 48 1 3.5287 -5.6219 0.7291 49 1 5.8811 0.2904 1.4830 50 1 6.9230 1.0716 0.2696 51 1 4.7132 2.2652 0.7034 52 1 4.9994 1.8270 -1.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024510380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:19 Heat of formation + Delta-G solvation = 18.238780 kcal Electronic energy + Delta-G solvation = -32293.642236 eV Core-core repulsion = 28293.305011 eV Total energy + Delta-G solvation = -4000.337225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.30288 -40.99367 -39.58689 -37.31692 -35.76919 -34.82483 -34.35834 -32.56077 -32.45129 -32.22597 -29.93662 -28.38197 -27.53936 -26.29463 -24.93338 -24.26714 -23.77333 -22.18608 -21.54744 -21.12894 -20.65689 -20.05960 -18.63027 -17.80461 -17.77227 -17.31174 -16.98818 -16.66050 -16.51391 -15.98393 -15.29490 -15.23986 -15.14682 -15.07674 -14.80586 -14.78610 -14.68127 -14.56302 -14.25478 -13.86809 -13.69150 -13.59089 -13.36670 -13.20025 -13.12023 -12.88981 -12.77429 -12.57297 -12.51770 -12.33513 -12.17727 -12.08752 -11.94567 -11.67466 -11.55528 -11.21976 -11.18741 -10.84919 -10.70474 -10.58081 -10.45613 -9.82774 -9.09539 -8.73683 -8.02121 -5.38332 1.09516 1.32737 1.43520 1.52469 1.65785 1.88634 2.11856 2.37417 2.49519 3.12858 3.27144 3.37472 3.53115 3.59162 3.64089 3.94232 4.06055 4.09005 4.10845 4.16582 4.20977 4.28891 4.34856 4.35748 4.45012 4.47782 4.53619 4.55090 4.65123 4.68100 4.78914 4.83209 4.89644 4.89823 4.92301 4.97347 5.05538 5.07939 5.10969 5.17378 5.18045 5.26533 5.32302 5.33852 5.40265 5.61091 5.67785 5.92227 5.99925 6.27802 6.31226 6.69834 7.01475 7.24721 7.33281 7.73773 8.15071 9.14532 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.003848 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.432803 B = 7275.102384 C = 9021.709456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.046 4.046 3 C -0.038 4.038 4 N -0.452 5.452 5 C 0.196 3.804 6 N -0.534 5.534 7 C -0.002 4.002 8 C -0.098 4.098 9 H 0.123 0.877 10 C 0.518 3.482 11 O -0.585 6.585 12 N -0.693 5.693 13 C 0.139 3.861 14 C 0.161 3.839 15 H 0.053 0.947 16 C -0.124 4.124 17 C -0.103 4.103 18 C -0.131 4.131 19 C 0.119 3.881 20 N -0.616 5.616 21 C -0.229 4.229 22 H 0.061 0.939 23 C -0.012 4.012 24 N -0.940 5.940 25 Si 0.924 3.076 26 H -0.287 1.287 27 H -0.328 1.328 28 H -0.254 1.254 29 C -0.108 4.108 30 C 0.106 3.894 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.219 0.781 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.408 0.592 38 H 0.037 0.963 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.042 0.958 47 H 0.031 0.969 48 H 0.254 0.746 49 H 0.058 0.942 50 H 0.116 0.884 51 H 0.124 0.876 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.530 13.277 -7.758 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.175 4.175 3 C -0.172 4.172 4 N -0.135 5.135 5 C -0.066 4.066 6 N -0.254 5.254 7 C -0.042 4.042 8 C -0.120 4.120 9 H 0.141 0.859 10 C 0.305 3.695 11 O -0.467 6.467 12 N -0.341 5.341 13 C 0.015 3.985 14 C 0.056 3.944 15 H 0.071 0.929 16 C -0.163 4.163 17 C -0.141 4.141 18 C -0.170 4.170 19 C -0.005 4.005 20 N -0.342 5.342 21 C -0.359 4.359 22 H 0.079 0.921 23 C -0.209 4.209 24 N -0.585 5.585 25 Si 0.755 3.245 26 H -0.215 1.215 27 H -0.258 1.258 28 H -0.178 1.178 29 C -0.146 4.146 30 C -0.014 4.014 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.235 0.765 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.244 0.756 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.049 0.951 48 H 0.063 0.937 49 H 0.077 0.923 50 H 0.134 0.866 51 H 0.142 0.858 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.859 12.860 -7.179 15.509 hybrid contribution -1.136 -0.671 -0.328 1.360 sum 3.723 12.189 -7.507 14.791 Atomic orbital electron populations 1.20037 0.86173 1.02940 1.02533 1.21489 0.98014 0.88490 1.09508 1.22873 0.82063 1.01341 1.10913 1.45645 1.07966 1.06428 1.53484 1.23013 0.94173 0.82867 1.06596 1.69964 1.01403 1.32805 1.21227 1.19729 0.87082 0.94754 1.02625 1.21372 0.90957 0.95898 1.03767 0.85878 1.20524 0.87756 0.81475 0.79794 1.90617 1.47975 1.70380 1.37726 1.45991 1.22152 1.20349 1.45630 1.21266 0.86356 0.91827 0.99085 1.20973 0.87957 0.89122 0.96332 0.92946 1.21908 0.96947 0.96962 1.00516 1.21365 0.97697 0.95338 0.99655 1.21927 0.95664 0.98676 1.00714 1.21393 0.97268 0.85916 0.95956 1.44542 1.26014 1.11381 1.52288 1.18655 0.86737 1.24627 1.05863 0.92105 1.25706 0.96384 1.00253 0.98531 1.69900 1.05667 1.51819 1.31117 0.86296 0.75424 0.78325 0.84422 1.21483 1.25818 1.17791 1.21674 0.99647 0.93904 0.99389 1.22334 0.79618 0.93789 1.05694 0.90955 0.93209 0.88519 0.76470 0.90505 0.92174 0.75573 0.94433 0.90054 0.93160 0.89330 0.91461 0.90399 0.90861 0.93353 0.93995 0.95094 0.93710 0.92317 0.86614 0.85830 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.43 10.42 71.24 0.74 -0.69 16 2 C -0.05 -1.48 7.10 41.40 0.29 -1.18 16 3 C -0.04 -0.94 11.55 83.22 0.96 0.03 16 4 N -0.45 -12.09 3.13 -513.82 -1.61 -13.70 16 5 C 0.20 7.25 7.65 138.24 1.06 8.31 16 6 N -0.53 -22.23 11.24 -175.68 -1.98 -24.21 16 7 C 0.00 -0.09 5.47 30.09 0.16 0.08 16 8 C -0.10 -2.89 2.55 -11.36 -0.03 -2.92 16 9 H 0.12 2.95 8.12 -2.39 -0.02 2.93 16 10 C 0.52 18.38 7.13 87.65 0.62 19.01 16 11 O -0.59 -23.49 15.83 -3.03 -0.05 -23.54 16 12 N -0.69 -24.97 3.78 -463.07 -1.75 -26.72 16 13 C 0.14 4.82 4.43 86.38 0.38 5.21 16 14 C 0.16 5.38 3.00 44.98 0.14 5.51 16 15 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 16 C -0.12 -3.39 5.37 30.67 0.16 -3.22 16 17 C -0.10 -2.60 5.88 30.62 0.18 -2.42 16 18 C -0.13 -4.10 6.08 30.66 0.19 -3.91 16 19 C 0.12 4.73 4.20 86.35 0.36 5.10 16 20 N -0.62 -25.90 2.71 -675.28 -1.83 -27.73 16 21 C -0.23 -11.64 7.45 84.04 0.63 -11.02 16 22 H 0.06 3.48 6.07 -2.91 -0.02 3.46 16 23 C -0.01 -0.68 5.26 84.87 0.45 -0.24 16 24 N -0.94 -57.45 13.97 21.65 0.30 -57.15 16 25 Si 0.92 45.39 24.34 68.60 1.67 47.06 16 26 H -0.29 -13.83 6.57 99.48 0.65 -13.17 16 27 H -0.33 -17.39 7.11 99.48 0.71 -16.69 16 28 H -0.25 -11.48 6.72 99.48 0.67 -10.81 16 29 C -0.11 -2.55 4.67 30.73 0.14 -2.40 16 30 C 0.11 1.84 6.98 86.47 0.60 2.44 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.22 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.08 3.33 7.95 -2.39 -0.02 3.31 16 36 H 0.06 2.78 8.11 -2.39 -0.02 2.76 16 37 H 0.41 15.23 7.17 -92.71 -0.66 14.56 16 38 H 0.04 1.55 7.38 -2.39 -0.02 1.54 16 39 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.04 1.91 4.75 -2.39 -0.01 1.90 16 47 H 0.03 1.19 7.02 -2.39 -0.02 1.17 16 48 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 49 H 0.06 1.67 8.12 -2.39 -0.02 1.65 16 50 H 0.12 2.35 7.79 -2.38 -0.02 2.33 16 51 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -76.24 395.29 1.96 -74.28 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: 0.16 Total: 34.04 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 7.05 Total: 17.67 kcal Atomic # 7 Polarization: -142.64 SS G_CDS: -6.87 Total: -149.51 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.05 Total: -23.54 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.67 Total: 47.06 kcal Total: -76.24 1.96 -74.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024510380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.515 kcal (2) G-P(sol) polarization free energy of solvation -76.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds