Wall clock time and date at job start Wed Apr 1 2020 04:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33323 * 126.10759 * 2 1 4 4 C 1.30852 * 109.68906 * 180.02562 * 3 2 1 5 5 N 1.34502 * 109.15903 * 359.72870 * 4 3 2 6 6 C 1.46502 * 126.47107 * 180.29294 * 5 4 3 7 7 C 1.36665 * 126.11066 * 180.02562 * 2 1 3 8 8 C 1.46766 * 126.83910 * 359.97438 * 7 2 1 9 9 O 1.21673 * 120.00191 * 352.99632 * 8 7 2 10 10 N 1.34778 * 119.99753 * 172.99643 * 8 7 2 11 11 C 1.46930 * 120.63137 * 304.48849 * 10 8 7 12 12 C 1.53188 * 108.77414 * 233.62838 * 11 10 8 13 13 C 1.53040 * 109.31434 * 305.36459 * 12 11 10 14 14 C 1.53039 * 109.53591 * 61.36370 * 13 12 11 15 15 C 1.46929 * 120.62993 * 124.50439 * 10 8 7 16 16 H 1.09000 * 109.58727 * 246.29975 * 15 10 8 17 17 C 1.52994 * 109.58555 * 6.59016 * 15 10 8 18 18 H 1.08999 * 109.87457 * 317.83459 * 17 15 10 19 19 C 1.54324 * 109.88755 * 78.85006 * 17 15 10 20 20 C 1.55155 * 102.94163 * 141.60581 * 19 17 15 21 21 C 1.54908 * 101.58685 * 324.50350 * 20 19 17 22 22 N 1.47182 * 109.79466 * 196.63809 * 17 15 10 23 23 C 1.36936 * 125.73734 * 61.63981 * 22 17 15 24 24 H 1.07996 * 119.99945 * 328.09275 * 23 22 17 25 25 C 1.38814 * 119.99990 * 148.09414 * 23 22 17 26 26 N 1.31621 * 120.00074 * 164.19769 * 25 23 22 27 27 Si 1.86798 * 120.00161 * 344.19291 * 25 23 22 28 28 H 1.48498 * 109.46979 * 86.89712 * 27 25 23 29 29 H 1.48493 * 109.47502 * 206.90204 * 27 25 23 30 30 H 1.48498 * 109.47017 * 326.90497 * 27 25 23 31 31 H 1.08996 * 109.47173 * 265.45823 * 1 2 3 32 32 H 1.09005 * 109.47163 * 25.46724 * 1 2 3 33 33 H 1.09002 * 109.47125 * 145.46002 * 1 2 3 34 34 H 1.07997 * 125.42315 * 180.02562 * 4 3 2 35 35 H 1.08998 * 109.46915 * 271.14551 * 6 5 4 36 36 H 1.09001 * 109.47360 * 31.14240 * 6 5 4 37 37 H 1.08994 * 109.47353 * 151.14261 * 6 5 4 38 38 H 1.08998 * 109.58376 * 353.41806 * 11 10 8 39 39 H 1.09007 * 109.58789 * 113.69712 * 11 10 8 40 40 H 1.08996 * 109.49759 * 65.31794 * 12 11 10 41 41 H 1.09007 * 109.49638 * 185.38400 * 12 11 10 42 42 H 1.08999 * 109.45828 * 181.38969 * 13 12 11 43 43 H 1.09008 * 109.45720 * 301.35984 * 13 12 11 44 44 H 1.09003 * 109.49362 * 178.68299 * 14 13 12 45 45 H 1.08995 * 109.49566 * 58.59133 * 14 13 12 46 46 H 1.09004 * 110.71375 * 23.25024 * 19 17 15 47 47 H 1.08996 * 110.72373 * 259.97606 * 19 17 15 48 48 H 1.08999 * 111.00505 * 206.42543 * 20 19 17 49 49 H 1.09002 * 111.00208 * 82.58190 * 20 19 17 50 50 H 1.08989 * 110.36623 * 155.84482 * 21 20 19 51 51 H 1.08997 * 110.36651 * 278.05805 * 21 20 19 52 52 H 0.96998 * 119.99903 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7073 -0.0006 5 7 3.6121 -0.6362 0.0051 6 6 4.8305 -1.4497 0.0125 7 6 2.3124 -1.1041 -0.0005 8 6 1.8821 -2.5072 -0.0006 9 8 0.7039 -2.7823 0.1283 10 7 2.7920 -3.4911 -0.1434 11 6 3.6971 -3.5116 -1.3007 12 6 3.5835 -4.8743 -1.9913 13 6 3.8449 -5.9830 -0.9694 14 6 2.7931 -5.9147 0.1402 15 6 2.8977 -4.5638 0.8550 16 1 3.8569 -4.4926 1.3678 17 6 1.7617 -4.4321 1.8714 18 1 1.6248 -3.3848 2.1405 19 6 0.4550 -4.9956 1.2742 20 6 -0.2030 -5.7061 2.4864 21 6 1.0362 -6.2623 3.2313 22 7 2.0722 -5.2256 3.0715 23 6 3.1429 -5.0326 3.9031 24 1 4.0748 -4.6588 3.5055 25 6 3.0303 -5.3173 5.2570 26 7 4.1124 -5.4349 5.9970 27 14 1.3431 -5.5335 6.0289 28 1 0.9090 -6.9460 5.8823 29 1 1.4095 -5.1832 7.4704 30 1 0.3693 -4.6432 5.3475 31 1 -0.3633 -0.0814 1.0244 32 1 -0.3634 0.9278 -0.4419 33 1 -0.3633 -0.8465 -0.5827 34 1 4.3970 1.3745 -0.0003 35 1 5.1476 -1.6385 -1.0131 36 1 5.6193 -0.9178 0.5445 37 1 4.6313 -2.3979 0.5116 38 1 3.4152 -2.7234 -1.9989 39 1 4.7223 -3.3536 -0.9658 40 1 2.5819 -4.9899 -2.4054 41 1 4.3186 -4.9378 -2.7938 42 1 3.7891 -6.9529 -1.4636 43 1 4.8372 -5.8521 -0.5374 44 1 2.9659 -6.7190 0.8552 45 1 1.7990 -6.0206 -0.2940 46 1 0.6709 -5.7096 0.4793 47 1 -0.1807 -4.1895 0.9079 48 1 -0.8566 -6.5142 2.1580 49 1 -0.7462 -4.9948 3.1086 50 1 0.8088 -6.4119 4.2866 51 1 1.3629 -7.1981 2.7780 52 1 4.0338 -5.6342 6.9430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025240836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:47 Heat of formation + Delta-G solvation = 95.748102 kcal Electronic energy + Delta-G solvation = -33814.665299 eV Core-core repulsion = 29817.689131 eV Total energy + Delta-G solvation = -3996.976169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.29161 -40.26860 -37.71525 -36.99712 -34.60900 -32.69480 -32.58569 -31.63464 -30.90390 -29.92981 -28.74965 -27.35605 -26.13635 -24.85514 -24.33852 -23.28965 -22.41139 -21.26105 -20.56182 -20.24111 -19.57562 -17.96070 -17.45699 -16.70320 -16.30963 -16.08414 -15.89859 -15.42920 -15.20699 -14.83563 -14.48233 -14.20025 -14.05972 -13.78693 -13.57801 -13.44827 -13.18185 -12.90969 -12.73772 -12.61517 -12.34790 -12.29865 -12.26028 -12.04810 -11.95062 -11.42823 -11.38729 -11.22185 -11.05154 -10.90092 -10.66937 -10.57402 -10.33897 -10.17185 -10.01477 -9.81061 -9.69630 -9.61160 -9.37473 -9.26861 -8.54209 -8.45163 -8.07928 -6.90370 -5.99235 -3.39843 1.25427 2.58447 2.79558 3.15547 3.23541 3.31521 3.47097 3.53382 4.44354 4.51963 4.53930 4.65052 4.76712 4.88139 4.92957 4.98234 5.02772 5.12682 5.23225 5.25358 5.29667 5.34586 5.42071 5.46208 5.57773 5.65304 5.70346 5.75448 5.85481 5.86601 5.90074 5.92069 6.01573 6.04683 6.14561 6.18110 6.18367 6.25753 6.37783 6.42272 6.50054 6.59831 6.62000 6.70132 6.83529 6.93846 7.02853 7.03692 7.16584 7.60857 7.84131 7.93506 8.19039 8.31829 8.82289 9.65468 10.22675 11.16937 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.004733 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.322041 B = 5914.309270 C = 6540.959047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.085 3.915 3 N -0.503 5.503 4 C 0.206 3.794 5 N -0.435 5.435 6 C 0.056 3.944 7 C -0.096 4.096 8 C 0.627 3.373 9 O -0.476 6.476 10 N -0.668 5.668 11 C 0.120 3.880 12 C -0.132 4.132 13 C -0.117 4.117 14 C -0.130 4.130 15 C 0.153 3.847 16 H 0.077 0.923 17 C 0.160 3.840 18 H 0.039 0.961 19 C -0.136 4.136 20 C -0.140 4.140 21 C 0.116 3.884 22 N -0.599 5.599 23 C -0.244 4.244 24 H 0.083 0.917 25 C 0.029 3.971 26 N -0.910 5.910 27 Si 0.896 3.104 28 H -0.285 1.285 29 H -0.306 1.306 30 H -0.272 1.272 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.209 0.791 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.041 0.959 51 H 0.030 0.970 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 5.397 -17.803 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.050 4.050 3 N -0.222 5.222 4 C -0.076 4.076 5 N -0.118 5.118 6 C -0.086 4.086 7 C -0.212 4.212 8 C 0.417 3.583 9 O -0.347 6.347 10 N -0.408 5.408 11 C -0.003 4.003 12 C -0.170 4.170 13 C -0.155 4.155 14 C -0.168 4.168 15 C 0.050 3.950 16 H 0.095 0.905 17 C 0.053 3.947 18 H 0.057 0.943 19 C -0.173 4.173 20 C -0.178 4.178 21 C -0.009 4.009 22 N -0.325 5.325 23 C -0.371 4.371 24 H 0.101 0.899 25 C -0.170 4.170 26 N -0.553 5.553 27 Si 0.729 3.271 28 H -0.214 1.214 29 H -0.235 1.235 30 H -0.198 1.198 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.225 0.775 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.115 0.885 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.058 0.942 51 H 0.048 0.952 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.148 5.916 -17.470 18.445 hybrid contribution -0.044 -0.895 0.712 1.145 sum -0.192 5.021 -16.758 17.495 Atomic orbital electron populations 1.20193 0.86734 1.02748 1.03154 1.21049 0.96698 0.86966 1.00252 1.70084 1.00414 1.30401 1.21295 1.25034 0.97202 0.82052 1.03283 1.45314 1.06549 1.07594 1.52300 1.22762 0.84474 0.97715 1.03662 1.21438 0.84052 0.96130 1.19579 1.16714 0.85021 0.82365 0.74172 1.90660 1.17783 1.83064 1.43214 1.47567 1.39610 1.27430 1.26195 1.21805 0.93837 0.97658 0.87007 1.21900 1.02112 0.95033 0.97947 1.21507 0.99658 0.97831 0.96507 1.22141 0.99070 0.98074 0.97543 1.21714 1.01315 0.84701 0.87291 0.90501 1.21097 0.91362 0.95305 0.86952 0.94306 1.23184 0.96748 1.00666 0.96721 1.22823 0.97462 0.99583 0.97977 1.21958 0.88801 0.92221 0.97879 1.44713 1.28288 1.31954 1.27556 1.18490 0.88923 1.42250 0.87472 0.89904 1.25260 0.96737 0.99133 0.95902 1.69768 1.27380 1.51129 1.07011 0.86700 0.85881 0.77550 0.76951 1.21357 1.23469 1.19805 0.90657 0.91403 0.90021 0.77454 0.89896 0.89384 0.87597 0.91412 0.91643 0.91671 0.91397 0.92226 0.92036 0.90376 0.90718 0.90814 0.88533 0.91977 0.92043 0.94171 0.95208 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 9.69 36.00 0.35 -0.61 16 2 C 0.09 1.30 7.14 -82.51 -0.59 0.71 16 3 N -0.50 -7.41 11.20 -10.64 -0.12 -7.53 16 4 C 0.21 2.41 12.52 -90.57 -1.13 1.27 16 5 N -0.43 -5.28 3.17 -121.98 -0.39 -5.67 16 6 C 0.06 0.50 8.69 59.85 0.52 1.02 16 7 C -0.10 -1.44 6.58 -82.15 -0.54 -1.98 16 8 C 0.63 9.94 5.33 -12.81 -0.07 9.88 16 9 O -0.48 -8.36 10.68 5.21 0.06 -8.30 16 10 N -0.67 -9.41 1.66 -166.72 -0.28 -9.69 16 11 C 0.12 1.25 4.01 -3.71 -0.01 1.23 16 12 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16 13 C -0.12 -1.36 5.88 -26.69 -0.16 -1.51 16 14 C -0.13 -1.93 4.83 -26.61 -0.13 -2.06 16 15 C 0.15 2.57 2.71 -67.60 -0.18 2.38 16 16 H 0.08 1.45 7.04 -51.93 -0.37 1.09 16 17 C 0.16 3.24 2.37 -66.87 -0.16 3.08 16 18 H 0.04 0.90 6.53 -51.93 -0.34 0.56 16 19 C -0.14 -2.46 5.29 -24.90 -0.13 -2.60 16 20 C -0.14 -2.65 7.09 -24.58 -0.17 -2.82 16 21 C 0.12 2.56 6.23 -2.53 -0.02 2.54 16 22 N -0.60 -14.24 2.75 -162.46 -0.45 -14.69 16 23 C -0.24 -6.71 10.11 -15.06 -0.15 -6.86 16 24 H 0.08 2.40 7.35 -52.49 -0.39 2.01 16 25 C 0.03 0.85 5.47 -17.43 -0.10 0.75 16 26 N -0.91 -27.67 13.97 55.49 0.78 -26.90 16 27 Si 0.90 23.26 24.77 -169.99 -4.21 19.05 16 28 H -0.28 -7.16 6.60 56.52 0.37 -6.79 16 29 H -0.31 -8.04 7.11 56.52 0.40 -7.64 16 30 H -0.27 -7.08 7.10 56.52 0.40 -6.67 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.11 6.91 -51.93 -0.36 0.75 16 34 H 0.21 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.08 0.54 6.61 -51.93 -0.34 0.19 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.11 1.20 5.40 -51.93 -0.28 0.92 16 38 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 39 H 0.07 0.58 5.16 -51.93 -0.27 0.31 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.07 1.12 5.33 -51.93 -0.28 0.84 16 46 H 0.07 1.23 4.63 -51.93 -0.24 0.99 16 47 H 0.10 1.79 5.42 -51.93 -0.28 1.51 16 48 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.04 0.98 2.46 -51.93 -0.13 0.85 16 51 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 52 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -33.28 375.55 -9.69 -42.97 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.91 Total: 2.13 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -2.84 Total: 2.97 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -0.46 Total: -64.47 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.06 Total: -8.30 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.21 Total: 19.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.28 -9.69 -42.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025240836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.718 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds