Wall clock time and date at job start Wed Apr 1 2020 04:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33323 * 126.10759 * 2 1 4 4 C 1.30852 * 109.68906 * 180.02562 * 3 2 1 5 5 N 1.34502 * 109.15903 * 359.72870 * 4 3 2 6 6 C 1.46502 * 126.47107 * 180.29294 * 5 4 3 7 7 C 1.36665 * 126.11066 * 180.02562 * 2 1 3 8 8 C 1.46766 * 126.83910 * 359.97438 * 7 2 1 9 9 O 1.21673 * 120.00191 * 352.99632 * 8 7 2 10 10 N 1.34778 * 119.99753 * 172.99643 * 8 7 2 11 11 C 1.46930 * 120.63137 * 304.48849 * 10 8 7 12 12 C 1.53188 * 108.77414 * 233.62838 * 11 10 8 13 13 C 1.53040 * 109.31434 * 305.36459 * 12 11 10 14 14 C 1.53039 * 109.53591 * 61.36370 * 13 12 11 15 15 C 1.46929 * 120.62993 * 124.50439 * 10 8 7 16 16 H 1.09000 * 109.58727 * 246.29975 * 15 10 8 17 17 C 1.52994 * 109.58555 * 6.59016 * 15 10 8 18 18 H 1.08999 * 109.87457 * 317.83459 * 17 15 10 19 19 C 1.54324 * 109.88755 * 78.85006 * 17 15 10 20 20 C 1.55155 * 102.94163 * 141.60581 * 19 17 15 21 21 C 1.54908 * 101.58685 * 324.50350 * 20 19 17 22 22 N 1.47182 * 109.79466 * 196.63809 * 17 15 10 23 23 C 1.36936 * 125.73734 * 61.63981 * 22 17 15 24 24 H 1.07996 * 119.99945 * 328.09275 * 23 22 17 25 25 C 1.38814 * 119.99990 * 148.09414 * 23 22 17 26 26 N 1.31621 * 120.00074 * 164.19769 * 25 23 22 27 27 Si 1.86798 * 120.00161 * 344.19291 * 25 23 22 28 28 H 1.48498 * 109.46979 * 86.89712 * 27 25 23 29 29 H 1.48493 * 109.47502 * 206.90204 * 27 25 23 30 30 H 1.48498 * 109.47017 * 326.90497 * 27 25 23 31 31 H 1.08996 * 109.47173 * 265.45823 * 1 2 3 32 32 H 1.09005 * 109.47163 * 25.46724 * 1 2 3 33 33 H 1.09002 * 109.47125 * 145.46002 * 1 2 3 34 34 H 1.07997 * 125.42315 * 180.02562 * 4 3 2 35 35 H 1.08998 * 109.46915 * 271.14551 * 6 5 4 36 36 H 1.09001 * 109.47360 * 31.14240 * 6 5 4 37 37 H 1.08994 * 109.47353 * 151.14261 * 6 5 4 38 38 H 1.08998 * 109.58376 * 353.41806 * 11 10 8 39 39 H 1.09007 * 109.58789 * 113.69712 * 11 10 8 40 40 H 1.08996 * 109.49759 * 65.31794 * 12 11 10 41 41 H 1.09007 * 109.49638 * 185.38400 * 12 11 10 42 42 H 1.08999 * 109.45828 * 181.38969 * 13 12 11 43 43 H 1.09008 * 109.45720 * 301.35984 * 13 12 11 44 44 H 1.09003 * 109.49362 * 178.68299 * 14 13 12 45 45 H 1.08995 * 109.49566 * 58.59133 * 14 13 12 46 46 H 1.09004 * 110.71375 * 23.25024 * 19 17 15 47 47 H 1.08996 * 110.72373 * 259.97606 * 19 17 15 48 48 H 1.08999 * 111.00505 * 206.42543 * 20 19 17 49 49 H 1.09002 * 111.00208 * 82.58190 * 20 19 17 50 50 H 1.08989 * 110.36623 * 155.84482 * 21 20 19 51 51 H 1.08997 * 110.36651 * 278.05805 * 21 20 19 52 52 H 0.96998 * 119.99903 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7073 -0.0006 5 7 3.6121 -0.6362 0.0051 6 6 4.8305 -1.4497 0.0125 7 6 2.3124 -1.1041 -0.0005 8 6 1.8821 -2.5072 -0.0006 9 8 0.7039 -2.7823 0.1283 10 7 2.7920 -3.4911 -0.1434 11 6 3.6971 -3.5116 -1.3007 12 6 3.5835 -4.8743 -1.9913 13 6 3.8449 -5.9830 -0.9694 14 6 2.7931 -5.9147 0.1402 15 6 2.8977 -4.5638 0.8550 16 1 3.8569 -4.4926 1.3678 17 6 1.7617 -4.4321 1.8714 18 1 1.6248 -3.3848 2.1405 19 6 0.4550 -4.9956 1.2742 20 6 -0.2030 -5.7061 2.4864 21 6 1.0362 -6.2623 3.2313 22 7 2.0722 -5.2256 3.0715 23 6 3.1429 -5.0326 3.9031 24 1 4.0748 -4.6588 3.5055 25 6 3.0303 -5.3173 5.2570 26 7 4.1124 -5.4349 5.9970 27 14 1.3431 -5.5335 6.0289 28 1 0.9090 -6.9460 5.8823 29 1 1.4095 -5.1832 7.4704 30 1 0.3693 -4.6432 5.3475 31 1 -0.3633 -0.0814 1.0244 32 1 -0.3634 0.9278 -0.4419 33 1 -0.3633 -0.8465 -0.5827 34 1 4.3970 1.3745 -0.0003 35 1 5.1476 -1.6385 -1.0131 36 1 5.6193 -0.9178 0.5445 37 1 4.6313 -2.3979 0.5116 38 1 3.4152 -2.7234 -1.9989 39 1 4.7223 -3.3536 -0.9658 40 1 2.5819 -4.9899 -2.4054 41 1 4.3186 -4.9378 -2.7938 42 1 3.7891 -6.9529 -1.4636 43 1 4.8372 -5.8521 -0.5374 44 1 2.9659 -6.7190 0.8552 45 1 1.7990 -6.0206 -0.2940 46 1 0.6709 -5.7096 0.4793 47 1 -0.1807 -4.1895 0.9079 48 1 -0.8566 -6.5142 2.1580 49 1 -0.7462 -4.9948 3.1086 50 1 0.8088 -6.4119 4.2866 51 1 1.3629 -7.1981 2.7780 52 1 4.0338 -5.6342 6.9430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025240836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:46 Heat of formation + Delta-G solvation = 76.524551 kcal Electronic energy + Delta-G solvation = -33815.498895 eV Core-core repulsion = 29817.689131 eV Total energy + Delta-G solvation = -3997.809764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.30930 -41.52860 -39.19963 -38.22889 -35.58883 -34.68511 -33.70623 -32.93220 -31.98693 -31.84113 -29.75432 -28.71374 -27.08449 -26.38518 -25.88415 -24.50415 -23.58262 -22.70556 -21.72494 -21.48457 -20.90536 -19.27940 -18.91745 -18.11358 -17.95351 -17.38440 -17.05744 -16.65818 -16.38807 -16.22386 -15.55207 -15.37001 -15.23738 -15.19338 -14.91925 -14.78639 -14.47879 -14.35651 -14.12979 -13.81149 -13.76788 -13.41878 -13.34471 -13.22063 -13.17467 -13.05327 -12.90870 -12.82479 -12.51716 -12.39164 -12.10558 -11.81792 -11.67064 -11.59654 -11.41961 -11.38442 -11.17594 -10.96859 -10.70277 -10.61006 -10.57497 -9.55365 -9.19767 -8.90158 -8.23171 -5.59099 0.16208 1.21761 1.33515 1.44023 1.61035 1.81150 2.02132 2.12488 2.35532 3.03634 3.27811 3.50739 3.63824 3.80749 3.84253 3.86760 3.90600 4.00280 4.09262 4.14047 4.16745 4.28003 4.29196 4.32017 4.35209 4.40935 4.54426 4.59343 4.67664 4.70508 4.71483 4.78297 4.87367 4.89146 4.96094 4.97523 5.01996 5.08348 5.13893 5.15856 5.18572 5.22566 5.27556 5.37695 5.49622 5.55074 5.56278 5.77387 5.91071 6.10543 6.15284 6.48927 6.74902 6.89072 7.01757 7.49422 8.14391 8.96792 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.004733 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.322041 B = 5914.309270 C = 6540.959047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.067 3.933 3 N -0.534 5.534 4 C 0.221 3.779 5 N -0.434 5.434 6 C 0.051 3.949 7 C -0.120 4.120 8 C 0.623 3.377 9 O -0.503 6.503 10 N -0.663 5.663 11 C 0.114 3.886 12 C -0.124 4.124 13 C -0.112 4.112 14 C -0.124 4.124 15 C 0.167 3.833 16 H 0.050 0.950 17 C 0.160 3.840 18 H 0.003 0.997 19 C -0.122 4.122 20 C -0.133 4.133 21 C 0.108 3.892 22 N -0.613 5.613 23 C -0.225 4.225 24 H 0.058 0.942 25 C -0.025 4.025 26 N -0.952 5.952 27 Si 0.951 3.049 28 H -0.270 1.270 29 H -0.312 1.312 30 H -0.277 1.277 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.254 0.746 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.099 0.901 49 H 0.048 0.952 50 H 0.023 0.977 51 H 0.043 0.957 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.832 5.350 -20.543 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.068 4.068 3 N -0.254 5.254 4 C -0.061 4.061 5 N -0.115 5.115 6 C -0.089 4.089 7 C -0.236 4.236 8 C 0.414 3.586 9 O -0.377 6.377 10 N -0.403 5.403 11 C -0.007 4.007 12 C -0.162 4.162 13 C -0.150 4.150 14 C -0.162 4.162 15 C 0.063 3.937 16 H 0.068 0.932 17 C 0.054 3.946 18 H 0.021 0.979 19 C -0.159 4.159 20 C -0.171 4.171 21 C -0.016 4.016 22 N -0.340 5.340 23 C -0.355 4.355 24 H 0.075 0.925 25 C -0.221 4.221 26 N -0.598 5.598 27 Si 0.783 3.217 28 H -0.198 1.198 29 H -0.241 1.241 30 H -0.203 1.203 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.270 0.730 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.119 0.881 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.118 0.882 49 H 0.067 0.933 50 H 0.040 0.960 51 H 0.061 0.939 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.200 5.854 -20.264 21.093 hybrid contribution -0.059 -0.791 1.493 1.691 sum 0.142 5.063 -18.771 19.442 Atomic orbital electron populations 1.20145 0.86448 1.03257 1.02515 1.21344 0.97429 0.87532 1.00482 1.70080 1.01784 1.30603 1.22894 1.25934 0.97526 0.82276 1.00343 1.45496 1.06379 1.08082 1.51589 1.22976 0.83692 0.96518 1.05750 1.21339 0.85551 0.95544 1.21183 1.16947 0.84948 0.83089 0.73587 1.90619 1.18877 1.83562 1.44610 1.47476 1.40028 1.26258 1.26540 1.22109 0.94058 0.98706 0.85814 1.21876 1.02852 0.93502 0.97992 1.21473 0.98202 0.99562 0.95759 1.22045 1.00539 0.95629 0.97956 1.21231 0.98202 0.86892 0.87355 0.93216 1.21165 0.94046 0.92891 0.86542 0.97900 1.23111 0.95221 1.00824 0.96776 1.22820 0.96468 1.00372 0.97449 1.22101 0.89657 0.92492 0.97360 1.44806 1.27734 1.33275 1.28145 1.18420 0.89230 1.39952 0.87850 0.92476 1.25804 0.99372 1.00353 0.96539 1.69872 1.28999 1.53729 1.07173 0.85800 0.82251 0.78101 0.75543 1.19789 1.24103 1.20275 0.91676 0.90071 0.90387 0.72993 0.86700 0.86956 0.90195 0.90253 0.89682 0.92217 0.88148 0.90616 0.92114 0.92726 0.90438 0.88891 0.88671 0.88233 0.93286 0.95983 0.93928 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.83 9.69 71.23 0.69 -1.14 16 2 C 0.07 2.06 7.14 41.96 0.30 2.36 16 3 N -0.53 -15.18 11.20 -187.59 -2.10 -17.29 16 4 C 0.22 4.64 12.52 180.33 2.26 6.90 16 5 N -0.43 -9.78 3.17 -539.82 -1.71 -11.49 16 6 C 0.05 0.79 8.69 127.77 1.11 1.90 16 7 C -0.12 -3.56 6.58 40.01 0.26 -3.29 16 8 C 0.62 19.78 5.33 86.47 0.46 20.24 16 9 O -0.50 -17.93 10.68 -4.26 -0.05 -17.98 16 10 N -0.66 -18.22 1.66 -799.60 -1.33 -19.55 16 11 C 0.11 2.09 4.01 86.36 0.35 2.43 16 12 C -0.12 -2.03 6.08 30.67 0.19 -1.84 16 13 C -0.11 -2.32 5.88 30.62 0.18 -2.14 16 14 C -0.12 -3.53 4.83 30.67 0.15 -3.39 16 15 C 0.17 5.64 2.71 44.97 0.12 5.76 16 16 H 0.05 1.95 7.04 -2.39 -0.02 1.94 16 17 C 0.16 6.58 2.37 45.31 0.11 6.69 16 18 H 0.00 0.15 6.53 -2.39 -0.02 0.14 16 19 C -0.12 -4.34 5.29 31.78 0.17 -4.17 16 20 C -0.13 -4.83 7.09 31.99 0.23 -4.60 16 21 C 0.11 4.70 6.23 86.85 0.54 5.24 16 22 N -0.61 -29.69 2.75 -667.91 -1.84 -31.53 16 23 C -0.23 -12.84 10.11 84.03 0.85 -11.99 16 24 H 0.06 3.49 7.35 -2.91 -0.02 3.47 16 25 C -0.02 -1.48 5.47 84.86 0.46 -1.02 16 26 N -0.95 -59.70 13.97 21.65 0.30 -59.40 16 27 Si 0.95 49.17 24.77 68.60 1.70 50.87 16 28 H -0.27 -13.19 6.60 99.48 0.66 -12.53 16 29 H -0.31 -16.25 7.11 99.48 0.71 -15.55 16 30 H -0.28 -14.31 7.10 99.48 0.71 -13.60 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 1.94 8.14 -2.38 -0.02 1.93 16 33 H 0.08 2.17 6.91 -2.39 -0.02 2.16 16 34 H 0.25 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.11 1.04 6.61 -2.39 -0.02 1.02 16 36 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.72 5.40 -2.39 -0.01 1.71 16 38 H 0.08 1.32 7.75 -2.39 -0.02 1.30 16 39 H 0.09 1.24 5.16 -2.38 -0.01 1.23 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.08 2.17 5.33 -2.39 -0.01 2.15 16 46 H 0.09 2.94 4.63 -2.38 -0.01 2.93 16 47 H 0.10 3.50 5.42 -2.39 -0.01 3.49 16 48 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 49 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.02 1.06 2.46 -2.39 -0.01 1.06 16 51 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -76.30 375.55 4.28 -72.01 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.89 Total: 16.40 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 8.42 Total: 17.95 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -6.68 Total: -139.26 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.05 Total: -17.98 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 1.70 Total: 50.87 kcal Total: -76.30 4.28 -72.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025240836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.538 kcal (2) G-P(sol) polarization free energy of solvation -76.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds