Wall clock time and date at job start Wed Apr 1 2020 04:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33309 * 126.11023 * 2 1 4 4 C 1.30857 * 109.68545 * 180.27906 * 3 2 1 5 5 N 1.34492 * 109.16468 * 359.76409 * 4 3 2 6 6 C 1.46497 * 126.47498 * 180.02562 * 5 4 3 7 7 C 1.36660 * 126.10219 * 179.88177 * 2 1 3 8 8 C 1.46764 * 126.85001 * 359.97438 * 7 2 1 9 9 O 1.21682 * 120.00248 * 272.27060 * 8 7 2 10 10 N 1.34778 * 119.99956 * 92.26284 * 8 7 2 11 11 C 1.46923 * 120.63116 * 2.89530 * 10 8 7 12 12 C 1.53189 * 108.77247 * 233.58275 * 11 10 8 13 13 C 1.53039 * 109.31850 * 305.36411 * 12 11 10 14 14 C 1.53042 * 109.53657 * 61.36074 * 13 12 11 15 15 C 1.46928 * 120.62777 * 182.86977 * 10 8 7 16 16 H 1.09004 * 109.58413 * 246.34081 * 15 10 8 17 17 C 1.53000 * 109.58832 * 6.62631 * 15 10 8 18 18 H 1.08999 * 109.86959 * 41.00716 * 17 15 10 19 19 C 1.54318 * 109.88382 * 279.82659 * 17 15 10 20 20 C 1.55273 * 103.01348 * 218.46829 * 19 17 15 21 21 C 1.54919 * 101.52269 * 35.36093 * 20 19 17 22 22 N 1.47024 * 109.88085 * 162.02251 * 17 15 10 23 23 C 1.36936 * 125.64601 * 298.33464 * 22 17 15 24 24 H 1.08007 * 119.99857 * 137.85961 * 23 22 17 25 25 C 1.38813 * 120.00411 * 317.86180 * 23 22 17 26 26 N 1.31615 * 120.00283 * 168.56047 * 25 23 22 27 27 Si 1.86803 * 119.99754 * 348.55553 * 25 23 22 28 28 H 1.48500 * 109.46748 * 91.33507 * 27 25 23 29 29 H 1.48500 * 109.47073 * 211.33472 * 27 25 23 30 30 H 1.48503 * 109.47008 * 331.34031 * 27 25 23 31 31 H 1.09004 * 109.47033 * 270.12201 * 1 2 3 32 32 H 1.08997 * 109.46910 * 30.11370 * 1 2 3 33 33 H 1.08999 * 109.47408 * 150.11582 * 1 2 3 34 34 H 1.08008 * 125.41731 * 179.78769 * 4 3 2 35 35 H 1.08995 * 109.47510 * 274.43553 * 6 5 4 36 36 H 1.09011 * 109.46875 * 34.43186 * 6 5 4 37 37 H 1.09002 * 109.47438 * 154.42714 * 6 5 4 38 38 H 1.08998 * 109.58470 * 353.36781 * 11 10 8 39 39 H 1.09001 * 109.58454 * 113.65561 * 11 10 8 40 40 H 1.09008 * 109.49960 * 65.31674 * 12 11 10 41 41 H 1.09006 * 109.50006 * 185.41346 * 12 11 10 42 42 H 1.08994 * 109.46482 * 181.38387 * 13 12 11 43 43 H 1.08999 * 109.45750 * 301.36115 * 13 12 11 44 44 H 1.09001 * 109.49664 * 178.68457 * 14 13 12 45 45 H 1.09010 * 109.49284 * 58.59434 * 14 13 12 46 46 H 1.09003 * 110.72230 * 336.75530 * 19 17 15 47 47 H 1.09006 * 110.72168 * 99.84848 * 19 17 15 48 48 H 1.08998 * 110.95562 * 277.34530 * 20 19 17 49 49 H 1.08992 * 111.10228 * 153.44916 * 20 19 17 50 50 H 1.09003 * 110.36204 * 204.23308 * 21 20 19 51 51 H 1.09000 * 110.36360 * 82.02249 * 21 20 19 52 52 H 0.97002 * 120.00203 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0770 0.0000 4 6 3.5478 0.7070 -0.0060 5 7 3.6121 -0.6364 -0.0049 6 6 4.8304 -1.4500 -0.0097 7 6 2.3122 -1.1042 0.0023 8 6 1.8820 -2.5073 0.0057 9 8 1.6641 -3.0743 1.0600 10 7 1.7281 -3.1678 -1.1590 11 6 2.0477 -2.5167 -2.4367 12 6 0.8323 -2.6248 -3.3628 13 6 0.4226 -4.0938 -3.4911 14 6 0.0316 -4.6381 -2.1153 15 6 1.2379 -4.5528 -1.1750 16 1 2.0274 -5.2157 -1.5292 17 6 0.8176 -4.9645 0.2373 18 1 0.2908 -4.1423 0.7216 19 6 2.0620 -5.3536 1.0629 20 6 1.5636 -6.5647 1.8970 21 6 0.6019 -7.2543 0.8971 22 7 -0.0524 -6.1481 0.1750 23 6 -1.2692 -6.2122 -0.4498 24 1 -1.5299 -7.0808 -1.0365 25 6 -2.1676 -5.1609 -0.3293 26 7 -3.2332 -5.1142 -1.1004 27 14 -1.8643 -3.8126 0.9275 28 1 -1.0891 -2.7139 0.2972 29 1 -3.1654 -3.2858 1.4120 30 1 -1.0970 -4.3663 2.0721 31 1 -0.3633 0.0022 1.0277 32 1 -0.3633 0.8889 -0.5156 33 1 -0.3634 -0.8910 -0.5120 34 1 4.3971 1.3743 -0.0107 35 1 5.1720 -1.5868 -1.0357 36 1 5.6060 -0.9462 0.5673 37 1 4.6199 -2.4222 0.4359 38 1 2.2825 -1.4666 -2.2630 39 1 2.9040 -3.0117 -2.8949 40 1 0.0045 -2.0515 -2.9452 41 1 1.0882 -2.2313 -4.3466 42 1 -0.4269 -4.1760 -4.1690 43 1 1.2591 -4.6709 -3.8854 44 1 -0.2824 -5.6775 -2.2111 45 1 -0.7887 -4.0458 -1.7094 46 1 2.8819 -5.6496 0.4084 47 1 2.3660 -4.5327 1.7124 48 1 1.0291 -6.2318 2.7867 49 1 2.3894 -7.2244 2.1631 50 1 -0.1387 -7.8490 1.4320 51 1 1.1619 -7.8815 0.2034 52 1 -3.8612 -4.3797 -1.0159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025240838.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:50 Heat of formation + Delta-G solvation = 94.893402 kcal Electronic energy + Delta-G solvation = -34610.238922 eV Core-core repulsion = 30613.225691 eV Total energy + Delta-G solvation = -3997.013231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.27474 -40.26742 -37.33041 -36.80599 -34.52644 -32.93926 -32.32195 -31.62697 -30.71054 -29.80478 -28.40738 -27.36626 -26.13564 -24.75600 -24.33662 -22.83746 -22.12786 -20.69877 -20.49784 -19.86732 -19.64554 -18.82322 -17.52152 -16.84323 -16.18188 -15.77968 -15.54043 -15.18267 -14.97562 -14.72909 -14.19361 -14.07065 -13.74153 -13.58915 -13.54198 -13.14890 -13.02049 -12.83268 -12.76898 -12.67296 -12.41910 -12.31933 -12.28286 -12.11347 -11.78900 -11.41997 -11.10139 -11.01476 -10.84263 -10.75165 -10.51957 -10.26536 -10.14114 -9.94374 -9.92078 -9.68016 -9.58769 -9.53425 -9.38591 -8.90143 -8.32836 -8.25201 -8.12884 -6.53328 -5.96332 -3.42662 1.72605 2.27901 2.90119 2.99021 3.35620 3.45055 3.54467 3.70569 4.43662 4.48126 4.56402 4.58185 4.83782 4.97294 5.05017 5.12031 5.16497 5.24626 5.27682 5.31481 5.40292 5.51546 5.65384 5.68087 5.76772 5.82157 5.86902 5.89227 5.95954 6.00077 6.03692 6.11704 6.15765 6.21151 6.32612 6.37773 6.41100 6.44299 6.58197 6.61169 6.71426 6.76289 6.87009 6.92970 7.01206 7.03683 7.19626 7.44342 7.64415 7.66289 7.95441 8.06492 8.37756 8.47291 8.94214 9.70309 10.36353 11.16969 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012050 B = 0.005582 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.999121 B = 5015.137566 C = 5380.371806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.054 3.946 3 N -0.491 5.491 4 C 0.190 3.810 5 N -0.442 5.442 6 C 0.071 3.929 7 C -0.063 4.063 8 C 0.578 3.422 9 O -0.502 6.502 10 N -0.589 5.589 11 C 0.112 3.888 12 C -0.133 4.133 13 C -0.123 4.123 14 C -0.118 4.118 15 C 0.140 3.860 16 H 0.059 0.941 17 C 0.143 3.857 18 H 0.082 0.918 19 C -0.119 4.119 20 C -0.139 4.139 21 C 0.129 3.871 22 N -0.608 5.608 23 C -0.247 4.247 24 H 0.080 0.920 25 C 0.045 3.955 26 N -0.902 5.902 27 Si 0.885 3.115 28 H -0.278 1.278 29 H -0.309 1.309 30 H -0.268 1.268 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.208 0.792 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.113 0.887 45 H 0.078 0.922 46 H 0.046 0.954 47 H 0.091 0.909 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.045 0.955 51 H 0.021 0.979 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.777 7.537 -2.421 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 N -0.210 5.210 4 C -0.092 4.092 5 N -0.126 5.126 6 C -0.072 4.072 7 C -0.180 4.180 8 C 0.364 3.636 9 O -0.378 6.378 10 N -0.322 5.322 11 C -0.011 4.011 12 C -0.171 4.171 13 C -0.161 4.161 14 C -0.156 4.156 15 C 0.037 3.963 16 H 0.076 0.924 17 C 0.038 3.962 18 H 0.099 0.901 19 C -0.156 4.156 20 C -0.177 4.177 21 C 0.004 3.996 22 N -0.335 5.335 23 C -0.375 4.375 24 H 0.097 0.903 25 C -0.156 4.156 26 N -0.543 5.543 27 Si 0.717 3.283 28 H -0.205 1.205 29 H -0.237 1.237 30 H -0.194 1.194 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.225 0.775 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.131 0.869 45 H 0.097 0.903 46 H 0.064 0.936 47 H 0.109 0.891 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.064 0.936 51 H 0.039 0.961 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.276 7.966 -1.947 18.225 hybrid contribution 0.644 0.208 0.497 0.840 sum 16.920 8.174 -1.450 18.847 Atomic orbital electron populations 1.20237 0.87182 1.03198 1.02922 1.20811 0.96330 0.86807 1.03855 1.69983 1.00331 1.30230 1.20485 1.24901 0.97146 0.81676 1.05431 1.45291 1.05872 1.07656 1.53821 1.22115 0.84687 0.96601 1.03774 1.21010 0.84429 0.95705 1.16806 1.17035 0.79183 0.82926 0.84496 1.90851 1.49653 1.65208 1.32050 1.48311 1.63966 1.14860 1.05068 1.21650 0.97661 0.97472 0.84347 1.21908 0.97813 0.98890 0.98508 1.21673 1.00481 0.94164 0.99802 1.22411 0.96500 1.05359 0.91294 1.22207 0.95770 0.78188 1.00165 0.92353 1.21961 0.91499 0.91987 0.90720 0.90135 1.22950 0.96518 0.97485 0.98670 1.22813 0.98696 0.97581 0.98643 1.21712 0.94057 0.91613 0.92189 1.44883 1.17982 1.08491 1.62163 1.18324 0.88684 1.06042 1.24464 0.90252 1.25454 0.94536 0.98822 0.96790 1.69774 1.13165 1.32562 1.38799 0.86900 0.75127 0.82305 0.83992 1.20500 1.23731 1.19377 0.90994 0.90665 0.90756 0.77516 0.90143 0.89084 0.89410 0.90759 0.91839 0.91531 0.91610 0.91866 0.93074 0.86915 0.90340 0.93571 0.89069 0.92014 0.92527 0.93625 0.96118 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.24 36.01 0.37 -0.93 16 2 C 0.05 0.91 7.14 -82.52 -0.59 0.32 16 3 N -0.49 -7.50 11.20 -10.65 -0.12 -7.62 16 4 C 0.19 2.19 12.52 -90.58 -1.13 1.05 16 5 N -0.44 -5.35 3.17 -121.97 -0.39 -5.73 16 6 C 0.07 0.56 11.06 59.85 0.66 1.22 16 7 C -0.06 -1.02 4.59 -82.14 -0.38 -1.39 16 8 C 0.58 10.60 6.35 -12.81 -0.08 10.52 16 9 O -0.50 -10.70 9.88 5.21 0.05 -10.65 16 10 N -0.59 -10.18 2.97 -166.72 -0.50 -10.68 16 11 C 0.11 1.56 6.34 -3.71 -0.02 1.54 16 12 C -0.13 -1.94 6.08 -26.61 -0.16 -2.10 16 13 C -0.12 -2.05 5.88 -26.69 -0.16 -2.20 16 14 C -0.12 -2.46 3.70 -26.61 -0.10 -2.56 16 15 C 0.14 2.73 2.75 -67.60 -0.19 2.55 16 16 H 0.06 1.09 7.67 -51.93 -0.40 0.69 16 17 C 0.14 3.17 1.32 -66.95 -0.09 3.08 16 18 H 0.08 2.00 1.23 -51.86 -0.06 1.94 16 19 C -0.12 -2.30 5.53 -24.84 -0.14 -2.43 16 20 C -0.14 -2.59 7.10 -24.51 -0.17 -2.76 16 21 C 0.13 2.70 7.23 -2.53 -0.02 2.68 16 22 N -0.61 -14.58 2.52 -162.57 -0.41 -14.99 16 23 C -0.25 -6.66 7.11 -15.06 -0.11 -6.76 16 24 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 25 C 0.05 1.26 3.55 -17.43 -0.06 1.20 16 26 N -0.90 -26.33 13.97 55.49 0.78 -25.56 16 27 Si 0.89 23.56 23.59 -169.99 -4.01 19.55 16 28 H -0.28 -7.15 6.01 56.52 0.34 -6.82 16 29 H -0.31 -8.40 7.11 56.52 0.40 -7.99 16 30 H -0.27 -7.47 6.91 56.52 0.39 -7.08 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.38 6.89 -51.93 -0.36 1.02 16 34 H 0.21 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.09 0.82 7.81 -51.93 -0.41 0.42 16 38 H 0.07 1.01 6.33 -51.93 -0.33 0.68 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.11 2.66 5.76 -51.93 -0.30 2.36 16 45 H 0.08 1.91 4.97 -51.92 -0.26 1.65 16 46 H 0.05 0.81 7.56 -51.93 -0.39 0.42 16 47 H 0.09 1.83 5.53 -52.42 -0.29 1.54 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 379.82 15.07 5.72 5.72 Total: -1.00 -32.93 379.82 -9.58 -42.51 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -8.34 Total: 4.44 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.37 Total: 3.00 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.64 Total: -64.57 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.05 Total: -10.65 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.01 Total: 19.55 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.93 -9.58 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025240838.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.406 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds