Wall clock time and date at job start Wed Apr 1 2020 04:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34673 * 126.58896 * 2 1 4 4 N 1.34123 * 108.02366 * 179.97438 * 3 2 1 5 5 C 1.30500 * 109.25555 * 0.02562 * 4 3 2 6 6 N 1.35046 * 108.69814 * 359.76625 * 5 4 3 7 7 C 1.46503 * 126.39683 * 180.26922 * 6 5 4 8 8 C 1.50703 * 109.47110 * 265.11654 * 7 6 5 9 9 O 1.21282 * 119.99607 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99781 * 180.02562 * 8 7 6 11 11 C 1.46926 * 120.63108 * 354.87484 * 10 8 7 12 12 C 1.53191 * 108.77359 * 126.36894 * 11 10 8 13 13 C 1.53043 * 109.31570 * 54.63353 * 12 11 10 14 14 C 1.53039 * 109.53654 * 298.63626 * 13 12 11 15 15 C 1.46931 * 120.62764 * 174.59333 * 10 8 7 16 16 H 1.09000 * 109.58131 * 113.84208 * 15 10 8 17 17 C 1.53001 * 109.58749 * 353.42114 * 15 10 8 18 18 H 1.09006 * 109.87101 * 320.58984 * 17 15 10 19 19 C 1.54322 * 109.88231 * 81.59995 * 17 15 10 20 20 C 1.55154 * 102.93830 * 141.61155 * 19 17 15 21 21 C 1.54909 * 101.58623 * 324.49757 * 20 19 17 22 22 N 1.47016 * 109.88090 * 199.57369 * 17 15 10 23 23 C 1.36930 * 125.65141 * 61.60640 * 22 17 15 24 24 H 1.08005 * 120.00483 * 18.72477 * 23 22 17 25 25 C 1.38817 * 120.00300 * 198.72611 * 23 22 17 26 26 N 1.31621 * 119.99615 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00212 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47243 * 59.99821 * 27 25 23 29 29 H 1.48499 * 109.47158 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.47284 * 299.99915 * 27 25 23 31 31 H 1.09002 * 109.46806 * 90.02690 * 1 2 3 32 32 H 1.08991 * 109.47429 * 330.02469 * 1 2 3 33 33 H 1.08998 * 109.46532 * 210.02411 * 1 2 3 34 34 H 1.08005 * 125.98771 * 359.96002 * 3 2 1 35 35 H 1.08003 * 125.65269 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.46989 * 25.11608 * 7 6 5 37 37 H 1.08999 * 109.46608 * 145.11623 * 7 6 5 38 38 H 1.09004 * 109.58468 * 246.15347 * 11 10 8 39 39 H 1.08999 * 109.58907 * 6.57957 * 11 10 8 40 40 H 1.09001 * 109.49628 * 174.58611 * 12 11 10 41 41 H 1.08995 * 109.49957 * 294.64680 * 12 11 10 42 42 H 1.09005 * 109.45985 * 58.65447 * 13 12 11 43 43 H 1.08993 * 109.46338 * 178.61042 * 13 12 11 44 44 H 1.08998 * 109.50017 * 181.31225 * 14 13 12 45 45 H 1.08995 * 109.49805 * 301.37710 * 14 13 12 46 46 H 1.08994 * 110.72190 * 259.97327 * 19 17 15 47 47 H 1.08994 * 110.72219 * 23.07437 * 19 17 15 48 48 H 1.08999 * 111.00500 * 82.57437 * 20 19 17 49 49 H 1.09009 * 111.00645 * 206.38857 * 20 19 17 50 50 H 1.08994 * 110.37092 * 155.84355 * 21 20 19 51 51 H 1.08999 * 110.36974 * 278.17571 * 21 20 19 52 52 H 0.96994 * 119.99821 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6543 0.0006 5 6 3.5969 -0.6506 0.0004 6 7 2.3230 -1.0989 0.0049 7 6 1.8945 -2.4999 0.0118 8 6 1.6291 -2.9510 -1.4014 9 8 1.7832 -2.1784 -2.3235 10 7 1.2204 -4.2128 -1.6404 11 6 1.1368 -5.1921 -0.5483 12 6 -0.2704 -5.7976 -0.5358 13 6 -0.5875 -6.3702 -1.9191 14 6 -0.5542 -5.2468 -2.9579 15 6 0.8443 -4.6336 -2.9970 16 1 1.5557 -5.3755 -3.3598 17 6 0.8444 -3.4201 -3.9289 18 1 0.4332 -2.5543 -3.4098 19 6 2.2836 -3.1172 -4.3961 20 6 2.0875 -2.7008 -5.8778 21 6 0.9261 -3.6299 -6.3110 22 7 0.0447 -3.7105 -5.1279 23 6 -1.2920 -4.0073 -5.1431 24 1 -1.9110 -3.7548 -4.2948 25 6 -1.8516 -4.6327 -6.2488 26 7 -1.0974 -4.9400 -7.2829 27 14 -3.6749 -5.0382 -6.2693 28 1 -4.4620 -3.7868 -6.1284 29 1 -4.0209 -5.6980 -7.5539 30 1 -3.9916 -5.9516 -5.1421 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3634 0.8901 0.5134 33 1 -0.3632 -0.8898 0.5142 34 1 1.9864 2.1118 -0.0006 35 1 4.4820 -1.2695 0.0011 36 1 2.6789 -3.1176 0.4491 37 1 0.9833 -2.5981 0.6018 38 1 1.8724 -5.9806 -0.7074 39 1 1.3297 -4.6961 0.4029 40 1 -0.3172 -6.5939 0.2071 41 1 -0.9969 -5.0243 -0.2863 42 1 0.1540 -7.1261 -2.1779 43 1 -1.5785 -6.8235 -1.9061 44 1 -0.8030 -5.6511 -3.9391 45 1 -1.2785 -4.4789 -2.6866 46 1 2.7122 -2.2981 -3.8188 47 1 2.9084 -4.0073 -4.3224 48 1 1.7985 -1.6526 -5.9541 49 1 2.9862 -2.8996 -6.4619 50 1 0.3881 -3.1968 -7.1542 51 1 1.3069 -4.6178 -6.5698 52 1 -1.4885 -5.3767 -8.0556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025253658.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:53 Heat of formation + Delta-G solvation = 73.024835 kcal Electronic energy + Delta-G solvation = -33339.571121 eV Core-core repulsion = 29341.609597 eV Total energy + Delta-G solvation = -3997.961523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.05771 -41.68640 -38.92975 -38.12491 -35.11639 -34.53966 -33.74405 -32.87865 -32.65397 -31.02803 -29.08689 -28.31300 -27.27992 -26.60437 -25.65996 -23.85520 -22.57190 -22.33604 -21.78280 -21.03457 -20.80891 -20.08709 -18.96106 -18.08371 -17.70774 -17.11511 -16.69361 -16.52749 -16.11687 -15.79204 -15.53749 -15.39092 -15.14680 -14.82464 -14.55767 -14.47310 -14.08111 -13.95901 -13.95397 -13.86849 -13.68043 -13.63166 -13.52985 -13.34115 -13.14223 -12.95707 -12.74850 -12.64369 -12.38315 -12.16424 -12.01572 -11.88981 -11.76080 -11.41388 -11.39542 -11.22426 -10.92920 -10.88512 -10.82536 -10.49034 -9.94190 -9.43848 -9.16812 -8.61604 -7.82082 -5.17384 1.04541 1.43780 1.45742 1.51863 1.59919 1.76052 2.17666 2.29243 2.51751 3.31846 3.48723 3.74115 3.81469 3.83495 3.92328 3.97563 4.02263 4.09635 4.11203 4.13872 4.24997 4.30256 4.31287 4.42940 4.48427 4.56397 4.58845 4.72331 4.73696 4.79433 4.87997 4.88937 4.91820 4.97190 5.04579 5.08171 5.13869 5.18173 5.28347 5.37651 5.45089 5.47633 5.53170 5.56440 5.65153 5.74129 5.75356 5.86297 5.91777 6.25143 6.31094 6.56724 7.12598 7.17835 7.30681 7.82561 8.54915 9.30035 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.003988 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.060518 B = 7018.911430 C = 7708.580312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.015 4.015 3 C -0.060 4.060 4 N -0.532 5.532 5 C 0.185 3.815 6 N -0.441 5.441 7 C 0.090 3.910 8 C 0.477 3.523 9 O -0.539 6.539 10 N -0.598 5.598 11 C 0.100 3.900 12 C -0.127 4.127 13 C -0.122 4.122 14 C -0.112 4.112 15 C 0.153 3.847 16 H 0.046 0.954 17 C 0.169 3.831 18 H 0.046 0.954 19 C -0.097 4.097 20 C -0.141 4.141 21 C 0.184 3.816 22 N -0.614 5.614 23 C -0.210 4.210 24 H 0.073 0.927 25 C -0.059 4.059 26 N -0.948 5.948 27 Si 0.959 3.041 28 H -0.284 1.284 29 H -0.298 1.298 30 H -0.270 1.270 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.173 0.827 35 H 0.231 0.769 36 H 0.163 0.837 37 H 0.143 0.857 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.039 0.961 46 H 0.091 0.909 47 H 0.048 0.952 48 H 0.048 0.952 49 H 0.074 0.926 50 H 0.022 0.978 51 H 0.000 1.000 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.711 -0.980 22.089 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C -0.207 4.207 4 N -0.251 5.251 5 C -0.097 4.097 6 N -0.124 5.124 7 C -0.036 4.036 8 C 0.264 3.736 9 O -0.417 6.417 10 N -0.332 5.332 11 C -0.021 4.021 12 C -0.164 4.164 13 C -0.160 4.160 14 C -0.150 4.150 15 C 0.047 3.953 16 H 0.064 0.936 17 C 0.063 3.937 18 H 0.063 0.937 19 C -0.134 4.134 20 C -0.180 4.180 21 C 0.058 3.942 22 N -0.339 5.339 23 C -0.339 4.339 24 H 0.091 0.909 25 C -0.253 4.253 26 N -0.596 5.596 27 Si 0.788 3.212 28 H -0.210 1.210 29 H -0.224 1.224 30 H -0.196 1.196 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.190 0.810 35 H 0.247 0.753 36 H 0.180 0.820 37 H 0.161 0.839 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.109 0.891 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.092 0.908 50 H 0.040 0.960 51 H 0.018 0.982 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.294 -0.288 21.482 22.387 hybrid contribution -1.807 -0.844 -1.293 2.377 sum 4.487 -1.133 20.190 20.713 Atomic orbital electron populations 1.20240 0.86092 1.04555 1.02219 1.21517 0.95408 0.86880 1.09175 1.22265 0.88634 0.99312 1.10449 1.70187 1.23281 1.10466 1.21138 1.25404 0.88083 0.91574 1.04686 1.45021 1.07041 1.06189 1.54129 1.22027 1.06760 0.80215 0.94556 1.21312 0.78012 0.82335 0.91899 1.90787 1.51144 1.55064 1.44680 1.48289 1.64922 1.10622 1.09368 1.22129 0.97915 0.92292 0.89765 1.21895 0.96671 1.01299 0.96581 1.21609 1.01499 0.97362 0.95542 1.21935 0.95323 0.97594 1.00185 1.21559 0.95467 0.96894 0.81345 0.93554 1.21493 0.91363 0.93912 0.86935 0.93675 1.22710 0.95688 1.00504 0.94534 1.22906 0.98619 0.98724 0.97712 1.21119 0.89090 0.94205 0.89776 1.45034 1.05116 1.81957 1.01832 1.19059 0.83706 1.29278 1.01885 0.90912 1.25602 1.01388 1.00885 0.97386 1.70128 1.35352 1.47362 1.06763 0.85433 0.81001 0.78017 0.76716 1.21005 1.22437 1.19580 0.92756 0.88285 0.90393 0.80998 0.75324 0.81991 0.83943 0.89861 0.86089 0.87901 0.91900 0.92161 0.92340 0.91423 0.94214 0.89148 0.93298 0.93297 0.90779 0.95972 0.98179 0.94593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.18 71.24 0.73 -0.67 16 2 C -0.02 -0.36 6.95 40.95 0.28 -0.07 16 3 C -0.06 -1.63 11.79 83.53 0.98 -0.65 16 4 N -0.53 -15.45 11.25 -200.30 -2.25 -17.70 16 5 C 0.18 4.19 12.56 180.26 2.26 6.45 16 6 N -0.44 -9.19 2.24 -518.60 -1.16 -10.35 16 7 C 0.09 1.24 4.77 85.63 0.41 1.65 16 8 C 0.48 11.58 7.47 87.66 0.66 12.23 16 9 O -0.54 -18.55 9.30 -3.04 -0.03 -18.58 16 10 N -0.60 -14.21 2.98 -795.81 -2.37 -16.58 16 11 C 0.10 1.32 6.35 86.36 0.55 1.87 16 12 C -0.13 -1.98 6.08 30.67 0.19 -1.79 16 13 C -0.12 -3.10 5.89 30.62 0.18 -2.92 16 14 C -0.11 -4.07 3.74 30.53 0.11 -3.95 16 15 C 0.15 5.32 2.76 44.83 0.12 5.44 16 16 H 0.05 1.73 7.64 -2.39 -0.02 1.71 16 17 C 0.17 7.23 2.37 45.34 0.11 7.33 16 18 H 0.05 2.16 5.77 -7.02 -0.04 2.12 16 19 C -0.10 -3.88 5.56 31.78 0.18 -3.70 16 20 C -0.14 -6.07 7.08 31.99 0.23 -5.84 16 21 C 0.18 9.61 5.38 86.79 0.47 10.07 16 22 N -0.61 -31.77 3.03 -667.44 -2.02 -33.80 16 23 C -0.21 -11.42 6.59 84.04 0.55 -10.87 16 24 H 0.07 3.87 6.31 -2.91 -0.02 3.85 16 25 C -0.06 -3.33 5.46 84.86 0.46 -2.86 16 26 N -0.95 -57.08 10.77 21.65 0.23 -56.85 16 27 Si 0.96 45.21 29.55 68.60 2.03 47.24 16 28 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 29 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 30 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.16 7.33 -2.39 -0.02 1.14 16 34 H 0.17 4.02 8.06 -2.91 -0.02 3.99 16 35 H 0.23 3.38 8.06 -2.91 -0.02 3.36 16 36 H 0.16 0.83 7.72 -2.39 -0.02 0.81 16 37 H 0.14 1.22 7.11 -2.39 -0.02 1.20 16 38 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.12 0.53 5.93 -2.39 -0.01 0.52 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 3.15 5.83 -2.39 -0.01 3.14 16 45 H 0.04 1.55 6.83 -2.39 -0.02 1.54 16 46 H 0.09 3.65 5.58 -9.38 -0.05 3.59 16 47 H 0.05 1.86 7.53 -2.39 -0.02 1.84 16 48 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 50 H 0.02 1.29 7.23 -2.39 -0.02 1.27 16 51 H 0.00 0.01 7.98 -2.39 -0.02 -0.01 16 52 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -78.61 387.91 3.74 -74.87 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.85 Total: 20.01 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 8.47 Total: 11.74 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -7.57 Total: -135.27 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.03 Total: -18.58 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -78.61 3.74 -74.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025253658.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.893 kcal (2) G-P(sol) polarization free energy of solvation -78.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds