Wall clock time and date at job start Wed Apr 1 2020 04:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34669 * 126.59068 * 2 1 4 4 N 1.34126 * 108.01996 * 180.28291 * 3 2 1 5 5 C 1.30498 * 109.25564 * 359.73007 * 4 3 2 6 6 N 1.35044 * 108.70246 * 359.97438 * 5 4 3 7 7 C 1.46492 * 126.40201 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47149 * 266.70751 * 7 6 5 9 9 O 1.21280 * 119.99847 * 355.73985 * 8 7 6 10 10 N 1.34779 * 120.00102 * 175.74198 * 8 7 6 11 11 C 1.46923 * 120.63273 * 0.44660 * 10 8 7 12 12 C 1.53185 * 108.77580 * 126.39058 * 11 10 8 13 13 C 1.53038 * 109.31357 * 54.63689 * 12 11 10 14 14 C 1.53033 * 109.53866 * 298.63533 * 13 12 11 15 15 C 1.46925 * 120.62917 * 180.44605 * 10 8 7 16 16 H 1.09001 * 109.70509 * 113.74981 * 15 10 8 17 17 C 1.53001 * 109.58807 * 353.39615 * 15 10 8 18 18 H 1.08999 * 109.87512 * 54.33251 * 17 15 10 19 19 C 1.54315 * 109.88271 * 293.15230 * 17 15 10 20 20 C 1.55158 * 102.94618 * 218.38798 * 19 17 15 21 21 C 1.54913 * 101.57802 * 35.50512 * 20 19 17 22 22 N 1.47028 * 109.88151 * 175.34291 * 17 15 10 23 23 C 1.36933 * 125.65079 * 298.09190 * 22 17 15 24 24 H 1.08001 * 120.00174 * 148.21170 * 23 22 17 25 25 C 1.38816 * 119.99945 * 328.21282 * 23 22 17 26 26 N 1.31621 * 119.99825 * 162.57036 * 25 23 22 27 27 Si 1.86800 * 120.00044 * 342.57077 * 25 23 22 28 28 H 1.48500 * 109.47319 * 87.08994 * 27 25 23 29 29 H 1.48495 * 109.47141 * 207.09018 * 27 25 23 30 30 H 1.48499 * 109.46807 * 327.09093 * 27 25 23 31 31 H 1.09001 * 109.47212 * 270.16821 * 1 2 3 32 32 H 1.08996 * 109.47474 * 30.16555 * 1 2 3 33 33 H 1.08995 * 109.47322 * 150.17252 * 1 2 3 34 34 H 1.08008 * 125.99005 * 359.97313 * 3 2 1 35 35 H 1.08001 * 125.65060 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.47523 * 146.70300 * 7 6 5 37 37 H 1.09008 * 109.47020 * 26.70457 * 7 6 5 38 38 H 1.08998 * 109.58563 * 6.60139 * 11 10 8 39 39 H 1.08997 * 109.70591 * 246.25058 * 11 10 8 40 40 H 1.09002 * 109.50274 * 294.68379 * 12 11 10 41 41 H 1.09001 * 109.52328 * 174.60621 * 12 11 10 42 42 H 1.08996 * 109.46009 * 178.61244 * 13 12 11 43 43 H 1.09000 * 109.46059 * 58.65723 * 13 12 11 44 44 H 1.09006 * 109.49853 * 301.40878 * 14 13 12 45 45 H 1.09005 * 109.52766 * 181.33139 * 14 13 12 46 46 H 1.09001 * 110.72377 * 336.75378 * 19 17 15 47 47 H 1.08999 * 110.72210 * 100.02508 * 19 17 15 48 48 H 1.09002 * 111.00694 * 153.57096 * 20 19 17 49 49 H 1.08992 * 111.00686 * 277.43288 * 20 19 17 50 50 H 1.09001 * 110.36517 * 204.15514 * 21 20 19 51 51 H 1.08998 * 110.37283 * 81.82665 * 21 20 19 52 52 H 0.96996 * 119.99663 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5812 0.6541 -0.0063 5 6 3.5968 -0.6508 -0.0044 6 7 2.3229 -1.0991 0.0038 7 6 1.8943 -2.4999 0.0090 8 6 1.6611 -2.9591 -1.4072 9 8 1.7606 -2.1716 -2.3242 10 7 1.3420 -4.2449 -1.6548 11 6 1.2082 -5.2084 -0.5537 12 6 -0.1607 -5.8882 -0.6570 13 6 -0.3178 -6.5007 -2.0506 14 6 -0.2467 -5.3952 -3.1065 15 6 1.1212 -4.7098 -3.0310 16 1 1.9011 -5.4188 -3.3090 17 6 1.1499 -3.5153 -3.9867 18 1 2.0772 -2.9577 -3.8552 19 6 -0.0610 -2.5977 -3.7163 20 6 -0.4813 -2.1481 -5.1406 21 6 -0.1873 -3.4238 -5.9688 22 7 1.0410 -3.9838 -5.3760 23 6 1.9352 -4.8003 -6.0154 24 1 1.5916 -5.4892 -6.7729 25 6 3.2835 -4.7424 -5.6899 26 7 4.0855 -5.7291 -6.0302 27 14 3.9595 -3.2644 -4.7691 28 1 3.8074 -3.4797 -3.3077 29 1 5.3975 -3.0922 -5.0971 30 1 3.2109 -2.0464 -5.1706 31 1 -0.3634 0.0030 1.0277 32 1 -0.3634 0.8884 -0.5164 33 1 -0.3634 -0.8915 -0.5111 34 1 1.9864 2.1118 -0.0004 35 1 4.4818 -1.2697 -0.0079 36 1 0.9699 -2.5949 0.5787 37 1 2.6686 -3.1150 0.4676 38 1 1.2860 -4.6865 0.4000 39 1 1.9953 -5.9591 -0.6246 40 1 -0.9465 -5.1508 -0.4930 41 1 -0.2354 -6.6729 0.0959 42 1 -1.2810 -7.0063 -2.1185 43 1 0.4826 -7.2201 -2.2235 44 1 -1.0316 -4.6624 -2.9195 45 1 -0.3822 -5.8286 -4.0974 46 1 -0.8656 -3.1529 -3.2341 47 1 0.2327 -1.7395 -3.1120 48 1 -1.5413 -1.8964 -5.1740 49 1 0.1283 -1.3116 -5.4820 50 1 -0.0205 -3.1669 -7.0149 51 1 -1.0098 -4.1331 -5.8780 52 1 5.0275 -5.6888 -5.8024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025253659.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:56 Heat of formation + Delta-G solvation = 75.944244 kcal Electronic energy + Delta-G solvation = -34082.640122 eV Core-core repulsion = 30084.805193 eV Total energy + Delta-G solvation = -3997.834928 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.15117 -41.93805 -39.10791 -38.19659 -35.20114 -34.62577 -33.86069 -32.90124 -32.59949 -31.80038 -29.27144 -28.50260 -27.30527 -26.41308 -25.63273 -24.31419 -22.55051 -22.40097 -22.11812 -21.65356 -20.76969 -19.79555 -19.23494 -18.10704 -17.60808 -17.42077 -16.92410 -16.78319 -16.49733 -15.87961 -15.45343 -15.37705 -15.19310 -15.07401 -14.92167 -14.86109 -14.58249 -14.28822 -14.11380 -13.92217 -13.78704 -13.57785 -13.50041 -13.23675 -13.18162 -13.05598 -12.97741 -12.87764 -12.52420 -12.19969 -12.03502 -11.96924 -11.72375 -11.62094 -11.47151 -11.29241 -11.06828 -10.99005 -10.94141 -10.68990 -10.03449 -9.46387 -9.21587 -8.71067 -8.26914 -5.57706 0.96083 1.18766 1.26747 1.41253 1.52438 1.70065 2.09338 2.20834 2.30877 3.03170 3.33959 3.47834 3.72648 3.79383 3.82329 3.86716 3.90524 3.93049 4.03416 4.07696 4.12959 4.19319 4.28798 4.30227 4.43049 4.44762 4.52689 4.66267 4.71073 4.72589 4.77637 4.85090 4.85644 4.95287 4.99264 5.05035 5.06584 5.11677 5.16895 5.21024 5.24372 5.31879 5.38766 5.43063 5.52227 5.56781 5.72500 5.82122 5.84294 6.08789 6.18060 6.46361 6.81816 7.10307 7.17947 7.54627 8.19609 8.93620 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010305 B = 0.005423 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.539485 B = 5162.282415 C = 5889.876357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.006 4.006 3 C -0.064 4.064 4 N -0.531 5.531 5 C 0.170 3.830 6 N -0.441 5.441 7 C 0.090 3.910 8 C 0.471 3.529 9 O -0.541 6.541 10 N -0.598 5.598 11 C 0.094 3.906 12 C -0.121 4.121 13 C -0.120 4.120 14 C -0.112 4.112 15 C 0.147 3.853 16 H 0.031 0.969 17 C 0.136 3.864 18 H 0.059 0.941 19 C -0.111 4.111 20 C -0.129 4.129 21 C 0.124 3.876 22 N -0.626 5.626 23 C -0.220 4.220 24 H 0.055 0.945 25 C -0.011 4.011 26 N -0.948 5.948 27 Si 0.960 3.040 28 H -0.276 1.276 29 H -0.325 1.325 30 H -0.301 1.301 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.178 0.822 35 H 0.215 0.785 36 H 0.160 0.840 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.046 0.954 44 H 0.078 0.922 45 H 0.049 0.951 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.099 0.901 49 H 0.041 0.959 50 H 0.033 0.967 51 H 0.042 0.958 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.034 2.907 21.194 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.121 4.121 3 C -0.210 4.210 4 N -0.250 5.250 5 C -0.112 4.112 6 N -0.124 5.124 7 C -0.035 4.035 8 C 0.259 3.741 9 O -0.419 6.419 10 N -0.332 5.332 11 C -0.028 4.028 12 C -0.159 4.159 13 C -0.158 4.158 14 C -0.150 4.150 15 C 0.042 3.958 16 H 0.049 0.951 17 C 0.032 3.968 18 H 0.076 0.924 19 C -0.148 4.148 20 C -0.168 4.168 21 C -0.001 4.001 22 N -0.353 5.353 23 C -0.350 4.350 24 H 0.073 0.927 25 C -0.207 4.207 26 N -0.595 5.595 27 Si 0.795 3.205 28 H -0.203 1.203 29 H -0.256 1.256 30 H -0.228 1.228 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.195 0.805 35 H 0.231 0.769 36 H 0.177 0.823 37 H 0.167 0.833 38 H 0.141 0.859 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.067 0.933 46 H 0.101 0.899 47 H 0.103 0.897 48 H 0.117 0.883 49 H 0.060 0.940 50 H 0.052 0.948 51 H 0.059 0.941 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.132 3.569 20.673 24.750 hybrid contribution 0.830 -0.130 -0.783 1.148 sum -12.302 3.439 19.890 23.639 Atomic orbital electron populations 1.20302 0.84818 1.03875 1.03938 1.21712 0.95960 0.86194 1.08245 1.22357 0.88316 0.99639 1.10696 1.70176 1.23981 1.10079 1.20737 1.25185 0.88295 0.91758 1.05970 1.45039 1.06916 1.06419 1.54038 1.22034 1.07054 0.80134 0.94295 1.21340 0.78268 0.82394 0.92127 1.90773 1.50672 1.55039 1.45452 1.48260 1.68222 1.08833 1.07913 1.22179 0.98923 0.92331 0.89333 1.21869 0.96278 1.01072 0.96678 1.21544 1.02184 0.96959 0.95098 1.21809 0.95457 0.98241 0.99467 1.21445 0.97224 0.96751 0.80401 0.95074 1.22053 0.99698 0.92229 0.82826 0.92441 1.22967 0.95805 0.99333 0.96664 1.22745 1.01428 0.96458 0.96130 1.21863 0.88711 0.93520 0.95956 1.45110 1.24722 1.56921 1.08517 1.18467 0.86729 1.11366 1.18416 0.92721 1.25626 0.96194 0.98568 1.00339 1.69888 1.05210 1.32072 1.52302 0.85755 0.73893 0.81990 0.78864 1.20254 1.25554 1.22842 0.88386 0.89458 0.91773 0.80465 0.76869 0.82266 0.83292 0.85901 0.91529 0.90129 0.87776 0.90249 0.93532 0.90374 0.93258 0.89919 0.89694 0.88304 0.93973 0.94843 0.94057 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.05 71.24 0.72 -0.38 16 2 C -0.01 -0.15 6.94 40.95 0.28 0.14 16 3 C -0.06 -1.79 11.79 83.52 0.98 -0.80 16 4 N -0.53 -17.37 11.25 -200.30 -2.25 -19.62 16 5 C 0.17 4.79 12.56 180.26 2.26 7.05 16 6 N -0.44 -10.49 2.24 -518.63 -1.16 -11.66 16 7 C 0.09 1.52 4.64 85.63 0.40 1.91 16 8 C 0.47 13.17 7.24 87.66 0.63 13.80 16 9 O -0.54 -20.78 9.02 -3.03 -0.03 -20.81 16 10 N -0.60 -16.25 2.94 -795.06 -2.34 -18.60 16 11 C 0.09 1.48 6.31 86.36 0.54 2.03 16 12 C -0.12 -1.62 6.08 30.67 0.19 -1.44 16 13 C -0.12 -2.61 5.88 30.62 0.18 -2.43 16 14 C -0.11 -3.38 4.96 30.67 0.15 -3.23 16 15 C 0.15 5.49 2.55 44.97 0.11 5.60 16 16 H 0.03 1.49 7.60 -2.39 -0.02 1.47 16 17 C 0.14 5.93 1.06 45.34 0.05 5.98 16 18 H 0.06 2.92 1.02 -14.00 -0.01 2.91 16 19 C -0.11 -3.89 5.06 31.78 0.16 -3.73 16 20 C -0.13 -4.53 7.09 31.99 0.23 -4.31 16 21 C 0.12 5.10 7.23 86.86 0.63 5.73 16 22 N -0.63 -31.04 2.37 -668.24 -1.58 -32.62 16 23 C -0.22 -12.99 10.04 84.04 0.84 -12.14 16 24 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 25 C -0.01 -0.70 5.19 84.86 0.44 -0.26 16 26 N -0.95 -60.98 13.97 21.65 0.30 -60.68 16 27 Si 0.96 54.36 24.35 68.60 1.67 56.03 16 28 H -0.28 -14.85 6.63 99.48 0.66 -14.19 16 29 H -0.33 -18.78 7.11 99.48 0.71 -18.07 16 30 H -0.30 -18.02 7.02 99.48 0.70 -17.32 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.01 7.96 -2.39 -0.02 0.99 16 34 H 0.18 4.14 8.06 -2.91 -0.02 4.11 16 35 H 0.21 4.93 8.06 -2.91 -0.02 4.91 16 36 H 0.16 1.31 7.71 -2.39 -0.02 1.29 16 37 H 0.15 1.61 7.75 -2.38 -0.02 1.59 16 38 H 0.12 0.81 5.95 -2.39 -0.01 0.79 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 2.10 5.55 -2.38 -0.01 2.09 16 45 H 0.05 1.81 7.95 -2.38 -0.02 1.79 16 46 H 0.08 2.46 5.24 -2.39 -0.01 2.45 16 47 H 0.09 3.12 5.61 -6.91 -0.04 3.08 16 48 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 49 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 52 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -87.17 385.97 4.24 -82.93 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.82 Total: 11.50 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 8.81 Total: 13.52 kcal Atomic # 7 Polarization: -136.13 SS G_CDS: -7.04 Total: -143.17 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.03 Total: -20.81 kcal Atomic # 14 Polarization: 54.36 SS G_CDS: 1.67 Total: 56.03 kcal Total: -87.17 4.24 -82.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025253659.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.877 kcal (2) G-P(sol) polarization free energy of solvation -87.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds