Wall clock time and date at job start Wed Apr 1 2020 04:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34661 * 126.59273 * 2 1 4 4 N 1.34125 * 108.02472 * 179.69858 * 3 2 1 5 5 C 1.30505 * 109.25077 * 0.26835 * 4 3 2 6 6 N 1.35041 * 108.70136 * 359.97438 * 5 4 3 7 7 C 1.46502 * 126.39483 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47366 * 264.97730 * 7 6 5 9 9 O 1.21287 * 119.99836 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00139 * 180.02562 * 8 7 6 11 11 C 1.46927 * 120.62941 * 353.39849 * 10 8 7 12 12 C 1.52762 * 109.00733 * 233.58597 * 11 10 8 13 13 C 1.53049 * 109.38145 * 305.58419 * 12 11 10 14 14 C 1.53041 * 109.53297 * 61.24559 * 13 12 11 15 15 C 1.46926 * 120.63300 * 173.67790 * 10 8 7 16 16 H 1.08998 * 109.58912 * 246.30154 * 15 10 8 17 17 C 1.53003 * 109.58740 * 6.58370 * 15 10 8 18 18 H 1.08999 * 109.87369 * 46.61132 * 17 15 10 19 19 C 1.54324 * 109.88096 * 285.44038 * 17 15 10 20 20 C 1.55151 * 102.94436 * 218.39040 * 19 17 15 21 21 C 1.54908 * 101.58454 * 35.49713 * 20 19 17 22 22 N 1.47023 * 109.88405 * 167.63181 * 17 15 10 23 23 C 1.36936 * 125.64647 * 298.31637 * 22 17 15 24 24 H 1.08001 * 120.00059 * 341.73632 * 23 22 17 25 25 C 1.38809 * 119.99544 * 161.72954 * 23 22 17 26 26 N 1.31617 * 120.00613 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99783 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47344 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47160 * 120.00110 * 27 25 23 30 30 H 1.48500 * 109.47146 * 240.00091 * 27 25 23 31 31 H 1.08998 * 109.47277 * 90.02299 * 1 2 3 32 32 H 1.09006 * 109.47481 * 210.02856 * 1 2 3 33 33 H 1.08999 * 109.47249 * 330.01943 * 1 2 3 34 34 H 1.08002 * 125.98925 * 359.96367 * 3 2 1 35 35 H 1.08004 * 125.64460 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47033 * 24.98309 * 7 6 5 37 37 H 1.09000 * 109.46344 * 144.98014 * 7 6 5 38 38 H 1.09000 * 109.58960 * 353.41590 * 11 10 8 39 39 H 1.08999 * 109.58770 * 113.84969 * 11 10 8 40 40 H 1.08998 * 109.56529 * 185.55458 * 12 11 10 41 41 H 1.08995 * 109.38833 * 65.51467 * 12 11 10 42 42 H 1.08993 * 109.46317 * 301.22015 * 13 12 11 43 43 H 1.09007 * 109.44640 * 181.25078 * 13 12 11 44 44 H 1.09006 * 109.49068 * 178.68052 * 14 13 12 45 45 H 1.08997 * 109.52842 * 58.60481 * 14 13 12 46 46 H 1.09000 * 110.72116 * 336.75039 * 19 17 15 47 47 H 1.09004 * 110.72416 * 100.02216 * 19 17 15 48 48 H 1.09004 * 111.00448 * 277.42672 * 20 19 17 49 49 H 1.09000 * 111.04117 * 153.59126 * 20 19 17 50 50 H 1.08996 * 110.37294 * 204.15469 * 21 20 19 51 51 H 1.09001 * 110.45595 * 81.87426 * 21 20 19 52 52 H 0.96997 * 120.00583 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5812 0.6541 0.0067 5 6 3.5967 -0.6509 0.0051 6 7 2.3229 -1.0991 -0.0022 7 6 1.8943 -2.5000 -0.0057 8 6 1.6361 -2.9428 -1.4228 9 8 1.7949 -2.1648 -2.3397 10 7 1.2287 -4.2032 -1.6714 11 6 1.1702 -5.1977 -0.5915 12 6 1.9666 -6.4327 -1.0088 13 6 1.4500 -6.9382 -2.3579 14 6 1.6457 -5.8536 -3.4197 15 6 0.8404 -4.6105 -3.0286 16 1 -0.2248 -4.8408 -3.0504 17 6 1.1399 -3.4757 -4.0102 18 1 2.1414 -3.0848 -3.8303 19 6 0.0966 -2.3505 -3.8458 20 6 -0.1479 -1.8871 -5.3061 21 6 -0.0338 -3.2242 -6.0800 22 7 1.0362 -3.9688 -5.3914 23 6 1.8065 -4.9555 -5.9464 24 1 2.7409 -5.2361 -5.4832 25 6 1.3863 -5.5951 -7.1045 26 7 0.2478 -5.2529 -7.6693 27 14 2.4367 -6.9417 -7.8614 28 1 3.6592 -7.1358 -7.0411 29 1 1.6626 -8.2082 -7.9043 30 1 2.8237 -6.5511 -9.2409 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3634 -0.8898 0.5143 33 1 -0.3634 0.8901 0.5135 34 1 1.9865 2.1117 -0.0006 35 1 4.4819 -1.2697 0.0090 36 1 2.6764 -3.1203 0.4320 37 1 0.9801 -2.6016 0.5790 38 1 1.6012 -4.7766 0.3169 39 1 0.1331 -5.4794 -0.4098 40 1 1.8484 -7.2141 -0.2581 41 1 3.0207 -6.1704 -1.0980 42 1 0.3899 -7.1775 -2.2743 43 1 2.0026 -7.8325 -2.6461 44 1 1.2991 -6.2229 -4.3850 45 1 2.7027 -5.5961 -3.4870 46 1 -0.8221 -2.7378 -3.4052 47 1 0.4998 -1.5354 -3.2448 48 1 0.6205 -1.1835 -5.6266 49 1 -1.1420 -1.4544 -5.4182 50 1 0.2405 -3.0393 -7.1185 51 1 -0.9728 -3.7753 -6.0287 52 1 -0.0457 -5.6996 -8.4788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025253662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:05 Heat of formation + Delta-G solvation = 93.386368 kcal Electronic energy + Delta-G solvation = -33301.483252 eV Core-core repulsion = 29304.404671 eV Total energy + Delta-G solvation = -3997.078581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.14615 -40.50067 -37.41754 -36.86386 -34.11926 -32.83181 -32.40890 -31.93627 -31.42566 -29.15578 -28.03893 -26.91613 -26.42141 -24.67471 -24.51928 -22.55970 -21.55261 -21.21674 -20.20616 -19.67370 -19.44932 -19.02113 -17.43331 -17.11255 -16.29091 -15.77704 -15.45796 -15.26718 -14.73159 -14.49335 -14.38693 -14.03977 -13.91813 -13.81807 -13.59875 -13.14918 -13.04946 -12.96672 -12.85900 -12.61886 -12.50665 -12.41685 -12.22989 -11.95174 -11.66136 -11.45496 -11.08384 -10.94404 -10.89564 -10.75508 -10.61445 -10.18568 -10.15288 -10.03236 -9.92221 -9.81420 -9.65947 -9.48884 -9.32506 -8.77468 -8.38809 -8.23212 -8.16764 -6.62685 -5.74966 -3.08321 1.97892 2.59944 2.60465 3.17032 3.26834 3.36091 3.43170 3.44592 4.34964 4.45432 4.48787 4.64020 4.69770 4.73993 4.78615 4.94567 5.06398 5.10146 5.33533 5.39961 5.43526 5.48936 5.50232 5.54336 5.66952 5.75265 5.75793 5.80444 5.86865 5.94713 6.05173 6.06355 6.15397 6.22151 6.28769 6.36587 6.47691 6.58519 6.60739 6.74366 6.78530 6.88077 6.93387 7.05245 7.15677 7.30070 7.50019 7.56580 7.60389 7.71965 7.83350 8.11680 8.26676 8.42018 9.21986 9.83965 10.57585 11.37103 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013348 B = 0.003902 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.171566 B = 7174.480467 C = 8180.206136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.012 4.012 3 C -0.032 4.032 4 N -0.493 5.493 5 C 0.188 3.812 6 N -0.439 5.439 7 C 0.083 3.917 8 C 0.476 3.524 9 O -0.485 6.485 10 N -0.601 5.601 11 C 0.107 3.893 12 C -0.134 4.134 13 C -0.124 4.124 14 C -0.129 4.129 15 C 0.141 3.859 16 H 0.060 0.940 17 C 0.168 3.832 18 H 0.068 0.932 19 C -0.118 4.118 20 C -0.150 4.150 21 C 0.175 3.825 22 N -0.596 5.596 23 C -0.221 4.221 24 H 0.075 0.925 25 C -0.004 4.004 26 N -0.912 5.912 27 Si 0.900 3.100 28 H -0.279 1.279 29 H -0.290 1.290 30 H -0.291 1.291 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.166 0.834 35 H 0.200 0.800 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.120 0.880 45 H 0.056 0.944 46 H 0.040 0.960 47 H 0.091 0.909 48 H 0.054 0.946 49 H 0.050 0.950 50 H 0.059 0.941 51 H 0.024 0.976 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 2.011 19.594 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C -0.179 4.179 4 N -0.210 5.210 5 C -0.094 4.094 6 N -0.122 5.122 7 C -0.044 4.044 8 C 0.262 3.738 9 O -0.359 6.359 10 N -0.336 5.336 11 C -0.017 4.017 12 C -0.172 4.172 13 C -0.161 4.161 14 C -0.167 4.167 15 C 0.037 3.963 16 H 0.078 0.922 17 C 0.061 3.939 18 H 0.085 0.915 19 C -0.155 4.155 20 C -0.189 4.189 21 C 0.050 3.950 22 N -0.321 5.321 23 C -0.350 4.350 24 H 0.093 0.907 25 C -0.201 4.201 26 N -0.558 5.558 27 Si 0.730 3.270 28 H -0.204 1.204 29 H -0.217 1.217 30 H -0.218 1.218 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.183 0.817 35 H 0.217 0.783 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.138 0.862 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.109 0.891 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.078 0.922 51 H 0.042 0.958 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.264 2.680 18.887 19.078 hybrid contribution -0.275 -1.697 -0.414 1.769 sum -0.539 0.983 18.473 18.507 Atomic orbital electron populations 1.20213 0.87502 1.02646 1.03104 1.21169 0.94421 0.86716 1.10299 1.21951 0.88437 0.98250 1.09303 1.70243 1.22441 1.08777 1.19583 1.24802 0.86929 0.91791 1.05851 1.44873 1.07367 1.05379 1.54622 1.21790 1.03722 0.81175 0.97672 1.20497 0.80194 0.82779 0.90329 1.90812 1.48365 1.53473 1.43284 1.48341 1.65747 1.08926 1.10606 1.21628 1.00709 0.89936 0.89409 1.21841 1.00105 0.96707 0.98526 1.21634 1.00679 0.99218 0.94617 1.22368 1.00191 0.93608 1.00508 1.22316 0.97497 0.97786 0.78695 0.92157 1.21552 0.98774 0.89582 0.83978 0.91509 1.22998 0.96665 0.99216 0.96635 1.23006 0.99204 0.99732 0.96962 1.21323 0.91218 0.86939 0.95511 1.44728 1.40120 1.41827 1.05444 1.19001 0.99559 1.09620 1.06777 0.90708 1.24948 0.96722 0.99267 0.99167 1.69957 1.21252 1.43460 1.21101 0.86226 0.79481 0.82038 0.79236 1.20366 1.21713 1.21753 0.90525 0.92236 0.90183 0.81704 0.78303 0.86525 0.87004 0.90886 0.91432 0.91381 0.91753 0.92401 0.92164 0.86249 0.92564 0.94132 0.89128 0.92687 0.93133 0.92249 0.95786 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.17 36.01 0.37 -0.35 16 2 C -0.01 -0.15 6.95 -81.60 -0.57 -0.71 16 3 C -0.03 -0.44 11.79 -17.82 -0.21 -0.65 16 4 N -0.49 -7.44 11.25 -14.67 -0.17 -7.60 16 5 C 0.19 2.42 12.56 -90.37 -1.13 1.28 16 6 N -0.44 -5.21 2.24 -115.28 -0.26 -5.47 16 7 C 0.08 0.78 4.85 -5.20 -0.03 0.75 16 8 C 0.48 6.47 7.37 -10.99 -0.08 6.38 16 9 O -0.48 -8.61 9.11 5.55 0.05 -8.56 16 10 N -0.60 -8.03 2.98 -165.48 -0.49 -8.52 16 11 C 0.11 0.99 6.29 -3.93 -0.02 0.97 16 12 C -0.13 -1.36 6.07 -26.83 -0.16 -1.52 16 13 C -0.12 -1.68 5.89 -26.68 -0.16 -1.83 16 14 C -0.13 -2.32 3.81 -26.61 -0.10 -2.42 16 15 C 0.14 2.49 2.66 -67.60 -0.18 2.31 16 16 H 0.06 1.14 7.83 -51.93 -0.41 0.74 16 17 C 0.17 3.55 2.30 -66.95 -0.15 3.39 16 18 H 0.07 1.58 5.97 -51.66 -0.31 1.28 16 19 C -0.12 -2.30 5.33 -24.90 -0.13 -2.44 16 20 C -0.15 -3.13 7.08 -24.59 -0.17 -3.31 16 21 C 0.18 4.35 5.37 -2.53 -0.01 4.33 16 22 N -0.60 -14.86 3.10 -162.57 -0.50 -15.37 16 23 C -0.22 -5.82 6.79 -15.06 -0.10 -5.93 16 24 H 0.08 1.95 6.45 -52.49 -0.34 1.61 16 25 C 0.00 -0.10 5.46 -17.43 -0.10 -0.19 16 26 N -0.91 -26.17 10.73 55.49 0.60 -25.57 16 27 Si 0.90 21.44 29.55 -169.99 -5.02 16.41 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.48 7.33 -51.93 -0.38 0.10 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.20 1.93 8.06 -52.48 -0.42 1.51 16 36 H 0.12 0.76 7.41 -51.93 -0.38 0.37 16 37 H 0.11 0.78 7.35 -51.93 -0.38 0.40 16 38 H 0.07 0.45 5.97 -51.93 -0.31 0.14 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.12 2.62 5.55 -51.93 -0.29 2.34 16 45 H 0.06 1.08 7.42 -51.93 -0.39 0.70 16 46 H 0.04 0.76 7.65 -51.93 -0.40 0.37 16 47 H 0.09 1.79 5.41 -53.57 -0.29 1.50 16 48 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.06 1.64 7.20 -51.93 -0.37 1.26 16 51 H 0.02 0.64 7.97 -51.93 -0.41 0.23 16 52 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 388.24 15.07 5.85 5.85 Total: -1.00 -32.90 388.24 -11.34 -44.24 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -8.44 Total: 4.51 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.95 Total: 0.08 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.82 Total: -62.53 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.05 Total: -8.56 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.90 -11.34 -44.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025253662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.628 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds