Wall clock time and date at job start Wed Apr 1 2020 04:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34661 * 126.59273 * 2 1 4 4 N 1.34125 * 108.02472 * 179.69858 * 3 2 1 5 5 C 1.30505 * 109.25077 * 0.26835 * 4 3 2 6 6 N 1.35041 * 108.70136 * 359.97438 * 5 4 3 7 7 C 1.46502 * 126.39483 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47366 * 264.97730 * 7 6 5 9 9 O 1.21287 * 119.99836 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00139 * 180.02562 * 8 7 6 11 11 C 1.46927 * 120.62941 * 353.39849 * 10 8 7 12 12 C 1.52762 * 109.00733 * 233.58597 * 11 10 8 13 13 C 1.53049 * 109.38145 * 305.58419 * 12 11 10 14 14 C 1.53041 * 109.53297 * 61.24559 * 13 12 11 15 15 C 1.46926 * 120.63300 * 173.67790 * 10 8 7 16 16 H 1.08998 * 109.58912 * 246.30154 * 15 10 8 17 17 C 1.53003 * 109.58740 * 6.58370 * 15 10 8 18 18 H 1.08999 * 109.87369 * 46.61132 * 17 15 10 19 19 C 1.54324 * 109.88096 * 285.44038 * 17 15 10 20 20 C 1.55151 * 102.94436 * 218.39040 * 19 17 15 21 21 C 1.54908 * 101.58454 * 35.49713 * 20 19 17 22 22 N 1.47023 * 109.88405 * 167.63181 * 17 15 10 23 23 C 1.36936 * 125.64647 * 298.31637 * 22 17 15 24 24 H 1.08001 * 120.00059 * 341.73632 * 23 22 17 25 25 C 1.38809 * 119.99544 * 161.72954 * 23 22 17 26 26 N 1.31617 * 120.00613 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99783 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47344 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47160 * 120.00110 * 27 25 23 30 30 H 1.48500 * 109.47146 * 240.00091 * 27 25 23 31 31 H 1.08998 * 109.47277 * 90.02299 * 1 2 3 32 32 H 1.09006 * 109.47481 * 210.02856 * 1 2 3 33 33 H 1.08999 * 109.47249 * 330.01943 * 1 2 3 34 34 H 1.08002 * 125.98925 * 359.96367 * 3 2 1 35 35 H 1.08004 * 125.64460 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47033 * 24.98309 * 7 6 5 37 37 H 1.09000 * 109.46344 * 144.98014 * 7 6 5 38 38 H 1.09000 * 109.58960 * 353.41590 * 11 10 8 39 39 H 1.08999 * 109.58770 * 113.84969 * 11 10 8 40 40 H 1.08998 * 109.56529 * 185.55458 * 12 11 10 41 41 H 1.08995 * 109.38833 * 65.51467 * 12 11 10 42 42 H 1.08993 * 109.46317 * 301.22015 * 13 12 11 43 43 H 1.09007 * 109.44640 * 181.25078 * 13 12 11 44 44 H 1.09006 * 109.49068 * 178.68052 * 14 13 12 45 45 H 1.08997 * 109.52842 * 58.60481 * 14 13 12 46 46 H 1.09000 * 110.72116 * 336.75039 * 19 17 15 47 47 H 1.09004 * 110.72416 * 100.02216 * 19 17 15 48 48 H 1.09004 * 111.00448 * 277.42672 * 20 19 17 49 49 H 1.09000 * 111.04117 * 153.59126 * 20 19 17 50 50 H 1.08996 * 110.37294 * 204.15469 * 21 20 19 51 51 H 1.09001 * 110.45595 * 81.87426 * 21 20 19 52 52 H 0.96997 * 120.00583 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5812 0.6541 0.0067 5 6 3.5967 -0.6509 0.0051 6 7 2.3229 -1.0991 -0.0022 7 6 1.8943 -2.5000 -0.0057 8 6 1.6361 -2.9428 -1.4228 9 8 1.7949 -2.1648 -2.3397 10 7 1.2287 -4.2032 -1.6714 11 6 1.1702 -5.1977 -0.5915 12 6 1.9666 -6.4327 -1.0088 13 6 1.4500 -6.9382 -2.3579 14 6 1.6457 -5.8536 -3.4197 15 6 0.8404 -4.6105 -3.0286 16 1 -0.2248 -4.8408 -3.0504 17 6 1.1399 -3.4757 -4.0102 18 1 2.1414 -3.0848 -3.8303 19 6 0.0966 -2.3505 -3.8458 20 6 -0.1479 -1.8871 -5.3061 21 6 -0.0338 -3.2242 -6.0800 22 7 1.0362 -3.9688 -5.3914 23 6 1.8065 -4.9555 -5.9464 24 1 2.7409 -5.2361 -5.4832 25 6 1.3863 -5.5951 -7.1045 26 7 0.2478 -5.2529 -7.6693 27 14 2.4367 -6.9417 -7.8614 28 1 3.6592 -7.1358 -7.0411 29 1 1.6626 -8.2082 -7.9043 30 1 2.8237 -6.5511 -9.2409 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3634 -0.8898 0.5143 33 1 -0.3634 0.8901 0.5135 34 1 1.9865 2.1117 -0.0006 35 1 4.4819 -1.2697 0.0090 36 1 2.6764 -3.1203 0.4320 37 1 0.9801 -2.6016 0.5790 38 1 1.6012 -4.7766 0.3169 39 1 0.1331 -5.4794 -0.4098 40 1 1.8484 -7.2141 -0.2581 41 1 3.0207 -6.1704 -1.0980 42 1 0.3899 -7.1775 -2.2743 43 1 2.0026 -7.8325 -2.6461 44 1 1.2991 -6.2229 -4.3850 45 1 2.7027 -5.5961 -3.4870 46 1 -0.8221 -2.7378 -3.4052 47 1 0.4998 -1.5354 -3.2448 48 1 0.6205 -1.1835 -5.6266 49 1 -1.1420 -1.4544 -5.4182 50 1 0.2405 -3.0393 -7.1185 51 1 -0.9728 -3.7753 -6.0287 52 1 -0.0457 -5.6996 -8.4788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025253662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:04 Heat of formation + Delta-G solvation = 74.616835 kcal Electronic energy + Delta-G solvation = -33302.297160 eV Core-core repulsion = 29304.404671 eV Total energy + Delta-G solvation = -3997.892489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.05586 -41.71144 -38.88997 -38.17634 -35.12798 -34.52250 -33.76266 -32.86209 -32.65024 -31.03448 -29.10746 -28.29803 -27.25092 -26.61521 -25.66191 -23.86038 -22.63023 -22.26428 -21.78110 -21.07305 -20.86500 -20.05885 -18.98594 -18.06407 -17.68137 -17.08783 -16.77386 -16.59100 -16.04940 -15.74190 -15.64905 -15.32746 -15.30459 -14.77678 -14.56489 -14.39435 -14.15468 -13.99003 -13.94800 -13.82943 -13.64026 -13.60443 -13.48058 -13.35934 -13.11400 -12.95618 -12.74994 -12.72863 -12.40276 -12.11293 -11.96571 -11.90869 -11.75055 -11.47310 -11.38856 -11.22385 -10.92569 -10.88113 -10.80867 -10.52268 -9.94708 -9.37009 -9.15233 -8.63714 -7.83759 -5.18937 1.05453 1.41839 1.43725 1.52750 1.59806 1.76231 2.18116 2.29550 2.50261 3.30532 3.49110 3.75594 3.79991 3.87109 3.93026 3.96949 4.01021 4.08955 4.12288 4.14268 4.24588 4.30947 4.34053 4.41641 4.48347 4.57071 4.60410 4.72446 4.79645 4.79728 4.87249 4.90177 4.92566 4.98595 5.07508 5.09494 5.13373 5.17218 5.28687 5.36494 5.44638 5.49670 5.53085 5.56716 5.62919 5.73104 5.76624 5.88612 5.90999 6.24480 6.30479 6.57565 7.12410 7.18754 7.30179 7.82521 8.53569 9.28294 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013348 B = 0.003902 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.171566 B = 7174.480467 C = 8180.206136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.012 4.012 3 C -0.063 4.063 4 N -0.534 5.534 5 C 0.180 3.820 6 N -0.440 5.440 7 C 0.091 3.909 8 C 0.474 3.526 9 O -0.536 6.536 10 N -0.598 5.598 11 C 0.101 3.899 12 C -0.127 4.127 13 C -0.121 4.121 14 C -0.121 4.121 15 C 0.154 3.846 16 H 0.049 0.951 17 C 0.169 3.831 18 H 0.043 0.957 19 C -0.100 4.100 20 C -0.141 4.141 21 C 0.183 3.817 22 N -0.615 5.615 23 C -0.212 4.212 24 H 0.073 0.927 25 C -0.060 4.060 26 N -0.947 5.947 27 Si 0.960 3.040 28 H -0.266 1.266 29 H -0.289 1.289 30 H -0.298 1.298 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.174 0.826 35 H 0.224 0.776 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.035 0.965 46 H 0.050 0.950 47 H 0.099 0.901 48 H 0.047 0.953 49 H 0.075 0.925 50 H 0.021 0.979 51 H 0.000 1.000 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 0.950 23.881 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C -0.209 4.209 4 N -0.252 5.252 5 C -0.102 4.102 6 N -0.123 5.123 7 C -0.035 4.035 8 C 0.262 3.738 9 O -0.413 6.413 10 N -0.333 5.333 11 C -0.021 4.021 12 C -0.165 4.165 13 C -0.158 4.158 14 C -0.159 4.159 15 C 0.049 3.951 16 H 0.067 0.933 17 C 0.063 3.937 18 H 0.061 0.939 19 C -0.137 4.137 20 C -0.179 4.179 21 C 0.058 3.942 22 N -0.341 5.341 23 C -0.341 4.341 24 H 0.091 0.909 25 C -0.253 4.253 26 N -0.595 5.595 27 Si 0.789 3.211 28 H -0.191 1.191 29 H -0.216 1.216 30 H -0.225 1.225 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.191 0.809 35 H 0.241 0.759 36 H 0.174 0.826 37 H 0.167 0.833 38 H 0.139 0.861 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.116 0.884 48 H 0.066 0.934 49 H 0.094 0.906 50 H 0.039 0.961 51 H 0.018 0.982 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.306 1.603 23.252 23.310 hybrid contribution -0.203 -1.331 -1.701 2.170 sum -0.509 0.272 21.551 21.559 Atomic orbital electron populations 1.20288 0.85485 1.04675 1.02709 1.21598 0.95665 0.86569 1.08837 1.22296 0.88537 0.99460 1.10596 1.70186 1.23594 1.10386 1.21046 1.25314 0.88189 0.91609 1.05131 1.45018 1.06958 1.06308 1.54042 1.22019 1.06837 0.80138 0.94479 1.21280 0.78544 0.82045 0.91948 1.90776 1.50529 1.54654 1.45384 1.48262 1.65275 1.10118 1.09606 1.22031 1.02151 0.88623 0.89259 1.21826 0.99728 0.98116 0.96847 1.21585 1.01266 0.97549 0.95433 1.22072 0.98437 0.95291 1.00138 1.21634 0.96658 0.95916 0.80891 0.93316 1.21528 0.98091 0.91092 0.82940 0.93913 1.22890 0.96464 0.98861 0.95519 1.22905 1.00416 0.97301 0.97302 1.21072 0.90100 0.88801 0.94243 1.44991 1.39813 1.41571 1.07689 1.19166 0.99468 1.09092 1.06367 0.90921 1.25609 0.98062 1.01596 1.00050 1.70140 1.23068 1.44850 1.21489 0.85269 0.78427 0.79481 0.77884 1.19071 1.21571 1.22538 0.91942 0.90126 0.88358 0.80888 0.75936 0.82567 0.83324 0.86117 0.89791 0.87775 0.92133 0.92022 0.92164 0.91021 0.94624 0.93170 0.88367 0.93439 0.90629 0.96063 0.98214 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.17 71.24 0.72 -0.43 16 2 C -0.01 -0.26 6.95 40.95 0.28 0.02 16 3 C -0.06 -1.64 11.79 83.52 0.98 -0.66 16 4 N -0.53 -15.72 11.25 -200.31 -2.25 -17.97 16 5 C 0.18 4.24 12.56 180.26 2.26 6.51 16 6 N -0.44 -9.02 2.24 -518.62 -1.16 -10.18 16 7 C 0.09 1.21 4.85 85.63 0.42 1.62 16 8 C 0.47 11.34 7.37 87.66 0.65 11.98 16 9 O -0.54 -18.36 9.11 -3.05 -0.03 -18.39 16 10 N -0.60 -14.08 2.98 -795.85 -2.37 -16.45 16 11 C 0.10 1.31 6.29 86.22 0.54 1.85 16 12 C -0.13 -1.99 6.07 30.53 0.19 -1.80 16 13 C -0.12 -3.03 5.89 30.62 0.18 -2.85 16 14 C -0.12 -4.38 3.81 30.67 0.12 -4.26 16 15 C 0.15 5.37 2.66 44.98 0.12 5.49 16 16 H 0.05 1.83 7.83 -2.39 -0.02 1.81 16 17 C 0.17 7.27 2.30 45.34 0.10 7.38 16 18 H 0.04 2.09 5.97 -4.02 -0.02 2.07 16 19 C -0.10 -3.90 5.33 31.78 0.17 -3.73 16 20 C -0.14 -5.97 7.08 31.98 0.23 -5.75 16 21 C 0.18 9.60 5.37 86.85 0.47 10.06 16 22 N -0.62 -32.12 3.10 -668.26 -2.07 -34.19 16 23 C -0.21 -11.69 6.79 84.03 0.57 -11.12 16 24 H 0.07 3.96 6.45 -2.91 -0.02 3.94 16 25 C -0.06 -3.39 5.46 84.86 0.46 -2.93 16 26 N -0.95 -57.35 10.73 21.65 0.23 -57.12 16 27 Si 0.96 45.82 29.55 68.60 2.03 47.85 16 28 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 29 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 30 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 0.91 7.33 -2.38 -0.02 0.89 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.17 3.87 8.06 -2.91 -0.02 3.84 16 35 H 0.22 3.75 8.06 -2.91 -0.02 3.72 16 36 H 0.16 0.92 7.41 -2.39 -0.02 0.91 16 37 H 0.15 1.00 7.35 -2.39 -0.02 0.99 16 38 H 0.12 0.51 5.97 -2.39 -0.01 0.50 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.07 3.29 5.55 -2.38 -0.01 3.28 16 45 H 0.03 1.39 7.42 -2.39 -0.02 1.37 16 46 H 0.05 1.83 7.65 -2.39 -0.02 1.82 16 47 H 0.10 3.80 5.41 -34.34 -0.19 3.62 16 48 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 49 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 50 H 0.02 1.24 7.20 -2.39 -0.02 1.22 16 51 H 0.00 -0.01 7.97 -2.39 -0.02 -0.03 16 52 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -79.88 388.24 3.57 -76.32 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.73 Total: 18.74 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 8.46 Total: 11.39 kcal Atomic # 7 Polarization: -128.28 SS G_CDS: -7.62 Total: -135.90 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.03 Total: -18.39 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -79.88 3.57 -76.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025253662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.932 kcal (2) G-P(sol) polarization free energy of solvation -79.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds