Wall clock time and date at job start Wed Apr 1 2020 03:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30452 * 125.98869 * 2 1 4 4 N 1.39931 * 108.89617 * 180.02562 * 3 2 1 5 5 H 0.97004 * 125.74732 * 180.26225 * 4 3 2 6 6 C 1.34252 * 108.49489 * 359.97438 * 4 3 2 7 7 C 1.50698 * 126.29520 * 179.97438 * 6 4 3 8 8 C 1.38050 * 107.41683 * 0.02562 * 6 4 3 9 9 C 1.47430 * 126.41202 * 179.97438 * 8 6 4 10 10 O 1.21602 * 119.99872 * 81.26436 * 9 8 6 11 11 N 1.34780 * 119.99820 * 261.25158 * 9 8 6 12 12 C 1.46920 * 120.63257 * 4.76928 * 11 9 8 13 13 C 1.52758 * 109.00911 * 233.57940 * 12 11 9 14 14 C 1.53041 * 109.38302 * 305.58731 * 13 12 11 15 15 C 1.53046 * 109.53966 * 61.23681 * 14 13 12 16 16 C 1.46925 * 120.62913 * 185.04054 * 11 9 8 17 17 H 1.09004 * 109.58709 * 246.16474 * 16 11 9 18 18 C 1.53003 * 109.58890 * 6.58387 * 16 11 9 19 19 H 1.09000 * 109.87193 * 312.13048 * 18 16 11 20 20 C 1.54315 * 109.88692 * 190.95303 * 18 16 11 21 21 C 1.55149 * 102.94579 * 218.39297 * 20 18 16 22 22 C 1.54912 * 101.58200 * 35.49846 * 21 20 18 23 23 N 1.47022 * 109.87923 * 73.14194 * 18 16 11 24 24 C 1.36939 * 125.65226 * 298.32533 * 23 18 16 25 25 H 1.08002 * 119.99982 * 41.71776 * 24 23 18 26 26 C 1.38810 * 120.00053 * 221.71647 * 24 23 18 27 27 N 1.31620 * 120.00285 * 210.36670 * 26 24 23 28 28 Si 1.86804 * 119.99989 * 30.36789 * 26 24 23 29 29 H 1.48495 * 109.47038 * 96.05067 * 28 26 24 30 30 H 1.48501 * 109.47091 * 216.05357 * 28 26 24 31 31 H 1.48503 * 109.47139 * 336.05201 * 28 26 24 32 32 H 1.08997 * 109.47490 * 267.07619 * 1 2 3 33 33 H 1.09003 * 109.47283 * 27.08159 * 1 2 3 34 34 H 1.09002 * 109.47493 * 147.08026 * 1 2 3 35 35 H 1.09004 * 109.47000 * 90.02472 * 7 6 4 36 36 H 1.08995 * 109.47627 * 210.02870 * 7 6 4 37 37 H 1.08998 * 109.46846 * 330.03081 * 7 6 4 38 38 H 1.09009 * 109.58686 * 353.41230 * 12 11 9 39 39 H 1.08994 * 109.59039 * 113.83277 * 12 11 9 40 40 H 1.08998 * 109.57195 * 185.54888 * 13 12 11 41 41 H 1.09001 * 109.38826 * 65.50793 * 13 12 11 42 42 H 1.09000 * 109.45643 * 301.21920 * 14 13 12 43 43 H 1.09000 * 109.45350 * 181.25063 * 14 13 12 44 44 H 1.08996 * 109.49735 * 178.68797 * 15 14 13 45 45 H 1.08999 * 109.51886 * 58.60416 * 15 14 13 46 46 H 1.09010 * 110.71825 * 336.75457 * 20 18 16 47 47 H 1.08999 * 110.72136 * 100.02320 * 20 18 16 48 48 H 1.09002 * 111.00704 * 277.42875 * 21 20 18 49 49 H 1.08996 * 111.00701 * 153.57292 * 21 20 18 50 50 H 1.09001 * 110.36615 * 204.15123 * 22 21 20 51 51 H 1.09001 * 110.45466 * 81.88134 * 22 21 20 52 52 H 0.96990 * 120.00203 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6443 -0.0006 5 1 4.3841 1.2302 0.0029 6 6 3.6439 -0.6979 -0.0004 7 6 4.8800 -1.5599 -0.0014 8 6 2.3372 -1.1432 -0.0003 9 6 1.8916 -2.5485 -0.0006 10 8 1.8605 -3.1767 1.0402 11 7 1.5185 -3.1369 -1.1543 12 6 1.6486 -2.4260 -2.4334 13 6 0.2990 -2.4380 -3.1489 14 6 -0.1942 -3.8809 -3.2787 15 6 -0.3789 -4.4861 -1.8852 16 6 0.9683 -4.4993 -1.1561 17 1 1.6560 -5.1704 -1.6709 18 6 0.7672 -4.9731 0.2847 19 1 1.6645 -4.7715 0.8698 20 6 0.4542 -6.4841 0.3015 21 6 -0.6125 -6.6058 1.4216 22 6 -1.4029 -5.2855 1.2430 23 7 -0.3849 -4.2821 0.8820 24 6 -0.4940 -2.9304 1.0723 25 1 -0.1609 -2.2483 0.3041 26 6 -1.0329 -2.4369 2.2525 27 7 -1.6840 -1.2930 2.2510 28 14 -0.8339 -3.3962 3.8430 29 1 0.3321 -2.8691 4.5964 30 1 -2.0616 -3.2508 4.6657 31 1 -0.6141 -4.8314 3.5313 32 1 -0.3634 -0.0524 1.0263 33 1 -0.3634 0.9150 -0.4679 34 1 -0.3634 -0.8626 -0.5585 35 1 5.1787 -1.7680 1.0261 36 1 4.6686 -2.4976 -0.5153 37 1 5.6867 -1.0376 -0.5156 38 1 1.9539 -1.3958 -2.2496 39 1 2.3927 -2.9244 -3.0545 40 1 0.4078 -2.0001 -4.1411 41 1 -0.4215 -1.8579 -2.5722 42 1 0.5381 -4.4663 -3.8347 43 1 -1.1466 -3.8928 -3.8088 44 1 -0.7523 -5.5059 -1.9780 45 1 -1.0927 -3.8872 -1.3197 46 1 0.0452 -6.8039 -0.6569 47 1 1.3450 -7.0597 0.5531 48 1 -0.1436 -6.6504 2.4046 49 1 -1.2547 -7.4709 1.2572 50 1 -1.8946 -5.0086 2.1756 51 1 -2.1368 -5.3861 0.4434 52 1 -2.0602 -0.9480 3.0758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025279137.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:10 Heat of formation + Delta-G solvation = 109.089037 kcal Electronic energy + Delta-G solvation = -34992.898422 eV Core-core repulsion = 30996.500760 eV Total energy + Delta-G solvation = -3996.397662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.07889 -39.77995 -36.89343 -36.44176 -33.15579 -32.34696 -32.21058 -31.45535 -30.63165 -29.62532 -27.70381 -27.11958 -26.83170 -24.61358 -23.83156 -22.81272 -21.66281 -20.40027 -19.88247 -19.45494 -19.23895 -18.07694 -17.23380 -16.45178 -16.07558 -15.31743 -15.22539 -14.64866 -14.31958 -14.23092 -13.85163 -13.58715 -13.40477 -13.25266 -13.02362 -12.89151 -12.84703 -12.65175 -12.49766 -12.25484 -12.03603 -11.91083 -11.70731 -11.57388 -11.33189 -11.04859 -10.95761 -10.91147 -10.72711 -10.51184 -10.39403 -10.27942 -10.19953 -10.08855 -10.04032 -9.74393 -9.57938 -9.18452 -8.76639 -8.24543 -8.11179 -7.78811 -7.59263 -6.20916 -5.78095 -3.06901 2.11816 3.06250 3.14367 3.59323 3.60219 3.72733 3.79985 3.87615 4.84021 4.85237 5.08502 5.12589 5.20302 5.29529 5.30878 5.35377 5.47520 5.52519 5.61940 5.68579 5.74387 5.78006 5.81075 5.86109 5.88902 5.91887 5.97466 6.05828 6.15346 6.20483 6.26800 6.29133 6.38617 6.43685 6.50680 6.54974 6.58413 6.62853 6.66647 6.69822 6.81184 6.95816 6.98431 7.10893 7.18661 7.29763 7.52648 7.64608 7.67445 8.13503 8.28614 8.32390 8.63964 9.19582 9.33308 9.97241 10.63408 11.34711 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.006799 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.538223 B = 4117.180616 C = 5213.064701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.137 3.863 3 N -0.314 5.314 4 N -0.476 5.476 5 H 0.433 0.567 6 C 0.104 3.896 7 C -0.089 4.089 8 C -0.259 4.259 9 C 0.603 3.397 10 O -0.475 6.475 11 N -0.603 5.603 12 C 0.118 3.882 13 C -0.134 4.134 14 C -0.116 4.116 15 C -0.126 4.126 16 C 0.149 3.851 17 H 0.050 0.950 18 C 0.118 3.882 19 H 0.110 0.890 20 C -0.131 4.131 21 C -0.134 4.134 22 C 0.132 3.868 23 N -0.585 5.585 24 C -0.216 4.216 25 H 0.098 0.902 26 C 0.037 3.963 27 N -0.899 5.899 28 Si 0.858 3.142 29 H -0.299 1.299 30 H -0.308 1.308 31 H -0.259 1.259 32 H 0.133 0.867 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.095 0.905 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.040 0.960 51 H 0.020 0.980 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.624 -3.214 -11.134 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.030 4.030 3 N -0.137 5.137 4 N -0.182 5.182 5 H 0.276 0.724 6 C -0.027 4.027 7 C -0.148 4.148 8 C -0.274 4.274 9 C 0.390 3.610 10 O -0.347 6.347 11 N -0.338 5.338 12 C -0.006 4.006 13 C -0.172 4.172 14 C -0.153 4.153 15 C -0.164 4.164 16 C 0.044 3.956 17 H 0.068 0.932 18 C 0.013 3.987 19 H 0.126 0.874 20 C -0.170 4.170 21 C -0.173 4.173 22 C 0.007 3.993 23 N -0.310 5.310 24 C -0.343 4.343 25 H 0.115 0.885 26 C -0.161 4.161 27 N -0.542 5.542 28 Si 0.688 3.312 29 H -0.227 1.227 30 H -0.236 1.236 31 H -0.184 1.184 32 H 0.150 0.850 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.114 0.886 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.058 0.942 51 H 0.038 0.962 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.523 -2.090 -10.438 14.283 hybrid contribution 0.455 -0.859 1.015 1.405 sum 9.977 -2.949 -9.424 14.037 Atomic orbital electron populations 1.20898 0.84211 1.01428 1.08340 1.22751 0.97781 0.88412 0.94055 1.77085 0.85804 1.22532 1.28258 1.45889 1.07639 1.04419 1.60275 0.72429 1.21238 0.96103 0.85084 1.00307 1.20426 0.92218 0.98511 1.03634 1.20158 0.91515 0.95414 1.20272 1.16896 0.76826 0.84308 0.82972 1.90668 1.50559 1.61795 1.31716 1.47784 1.64525 1.15713 1.05734 1.21375 0.96608 0.97371 0.85260 1.21828 0.97893 0.97678 0.99846 1.21505 1.00152 0.95735 0.97930 1.21928 0.98999 1.00890 0.94621 1.21773 0.92955 0.81442 0.99440 0.93176 1.22332 0.96866 0.88233 0.91293 0.87374 1.22701 0.98133 0.98040 0.98137 1.22741 0.97906 0.98001 0.98606 1.21773 0.91977 0.88160 0.97438 1.44594 1.11669 1.02655 1.72097 1.18880 1.36837 0.79821 0.98768 0.88475 1.25473 0.98407 0.95076 0.97186 1.69762 1.35326 1.22154 1.26934 0.87120 0.76058 0.82106 0.85881 1.22703 1.23639 1.18399 0.84976 0.93022 0.89703 0.89918 0.89785 0.91245 0.90499 0.92932 0.92030 0.90949 0.93101 0.92641 0.92454 0.88643 0.92412 0.92594 0.92052 0.92632 0.94203 0.96202 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.94 9.02 36.00 0.32 -1.61 16 2 C 0.14 2.77 6.99 -82.02 -0.57 2.19 16 3 N -0.31 -5.87 12.63 33.89 0.43 -5.44 16 4 N -0.48 -7.02 7.29 33.86 0.25 -6.77 16 5 H 0.43 4.59 8.96 -182.72 -1.64 2.95 16 6 C 0.10 1.60 7.29 -81.60 -0.60 1.01 16 7 C -0.09 -1.01 10.25 36.00 0.37 -0.64 16 8 C -0.26 -4.94 3.95 -105.07 -0.41 -5.35 16 9 C 0.60 12.15 4.16 -12.52 -0.05 12.10 16 10 O -0.47 -11.31 10.58 5.28 0.06 -11.26 16 11 N -0.60 -10.45 2.58 -166.74 -0.43 -10.88 16 12 C 0.12 1.69 6.32 -3.94 -0.02 1.67 16 13 C -0.13 -1.84 6.06 -26.83 -0.16 -2.01 16 14 C -0.12 -1.56 5.89 -26.69 -0.16 -1.72 16 15 C -0.13 -2.05 4.95 -26.61 -0.13 -2.19 16 16 C 0.15 2.54 2.55 -67.60 -0.17 2.37 16 17 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 18 C 0.12 2.34 2.33 -66.96 -0.16 2.19 16 19 H 0.11 2.46 5.08 -56.20 -0.29 2.17 16 20 C -0.13 -2.20 6.33 -24.91 -0.16 -2.36 16 21 C -0.13 -2.44 6.97 -24.59 -0.17 -2.61 16 22 C 0.13 2.84 6.00 -2.53 -0.02 2.82 16 23 N -0.59 -13.37 1.28 -162.57 -0.21 -13.58 16 24 C -0.22 -5.53 6.10 -15.06 -0.09 -5.63 16 25 H 0.10 2.45 1.86 -52.49 -0.10 2.35 16 26 C 0.04 1.04 5.24 -17.43 -0.09 0.95 16 27 N -0.90 -25.61 11.70 55.49 0.65 -24.96 16 28 Si 0.86 23.05 26.59 -169.99 -4.52 18.54 16 29 H -0.30 -8.53 7.11 56.52 0.40 -8.13 16 30 H -0.31 -8.43 7.11 56.52 0.40 -8.03 16 31 H -0.26 -6.71 4.99 56.52 0.28 -6.42 16 32 H 0.13 3.34 5.59 -51.93 -0.29 3.05 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.88 5.59 -51.93 -0.29 1.59 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.97 7.96 -51.93 -0.41 0.55 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 1.16 6.12 -51.92 -0.32 0.85 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.17 7.57 -51.93 -0.39 0.77 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.88 6.94 -51.93 -0.36 0.52 16 45 H 0.10 1.93 6.58 -51.93 -0.34 1.59 16 46 H 0.06 0.87 6.60 -51.92 -0.34 0.53 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.06 1.20 7.48 -51.93 -0.39 0.81 16 49 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.04 0.94 4.95 -51.93 -0.26 0.69 16 51 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -31.59 371.36 -9.77 -41.36 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -9.32 Total: 6.21 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -2.27 Total: 1.18 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.69 Total: -61.63 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.06 Total: -11.26 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.52 Total: 18.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.59 -9.77 -41.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025279137.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.450 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds