Wall clock time and date at job start Wed Apr 1 2020 03:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30452 * 125.98869 * 2 1 4 4 N 1.39931 * 108.89617 * 180.02562 * 3 2 1 5 5 H 0.97004 * 125.74732 * 180.26225 * 4 3 2 6 6 C 1.34252 * 108.49489 * 359.97438 * 4 3 2 7 7 C 1.50698 * 126.29520 * 179.97438 * 6 4 3 8 8 C 1.38050 * 107.41683 * 0.02562 * 6 4 3 9 9 C 1.47430 * 126.41202 * 179.97438 * 8 6 4 10 10 O 1.21602 * 119.99872 * 81.26436 * 9 8 6 11 11 N 1.34780 * 119.99820 * 261.25158 * 9 8 6 12 12 C 1.46920 * 120.63257 * 4.76928 * 11 9 8 13 13 C 1.52758 * 109.00911 * 233.57940 * 12 11 9 14 14 C 1.53041 * 109.38302 * 305.58731 * 13 12 11 15 15 C 1.53046 * 109.53966 * 61.23681 * 14 13 12 16 16 C 1.46925 * 120.62913 * 185.04054 * 11 9 8 17 17 H 1.09004 * 109.58709 * 246.16474 * 16 11 9 18 18 C 1.53003 * 109.58890 * 6.58387 * 16 11 9 19 19 H 1.09000 * 109.87193 * 312.13048 * 18 16 11 20 20 C 1.54315 * 109.88692 * 190.95303 * 18 16 11 21 21 C 1.55149 * 102.94579 * 218.39297 * 20 18 16 22 22 C 1.54912 * 101.58200 * 35.49846 * 21 20 18 23 23 N 1.47022 * 109.87923 * 73.14194 * 18 16 11 24 24 C 1.36939 * 125.65226 * 298.32533 * 23 18 16 25 25 H 1.08002 * 119.99982 * 41.71776 * 24 23 18 26 26 C 1.38810 * 120.00053 * 221.71647 * 24 23 18 27 27 N 1.31620 * 120.00285 * 210.36670 * 26 24 23 28 28 Si 1.86804 * 119.99989 * 30.36789 * 26 24 23 29 29 H 1.48495 * 109.47038 * 96.05067 * 28 26 24 30 30 H 1.48501 * 109.47091 * 216.05357 * 28 26 24 31 31 H 1.48503 * 109.47139 * 336.05201 * 28 26 24 32 32 H 1.08997 * 109.47490 * 267.07619 * 1 2 3 33 33 H 1.09003 * 109.47283 * 27.08159 * 1 2 3 34 34 H 1.09002 * 109.47493 * 147.08026 * 1 2 3 35 35 H 1.09004 * 109.47000 * 90.02472 * 7 6 4 36 36 H 1.08995 * 109.47627 * 210.02870 * 7 6 4 37 37 H 1.08998 * 109.46846 * 330.03081 * 7 6 4 38 38 H 1.09009 * 109.58686 * 353.41230 * 12 11 9 39 39 H 1.08994 * 109.59039 * 113.83277 * 12 11 9 40 40 H 1.08998 * 109.57195 * 185.54888 * 13 12 11 41 41 H 1.09001 * 109.38826 * 65.50793 * 13 12 11 42 42 H 1.09000 * 109.45643 * 301.21920 * 14 13 12 43 43 H 1.09000 * 109.45350 * 181.25063 * 14 13 12 44 44 H 1.08996 * 109.49735 * 178.68797 * 15 14 13 45 45 H 1.08999 * 109.51886 * 58.60416 * 15 14 13 46 46 H 1.09010 * 110.71825 * 336.75457 * 20 18 16 47 47 H 1.08999 * 110.72136 * 100.02320 * 20 18 16 48 48 H 1.09002 * 111.00704 * 277.42875 * 21 20 18 49 49 H 1.08996 * 111.00701 * 153.57292 * 21 20 18 50 50 H 1.09001 * 110.36615 * 204.15123 * 22 21 20 51 51 H 1.09001 * 110.45466 * 81.88134 * 22 21 20 52 52 H 0.96990 * 120.00203 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6443 -0.0006 5 1 4.3841 1.2302 0.0029 6 6 3.6439 -0.6979 -0.0004 7 6 4.8800 -1.5599 -0.0014 8 6 2.3372 -1.1432 -0.0003 9 6 1.8916 -2.5485 -0.0006 10 8 1.8605 -3.1767 1.0402 11 7 1.5185 -3.1369 -1.1543 12 6 1.6486 -2.4260 -2.4334 13 6 0.2990 -2.4380 -3.1489 14 6 -0.1942 -3.8809 -3.2787 15 6 -0.3789 -4.4861 -1.8852 16 6 0.9683 -4.4993 -1.1561 17 1 1.6560 -5.1704 -1.6709 18 6 0.7672 -4.9731 0.2847 19 1 1.6645 -4.7715 0.8698 20 6 0.4542 -6.4841 0.3015 21 6 -0.6125 -6.6058 1.4216 22 6 -1.4029 -5.2855 1.2430 23 7 -0.3849 -4.2821 0.8820 24 6 -0.4940 -2.9304 1.0723 25 1 -0.1609 -2.2483 0.3041 26 6 -1.0329 -2.4369 2.2525 27 7 -1.6840 -1.2930 2.2510 28 14 -0.8339 -3.3962 3.8430 29 1 0.3321 -2.8691 4.5964 30 1 -2.0616 -3.2508 4.6657 31 1 -0.6141 -4.8314 3.5313 32 1 -0.3634 -0.0524 1.0263 33 1 -0.3634 0.9150 -0.4679 34 1 -0.3634 -0.8626 -0.5585 35 1 5.1787 -1.7680 1.0261 36 1 4.6686 -2.4976 -0.5153 37 1 5.6867 -1.0376 -0.5156 38 1 1.9539 -1.3958 -2.2496 39 1 2.3927 -2.9244 -3.0545 40 1 0.4078 -2.0001 -4.1411 41 1 -0.4215 -1.8579 -2.5722 42 1 0.5381 -4.4663 -3.8347 43 1 -1.1466 -3.8928 -3.8088 44 1 -0.7523 -5.5059 -1.9780 45 1 -1.0927 -3.8872 -1.3197 46 1 0.0452 -6.8039 -0.6569 47 1 1.3450 -7.0597 0.5531 48 1 -0.1436 -6.6504 2.4046 49 1 -1.2547 -7.4709 1.2572 50 1 -1.8946 -5.0086 2.1756 51 1 -2.1368 -5.3861 0.4434 52 1 -2.0602 -0.9480 3.0758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025279137.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:09 Heat of formation + Delta-G solvation = 88.707065 kcal Electronic energy + Delta-G solvation = -34993.782251 eV Core-core repulsion = 30996.500760 eV Total energy + Delta-G solvation = -3997.281491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.46832 -41.22603 -38.47914 -37.82432 -34.73447 -34.06947 -33.56756 -32.80343 -31.93461 -31.43628 -29.13005 -28.62592 -28.12040 -26.17044 -25.43571 -24.16617 -23.02816 -21.99694 -21.17669 -20.90613 -20.76335 -19.46230 -18.90134 -17.97170 -17.71616 -16.86144 -16.59800 -16.17762 -15.96357 -15.56453 -15.11808 -15.06951 -14.78215 -14.68201 -14.45232 -14.43407 -14.28569 -14.04429 -13.83564 -13.74137 -13.58123 -13.29776 -13.22850 -13.11870 -12.86654 -12.82160 -12.68941 -12.44548 -12.24888 -12.11368 -11.88266 -11.69412 -11.61565 -11.50394 -11.39782 -11.36383 -11.10590 -11.07597 -10.32486 -10.08899 -9.68727 -9.21354 -9.09331 -8.06880 -7.90467 -5.11765 0.82139 1.35891 1.46198 1.56899 1.57018 1.90477 2.12548 2.52288 2.69247 3.36095 3.66540 3.73728 3.76651 4.01928 4.07973 4.13503 4.21097 4.21930 4.31307 4.34488 4.40064 4.51937 4.54600 4.60190 4.65417 4.66677 4.77503 4.86286 4.92615 4.93304 4.96180 5.03113 5.05982 5.08851 5.14734 5.15064 5.17793 5.22500 5.29971 5.32995 5.39301 5.41196 5.46161 5.54625 5.77133 5.80389 5.91509 6.14818 6.33204 6.44314 6.62855 6.73595 6.89512 7.28208 7.83261 7.93831 8.64408 9.24683 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.006799 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.538223 B = 4117.180616 C = 5213.064701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.115 3.885 3 N -0.331 5.331 4 N -0.454 5.454 5 H 0.453 0.547 6 C 0.128 3.872 7 C -0.087 4.087 8 C -0.296 4.296 9 C 0.604 3.396 10 O -0.526 6.526 11 N -0.600 5.600 12 C 0.116 3.884 13 C -0.131 4.131 14 C -0.108 4.108 15 C -0.119 4.119 16 C 0.148 3.852 17 H 0.084 0.916 18 C 0.112 3.888 19 H 0.083 0.917 20 C -0.119 4.119 21 C -0.127 4.127 22 C 0.123 3.877 23 N -0.599 5.599 24 C -0.172 4.172 25 H 0.104 0.896 26 C -0.015 4.015 27 N -0.927 5.927 28 Si 0.881 3.119 29 H -0.330 1.330 30 H -0.321 1.321 31 H -0.246 1.246 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.048 0.952 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.042 0.958 49 H 0.089 0.911 50 H 0.010 0.990 51 H 0.029 0.971 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.443 -5.281 -14.857 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.051 4.051 3 N -0.155 5.155 4 N -0.162 5.162 5 H 0.301 0.699 6 C -0.006 4.006 7 C -0.145 4.145 8 C -0.311 4.311 9 C 0.392 3.608 10 O -0.402 6.402 11 N -0.333 5.333 12 C -0.006 4.006 13 C -0.170 4.170 14 C -0.146 4.146 15 C -0.158 4.158 16 C 0.044 3.956 17 H 0.102 0.898 18 C 0.007 3.993 19 H 0.100 0.900 20 C -0.157 4.157 21 C -0.165 4.165 22 C -0.001 4.001 23 N -0.324 5.324 24 C -0.301 4.301 25 H 0.120 0.880 26 C -0.209 4.209 27 N -0.575 5.575 28 Si 0.715 3.285 29 H -0.261 1.261 30 H -0.250 1.250 31 H -0.170 1.170 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.061 0.939 49 H 0.108 0.892 50 H 0.028 0.972 51 H 0.047 0.953 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.357 -4.185 -14.221 19.298 hybrid contribution -0.277 -0.214 2.053 2.083 sum 12.080 -4.399 -12.167 17.700 Atomic orbital electron populations 1.20491 0.85989 1.01210 1.05596 1.22500 0.97144 0.89590 0.95821 1.76974 0.87445 1.22390 1.28659 1.45863 1.07081 1.04806 1.58464 0.69907 1.21786 0.96390 0.85332 0.97045 1.20601 0.91242 0.98171 1.04465 1.20240 0.93039 0.94718 1.23108 1.17124 0.76124 0.84516 0.83031 1.90671 1.53089 1.63017 1.33454 1.47885 1.63212 1.15994 1.06203 1.21579 0.97839 0.97089 0.84126 1.21809 0.96572 0.97888 1.00695 1.21465 1.01530 0.95318 0.96261 1.21805 0.97171 1.01109 0.95678 1.21783 0.94234 0.81769 0.97810 0.89845 1.22333 0.94367 0.90250 0.92364 0.90027 1.22668 0.98568 0.95701 0.98774 1.22683 0.98309 0.97077 0.98413 1.21866 0.92352 0.89711 0.96216 1.44791 1.13583 1.02116 1.71873 1.19161 1.31879 0.81548 0.97558 0.87954 1.25855 1.01107 0.95609 0.98354 1.69861 1.38214 1.23249 1.26132 0.86675 0.74113 0.82286 0.85431 1.26074 1.24971 1.17007 0.88845 0.91933 0.91288 0.89594 0.89649 0.86947 0.91426 0.89428 0.89055 0.94472 0.90168 0.91805 0.90947 0.93345 0.89701 0.90490 0.93875 0.89233 0.97213 0.95293 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.37 9.02 71.23 0.64 -2.73 16 2 C 0.12 4.77 6.99 43.51 0.30 5.07 16 3 N -0.33 -12.27 12.63 -46.68 -0.59 -12.86 16 4 N -0.45 -12.44 7.29 -46.80 -0.34 -12.78 16 5 H 0.45 8.22 8.96 -213.42 -1.91 6.31 16 6 C 0.13 3.68 7.29 42.14 0.31 3.99 16 7 C -0.09 -1.64 10.25 71.24 0.73 -0.91 16 8 C -0.30 -11.25 3.95 -20.15 -0.08 -11.33 16 9 C 0.60 24.29 4.16 86.66 0.36 24.65 16 10 O -0.53 -25.56 10.58 -4.04 -0.04 -25.60 16 11 N -0.60 -19.78 2.58 -799.71 -2.07 -21.85 16 12 C 0.12 3.01 6.32 86.22 0.55 3.56 16 13 C -0.13 -3.27 6.06 30.53 0.19 -3.09 16 14 C -0.11 -2.50 5.89 30.62 0.18 -2.32 16 15 C -0.12 -3.56 4.95 30.67 0.15 -3.41 16 16 C 0.15 4.65 2.55 44.97 0.11 4.76 16 17 H 0.08 2.14 8.12 -2.38 -0.02 2.12 16 18 C 0.11 4.27 2.33 45.34 0.11 4.37 16 19 H 0.08 3.69 5.08 -70.09 -0.36 3.33 16 20 C -0.12 -3.57 6.33 31.78 0.20 -3.37 16 21 C -0.13 -4.34 6.97 31.98 0.22 -4.12 16 22 C 0.12 5.32 6.00 86.86 0.52 5.84 16 23 N -0.60 -27.67 1.28 -668.26 -0.85 -28.52 16 24 C -0.17 -9.21 6.10 84.03 0.51 -8.70 16 25 H 0.10 5.39 1.86 -2.91 -0.01 5.38 16 26 C -0.02 -0.89 5.24 84.86 0.44 -0.45 16 27 N -0.93 -56.67 11.70 21.65 0.25 -56.41 16 28 Si 0.88 50.03 26.59 68.60 1.82 51.85 16 29 H -0.33 -20.08 7.11 99.48 0.71 -19.38 16 30 H -0.32 -18.55 7.11 99.48 0.71 -17.84 16 31 H -0.25 -13.17 4.99 99.48 0.50 -12.67 16 32 H 0.09 5.07 5.59 -2.39 -0.01 5.06 16 33 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.07 3.26 5.59 -2.39 -0.01 3.25 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.66 7.96 -2.39 -0.02 1.64 16 37 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.91 6.12 -2.38 -0.01 1.90 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.04 1.19 7.57 -2.39 -0.02 1.17 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 1.93 6.94 -2.39 -0.02 1.92 16 45 H 0.05 1.93 6.58 -2.39 -0.02 1.91 16 46 H 0.08 2.12 6.60 -2.38 -0.02 2.11 16 47 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 48 H 0.04 1.63 7.48 -2.39 -0.02 1.61 16 49 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 50 H 0.01 0.47 4.95 -2.39 -0.01 0.46 16 51 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.25 15.04 8.31 -92.72 -0.77 14.27 16 Total: -1.00 -76.68 371.36 2.13 -74.55 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -1.51 Total: 19.82 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 5.45 Total: 11.81 kcal Atomic # 7 Polarization: -128.83 SS G_CDS: -3.60 Total: -132.43 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.04 Total: -25.60 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 1.82 Total: 51.85 kcal Total: -76.68 2.13 -74.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025279137.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.259 kcal (2) G-P(sol) polarization free energy of solvation -76.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds