Wall clock time and date at job start Wed Apr 1 2020 04:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32141 * 119.89847 * 2 1 4 4 C 1.32086 * 120.06530 * 179.77050 * 3 2 1 5 5 C 1.50704 * 120.06064 * 180.28007 * 4 3 2 6 6 C 1.39436 * 119.87496 * 0.50785 * 4 3 2 7 7 C 1.48152 * 120.09702 * 179.76949 * 6 4 3 8 8 O 1.21516 * 120.00036 * 354.62296 * 7 6 4 9 9 N 1.34776 * 120.00286 * 174.61678 * 7 6 4 10 10 C 1.46493 * 120.00239 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47341 * 35.00161 * 10 9 7 12 12 C 1.53004 * 109.47310 * 275.00083 * 10 9 7 13 13 C 1.52999 * 109.47198 * 155.00647 * 10 9 7 14 14 H 1.09008 * 109.49723 * 305.06213 * 13 10 9 15 15 C 1.53041 * 109.49625 * 185.00284 * 13 10 9 16 16 C 1.53043 * 109.53512 * 178.68168 * 15 13 10 17 17 C 1.53190 * 109.31827 * 61.36139 * 16 15 13 18 18 N 1.46927 * 108.77251 * 305.36875 * 17 16 15 19 19 C 1.36933 * 120.62771 * 233.57925 * 18 17 16 20 20 H 1.08004 * 120.00240 * 148.02827 * 19 18 17 21 21 C 1.38815 * 120.00478 * 328.03308 * 19 18 17 22 22 N 1.31619 * 119.99422 * 349.13031 * 21 19 18 23 23 Si 1.86796 * 120.00376 * 169.12780 * 21 19 18 24 24 H 1.48497 * 109.47133 * 90.00158 * 23 21 19 25 25 H 1.48496 * 109.47241 * 210.00134 * 23 21 19 26 26 H 1.48496 * 109.47195 * 329.99967 * 23 21 19 27 27 C 1.46925 * 118.74302 * 53.60594 * 18 17 16 28 28 N 1.33005 * 119.80850 * 359.74704 * 6 4 3 29 29 C 1.31798 * 119.92374 * 0.02562 * 28 6 4 30 30 C 1.50702 * 119.93541 * 179.97438 * 29 28 6 31 31 H 1.09001 * 109.46808 * 269.72293 * 1 2 3 32 32 H 1.09001 * 109.46845 * 149.72831 * 1 2 3 33 33 H 1.08993 * 109.47308 * 29.71905 * 1 2 3 34 34 H 1.09000 * 109.46994 * 263.21112 * 5 4 3 35 35 H 1.08996 * 109.46963 * 23.20629 * 5 4 3 36 36 H 1.08991 * 109.47126 * 143.20651 * 5 4 3 37 37 H 0.97005 * 119.99673 * 0.02562 * 9 7 6 38 38 H 1.08999 * 109.47438 * 179.97438 * 12 10 9 39 39 H 1.08991 * 109.47194 * 300.00318 * 12 10 9 40 40 H 1.09007 * 109.46463 * 60.00249 * 12 10 9 41 41 H 1.08996 * 109.45819 * 298.69460 * 15 13 10 42 42 H 1.08998 * 109.46295 * 58.67772 * 15 13 10 43 43 H 1.09003 * 109.49643 * 181.31922 * 16 15 13 44 44 H 1.08999 * 109.49683 * 301.37556 * 16 15 13 45 45 H 1.09003 * 109.58175 * 65.14778 * 17 16 15 46 46 H 1.08996 * 109.59023 * 185.57771 * 17 16 15 47 47 H 0.97007 * 120.00108 * 179.97438 * 22 21 19 48 48 H 1.08990 * 109.58819 * 186.60548 * 27 18 17 49 49 H 1.09000 * 109.58497 * 66.17568 * 27 18 17 50 50 H 1.09005 * 109.46278 * 270.02036 * 30 29 28 51 51 H 1.08997 * 109.46960 * 30.01590 * 30 29 28 52 52 H 1.09001 * 109.46896 * 150.02265 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 0.0046 5 6 4.2376 2.4559 0.0110 6 6 4.1846 -0.0576 -0.0013 7 6 5.6661 -0.0590 -0.0014 8 8 6.2747 0.9886 -0.0949 9 7 6.3390 -1.2222 0.1025 10 6 7.8039 -1.2236 0.1018 11 1 8.1684 -0.3329 0.6137 12 6 8.3134 -1.2270 -1.3409 13 6 8.3130 -2.4719 0.8253 14 1 7.8782 -2.5165 1.8239 15 6 9.8384 -2.4124 0.9347 16 6 10.3459 -3.6446 1.6872 17 6 9.9660 -4.9070 0.9069 18 7 8.5158 -4.8987 0.6713 19 6 7.7434 -5.9686 1.0372 20 1 6.7224 -5.8145 1.3538 21 6 8.2727 -7.2514 1.0013 22 7 9.4328 -7.4684 0.4188 23 14 7.3385 -8.6694 1.7796 24 1 6.4367 -9.2811 0.7707 25 1 8.3020 -9.6896 2.2654 26 1 6.5341 -8.1649 2.9213 27 6 7.9100 -3.7209 0.0352 28 7 3.5166 -1.2077 -0.0064 29 6 2.1986 -1.2026 -0.0064 30 6 1.4415 -2.5056 -0.0128 31 1 -0.3633 -0.0050 1.0277 32 1 -0.3633 -0.8876 -0.5181 33 1 -0.3633 0.8924 -0.5094 34 1 4.5275 2.7133 -1.0078 35 1 3.5984 3.2404 0.4159 36 1 5.1299 2.3590 0.6292 37 1 5.8532 -2.0585 0.1769 38 1 9.4034 -1.2276 -1.3414 39 1 7.9490 -2.1176 -1.8527 40 1 7.9506 -0.3376 -1.8563 41 1 10.2736 -2.3924 -0.0644 42 1 10.1288 -1.5118 1.4756 43 1 11.4302 -3.5900 1.7852 44 1 9.8924 -3.6784 2.6778 45 1 10.4912 -4.9181 -0.0482 46 1 10.2371 -5.7899 1.4857 47 1 9.8030 -8.3648 0.3939 48 1 6.8248 -3.8212 0.0389 49 1 8.2677 -3.6354 -0.9909 50 1 1.2593 -2.8148 -1.0421 51 1 2.0283 -3.2692 0.4976 52 1 0.4893 -2.3749 0.5014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025478110.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:59 Heat of formation + Delta-G solvation = 17.239711 kcal Electronic energy + Delta-G solvation = -31291.379435 eV Core-core repulsion = 27290.998887 eV Total energy + Delta-G solvation = -4000.380548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.70655 -39.73182 -38.03867 -35.55401 -34.98821 -34.53386 -33.00078 -31.14487 -30.42996 -30.32258 -29.15612 -28.06181 -26.47590 -25.29224 -24.18484 -23.64209 -22.39349 -22.07635 -20.84323 -20.19300 -18.71175 -18.50273 -17.46121 -16.59927 -16.13361 -15.75883 -15.44145 -14.93658 -14.83988 -14.57753 -14.35485 -13.87010 -13.71679 -13.59133 -13.43687 -13.35356 -13.24015 -13.04354 -12.95041 -12.56974 -12.51331 -12.37030 -12.30060 -12.25370 -12.21258 -11.81958 -11.75303 -11.58398 -11.04949 -10.95385 -10.92402 -10.56485 -10.47645 -10.19797 -10.14135 -10.03732 -9.86734 -9.62442 -9.38646 -9.25500 -9.20179 -8.83551 -8.47486 -6.58948 -5.78441 -3.26574 0.16967 0.79175 2.60095 3.02937 3.35810 3.42683 3.44377 3.49542 3.67033 3.72759 4.08518 4.37726 4.47373 4.62047 4.82760 4.96161 5.06128 5.12456 5.18031 5.24104 5.28637 5.30557 5.41545 5.43516 5.52408 5.55624 5.59130 5.64378 5.69803 5.71286 5.72918 5.86551 5.94974 6.02494 6.13196 6.22165 6.24479 6.26811 6.37399 6.51464 6.61674 6.64168 6.72424 6.80519 6.88904 6.94148 7.00825 7.38311 7.42524 7.63476 7.70607 7.78973 8.16658 8.48137 9.22695 9.84197 10.43019 11.29491 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010896 B = 0.003101 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.082736 B = 9027.934770 C =11249.155202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.106 3.894 3 N -0.445 5.445 4 C 0.136 3.864 5 C -0.104 4.104 6 C 0.024 3.976 7 C 0.575 3.425 8 O -0.531 6.531 9 N -0.696 5.696 10 C 0.148 3.852 11 H 0.084 0.916 12 C -0.165 4.165 13 C -0.113 4.113 14 H 0.072 0.928 15 C -0.100 4.100 16 C -0.143 4.143 17 C 0.171 3.829 18 N -0.591 5.591 19 C -0.253 4.253 20 H 0.062 0.938 21 C 0.005 3.995 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.151 3.849 28 N -0.403 5.403 29 C 0.072 3.928 30 C -0.104 4.104 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.412 0.588 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.017 0.983 46 H 0.085 0.915 47 H 0.254 0.746 48 H 0.048 0.952 49 H 0.026 0.974 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.269 15.554 -1.146 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.037 4.037 3 N -0.160 5.160 4 C -0.004 4.004 5 C -0.161 4.161 6 C -0.117 4.117 7 C 0.359 3.641 8 O -0.408 6.408 9 N -0.347 5.347 10 C 0.044 3.956 11 H 0.102 0.898 12 C -0.223 4.223 13 C -0.134 4.134 14 H 0.090 0.910 15 C -0.138 4.138 16 C -0.182 4.182 17 C 0.046 3.954 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.080 0.920 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.024 3.976 28 N -0.121 5.121 29 C -0.072 4.072 30 C -0.161 4.161 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.249 0.751 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.036 0.964 46 H 0.103 0.897 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.043 0.957 50 H 0.103 0.897 51 H 0.105 0.895 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.664 16.109 -1.233 20.528 hybrid contribution -0.694 -1.285 0.376 1.508 sum -13.358 14.824 -0.857 19.973 Atomic orbital electron populations 1.20809 0.87389 1.04299 1.03786 1.22439 0.98575 0.88925 0.93764 1.68308 1.07858 1.28841 1.11026 1.22345 0.89743 0.96670 0.91637 1.21037 0.99969 0.90533 1.04582 1.22014 0.95904 0.90147 1.03665 1.17580 0.84839 0.84481 0.77236 1.90720 1.68491 1.30941 1.50677 1.46082 1.07901 1.09127 1.71594 1.21133 0.77908 0.99617 0.96971 0.89770 1.22261 1.01701 1.02152 0.96164 1.21961 0.96759 0.94619 1.00044 0.91000 1.21416 0.94124 0.97823 1.00413 1.22196 0.98682 0.97485 0.99859 1.20779 0.83732 0.94467 0.96461 1.43970 1.03702 1.14897 1.68713 1.19140 0.96369 0.84802 1.37996 0.91992 1.25161 0.97585 0.97441 0.99154 1.69985 1.19031 1.20602 1.45145 0.86298 0.79052 0.82306 0.79112 1.21347 1.21597 1.20480 1.21008 0.96327 0.86392 0.93840 1.68190 1.08662 1.28536 1.06665 1.22156 0.90013 0.96976 0.98075 1.20777 0.99290 0.92268 1.03801 0.89522 0.89631 0.89901 0.89585 0.91145 0.87417 0.75082 0.91229 0.91505 0.92856 0.92209 0.93548 0.93257 0.92873 0.96446 0.89673 0.93635 0.93369 0.95658 0.89714 0.89511 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 9.37 36.01 0.34 -0.31 16 2 C 0.11 1.09 6.79 -82.28 -0.56 0.54 16 3 N -0.44 -5.46 10.34 -5.23 -0.05 -5.52 16 4 C 0.14 1.77 6.82 -82.03 -0.56 1.21 16 5 C -0.10 -1.17 8.87 36.01 0.32 -0.85 16 6 C 0.02 0.34 6.75 -82.84 -0.56 -0.22 16 7 C 0.57 8.54 7.72 -12.19 -0.09 8.44 16 8 O -0.53 -8.40 12.99 5.35 0.07 -8.33 16 9 N -0.70 -10.22 5.00 -54.66 -0.27 -10.49 16 10 C 0.15 2.19 2.35 -67.93 -0.16 2.03 16 11 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 12 C -0.16 -2.33 8.76 37.16 0.33 -2.01 16 13 C -0.11 -1.90 2.27 -90.50 -0.21 -2.10 16 14 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 15 C -0.10 -1.64 4.89 -26.69 -0.13 -1.77 16 16 C -0.14 -2.70 6.08 -26.61 -0.16 -2.86 16 17 C 0.17 4.03 5.25 -3.71 -0.02 4.01 16 18 N -0.59 -14.46 2.98 -172.33 -0.51 -14.97 16 19 C -0.25 -6.83 9.57 -15.06 -0.14 -6.98 16 20 H 0.06 1.64 7.85 -52.48 -0.41 1.23 16 21 C 0.01 0.15 5.04 -17.43 -0.09 0.06 16 22 N -0.90 -25.93 11.11 55.49 0.62 -25.32 16 23 Si 0.90 21.42 29.57 -169.99 -5.03 16.40 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.15 3.03 5.26 -3.71 -0.02 3.01 16 28 N -0.40 -5.44 9.65 -5.88 -0.06 -5.50 16 29 C 0.07 0.79 6.79 -82.42 -0.56 0.23 16 30 C -0.10 -0.79 9.37 36.01 0.34 -0.46 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.35 6.69 -51.93 -0.35 0.00 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 1.32 5.86 -51.93 -0.30 1.02 16 37 H 0.41 6.14 6.65 -40.82 -0.27 5.87 16 38 H 0.07 0.93 6.60 -51.93 -0.34 0.59 16 39 H 0.07 1.00 6.23 -51.93 -0.32 0.67 16 40 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 41 H 0.06 0.97 6.63 -51.93 -0.34 0.62 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 2.26 6.16 -51.93 -0.32 1.94 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.05 0.96 6.75 -51.93 -0.35 0.61 16 49 H 0.03 0.52 6.06 -51.93 -0.31 0.21 16 50 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 52 H 0.08 0.42 6.70 -51.93 -0.35 0.07 16 LS Contribution 400.68 15.07 6.04 6.04 Total: -1.00 -31.12 400.68 -9.42 -40.54 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.28 Total: 5.17 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.94 Total: 1.98 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.28 Total: -61.80 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.07 Total: -8.33 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.12 -9.42 -40.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025478110.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.784 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds