Wall clock time and date at job start Wed Apr 1 2020 04:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32141 * 119.89847 * 2 1 4 4 C 1.32086 * 120.06530 * 179.77050 * 3 2 1 5 5 C 1.50704 * 120.06064 * 180.28007 * 4 3 2 6 6 C 1.39436 * 119.87496 * 0.50785 * 4 3 2 7 7 C 1.48152 * 120.09702 * 179.76949 * 6 4 3 8 8 O 1.21516 * 120.00036 * 354.62296 * 7 6 4 9 9 N 1.34776 * 120.00286 * 174.61678 * 7 6 4 10 10 C 1.46493 * 120.00239 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47341 * 35.00161 * 10 9 7 12 12 C 1.53004 * 109.47310 * 275.00083 * 10 9 7 13 13 C 1.52999 * 109.47198 * 155.00647 * 10 9 7 14 14 H 1.09008 * 109.49723 * 305.06213 * 13 10 9 15 15 C 1.53041 * 109.49625 * 185.00284 * 13 10 9 16 16 C 1.53043 * 109.53512 * 178.68168 * 15 13 10 17 17 C 1.53190 * 109.31827 * 61.36139 * 16 15 13 18 18 N 1.46927 * 108.77251 * 305.36875 * 17 16 15 19 19 C 1.36933 * 120.62771 * 233.57925 * 18 17 16 20 20 H 1.08004 * 120.00240 * 148.02827 * 19 18 17 21 21 C 1.38815 * 120.00478 * 328.03308 * 19 18 17 22 22 N 1.31619 * 119.99422 * 349.13031 * 21 19 18 23 23 Si 1.86796 * 120.00376 * 169.12780 * 21 19 18 24 24 H 1.48497 * 109.47133 * 90.00158 * 23 21 19 25 25 H 1.48496 * 109.47241 * 210.00134 * 23 21 19 26 26 H 1.48496 * 109.47195 * 329.99967 * 23 21 19 27 27 C 1.46925 * 118.74302 * 53.60594 * 18 17 16 28 28 N 1.33005 * 119.80850 * 359.74704 * 6 4 3 29 29 C 1.31798 * 119.92374 * 0.02562 * 28 6 4 30 30 C 1.50702 * 119.93541 * 179.97438 * 29 28 6 31 31 H 1.09001 * 109.46808 * 269.72293 * 1 2 3 32 32 H 1.09001 * 109.46845 * 149.72831 * 1 2 3 33 33 H 1.08993 * 109.47308 * 29.71905 * 1 2 3 34 34 H 1.09000 * 109.46994 * 263.21112 * 5 4 3 35 35 H 1.08996 * 109.46963 * 23.20629 * 5 4 3 36 36 H 1.08991 * 109.47126 * 143.20651 * 5 4 3 37 37 H 0.97005 * 119.99673 * 0.02562 * 9 7 6 38 38 H 1.08999 * 109.47438 * 179.97438 * 12 10 9 39 39 H 1.08991 * 109.47194 * 300.00318 * 12 10 9 40 40 H 1.09007 * 109.46463 * 60.00249 * 12 10 9 41 41 H 1.08996 * 109.45819 * 298.69460 * 15 13 10 42 42 H 1.08998 * 109.46295 * 58.67772 * 15 13 10 43 43 H 1.09003 * 109.49643 * 181.31922 * 16 15 13 44 44 H 1.08999 * 109.49683 * 301.37556 * 16 15 13 45 45 H 1.09003 * 109.58175 * 65.14778 * 17 16 15 46 46 H 1.08996 * 109.59023 * 185.57771 * 17 16 15 47 47 H 0.97007 * 120.00108 * 179.97438 * 22 21 19 48 48 H 1.08990 * 109.58819 * 186.60548 * 27 18 17 49 49 H 1.09000 * 109.58497 * 66.17568 * 27 18 17 50 50 H 1.09005 * 109.46278 * 270.02036 * 30 29 28 51 51 H 1.08997 * 109.46960 * 30.01590 * 30 29 28 52 52 H 1.09001 * 109.46896 * 150.02265 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 0.0046 5 6 4.2376 2.4559 0.0110 6 6 4.1846 -0.0576 -0.0013 7 6 5.6661 -0.0590 -0.0014 8 8 6.2747 0.9886 -0.0949 9 7 6.3390 -1.2222 0.1025 10 6 7.8039 -1.2236 0.1018 11 1 8.1684 -0.3329 0.6137 12 6 8.3134 -1.2270 -1.3409 13 6 8.3130 -2.4719 0.8253 14 1 7.8782 -2.5165 1.8239 15 6 9.8384 -2.4124 0.9347 16 6 10.3459 -3.6446 1.6872 17 6 9.9660 -4.9070 0.9069 18 7 8.5158 -4.8987 0.6713 19 6 7.7434 -5.9686 1.0372 20 1 6.7224 -5.8145 1.3538 21 6 8.2727 -7.2514 1.0013 22 7 9.4328 -7.4684 0.4188 23 14 7.3385 -8.6694 1.7796 24 1 6.4367 -9.2811 0.7707 25 1 8.3020 -9.6896 2.2654 26 1 6.5341 -8.1649 2.9213 27 6 7.9100 -3.7209 0.0352 28 7 3.5166 -1.2077 -0.0064 29 6 2.1986 -1.2026 -0.0064 30 6 1.4415 -2.5056 -0.0128 31 1 -0.3633 -0.0050 1.0277 32 1 -0.3633 -0.8876 -0.5181 33 1 -0.3633 0.8924 -0.5094 34 1 4.5275 2.7133 -1.0078 35 1 3.5984 3.2404 0.4159 36 1 5.1299 2.3590 0.6292 37 1 5.8532 -2.0585 0.1769 38 1 9.4034 -1.2276 -1.3414 39 1 7.9490 -2.1176 -1.8527 40 1 7.9506 -0.3376 -1.8563 41 1 10.2736 -2.3924 -0.0644 42 1 10.1288 -1.5118 1.4756 43 1 11.4302 -3.5900 1.7852 44 1 9.8924 -3.6784 2.6778 45 1 10.4912 -4.9181 -0.0482 46 1 10.2371 -5.7899 1.4857 47 1 9.8030 -8.3648 0.3939 48 1 6.8248 -3.8212 0.0389 49 1 8.2677 -3.6354 -0.9909 50 1 1.2593 -2.8148 -1.0421 51 1 2.0283 -3.2692 0.4976 52 1 0.4893 -2.3749 0.5014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025478110.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:58 Heat of formation + Delta-G solvation = -2.165135 kcal Electronic energy + Delta-G solvation = -31292.220892 eV Core-core repulsion = 27290.998887 eV Total energy + Delta-G solvation = -4001.222005 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.61644 -40.91584 -39.48431 -36.86091 -36.07254 -35.36588 -34.66186 -32.56185 -32.23676 -31.15449 -29.96603 -29.37729 -27.36750 -27.21711 -25.35848 -24.57380 -23.91488 -23.31111 -22.15098 -21.46395 -20.17947 -19.48946 -18.75727 -18.30927 -17.17004 -16.89013 -16.79181 -16.23094 -16.04450 -15.84660 -15.66329 -15.43838 -15.04675 -14.71912 -14.56908 -14.37859 -14.08998 -13.98120 -13.92064 -13.84518 -13.71388 -13.63539 -13.40191 -13.25411 -13.14063 -13.01765 -12.88283 -12.76485 -12.68031 -12.56801 -12.30492 -12.05417 -11.96273 -11.90361 -11.67931 -11.50736 -11.27089 -11.13646 -11.05061 -10.53141 -10.25154 -10.17207 -9.86612 -8.57887 -7.85150 -5.36321 -0.74577 -0.10628 1.46452 1.47526 1.56019 1.56919 1.94245 2.50928 2.54589 2.80330 2.90302 3.22797 3.30439 3.52993 3.60202 3.79570 3.90445 3.98652 3.99453 4.05931 4.15924 4.35326 4.40237 4.47405 4.64533 4.64929 4.68271 4.69159 4.70401 4.74805 4.75762 4.81476 4.85731 4.87908 4.92639 4.95809 5.04578 5.08907 5.13751 5.18237 5.26049 5.29581 5.35695 5.42976 5.46246 5.51351 5.58654 5.68549 5.81433 6.05361 6.34806 6.43214 6.61490 7.01627 7.17963 7.87804 8.40962 9.20251 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010896 B = 0.003101 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.082736 B = 9027.934770 C =11249.155202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.111 3.889 3 N -0.459 5.459 4 C 0.126 3.874 5 C -0.097 4.097 6 C -0.003 4.003 7 C 0.575 3.425 8 O -0.544 6.544 9 N -0.698 5.698 10 C 0.157 3.843 11 H 0.090 0.910 12 C -0.159 4.159 13 C -0.098 4.098 14 H 0.062 0.938 15 C -0.096 4.096 16 C -0.132 4.132 17 C 0.176 3.824 18 N -0.609 5.609 19 C -0.263 4.263 20 H 0.063 0.937 21 C -0.047 4.047 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.270 1.270 27 C 0.153 3.847 28 N -0.426 5.426 29 C 0.064 3.936 30 C -0.102 4.102 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.410 0.590 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.047 0.953 45 H -0.003 1.003 46 H 0.049 0.951 47 H 0.249 0.751 48 H 0.045 0.955 49 H 0.023 0.977 50 H 0.098 0.902 51 H 0.074 0.926 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.342 16.656 -0.754 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.032 4.032 3 N -0.174 5.174 4 C -0.013 4.013 5 C -0.154 4.154 6 C -0.142 4.142 7 C 0.360 3.640 8 O -0.423 6.423 9 N -0.348 5.348 10 C 0.053 3.947 11 H 0.108 0.892 12 C -0.216 4.216 13 C -0.118 4.118 14 H 0.080 0.920 15 C -0.134 4.134 16 C -0.171 4.171 17 C 0.051 3.949 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.080 0.920 21 C -0.243 4.243 22 N -0.581 5.581 23 Si 0.794 3.206 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.195 1.195 27 C 0.027 3.973 28 N -0.143 5.143 29 C -0.081 4.081 30 C -0.160 4.160 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.247 0.753 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.015 0.985 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.041 0.959 50 H 0.116 0.884 51 H 0.093 0.907 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.728 17.256 -0.841 22.702 hybrid contribution -0.178 -1.628 0.226 1.654 sum -14.906 15.627 -0.615 21.605 Atomic orbital electron populations 1.21008 0.84053 1.05787 1.05293 1.23183 1.00603 0.88122 0.91291 1.68402 1.07421 1.29808 1.11811 1.22540 0.90348 0.96818 0.91613 1.20966 0.99605 0.90407 1.04455 1.21872 0.95381 0.90894 1.06057 1.17746 0.85447 0.84120 0.76685 1.90703 1.69021 1.31224 1.51354 1.46064 1.07784 1.09135 1.71853 1.21003 0.78117 0.98477 0.97108 0.89160 1.22203 1.02344 1.01615 0.95486 1.21735 0.97312 0.93742 0.99033 0.91962 1.21409 0.93403 0.97717 1.00851 1.22030 1.00104 0.96096 0.98884 1.20600 0.83363 0.95504 0.95475 1.44224 1.03978 1.15583 1.69434 1.19459 0.96643 0.85825 1.37421 0.91971 1.25895 0.98538 0.99794 1.00069 1.70149 1.20526 1.20684 1.46698 0.85298 0.77743 0.79143 0.78408 1.20980 1.21962 1.19524 1.21082 0.95960 0.86311 0.93927 1.68166 1.10113 1.28588 1.07448 1.22800 0.89433 0.98756 0.97096 1.20923 0.99994 0.90126 1.04912 0.87698 0.87061 0.89512 0.89454 0.89735 0.88589 0.75346 0.90106 0.92623 0.92711 0.91598 0.90458 0.91103 0.93443 0.98512 0.93235 0.94153 0.93672 0.95918 0.88394 0.90736 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.37 71.24 0.67 -0.25 16 2 C 0.11 2.09 6.79 42.63 0.29 2.37 16 3 N -0.46 -10.71 10.34 -170.47 -1.76 -12.48 16 4 C 0.13 3.23 6.82 42.81 0.29 3.53 16 5 C -0.10 -2.16 8.87 71.24 0.63 -1.53 16 6 C 0.00 -0.07 6.75 41.89 0.28 0.21 16 7 C 0.57 17.14 7.72 86.88 0.67 17.81 16 8 O -0.54 -17.16 12.99 -3.77 -0.05 -17.21 16 9 N -0.70 -20.44 5.00 -445.12 -2.23 -22.66 16 10 C 0.16 4.49 2.35 44.99 0.11 4.60 16 11 H 0.09 2.55 7.58 -2.39 -0.02 2.53 16 12 C -0.16 -4.33 8.76 71.98 0.63 -3.70 16 13 C -0.10 -3.20 2.27 -10.72 -0.02 -3.22 16 14 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 15 C -0.10 -2.97 4.89 30.62 0.15 -2.82 16 16 C -0.13 -4.87 6.08 30.67 0.19 -4.68 16 17 C 0.18 8.49 5.25 86.36 0.45 8.94 16 18 N -0.61 -30.39 2.98 -699.11 -2.08 -32.47 16 19 C -0.26 -14.44 9.57 84.03 0.80 -13.64 16 20 H 0.06 3.33 7.85 -2.91 -0.02 3.31 16 21 C -0.05 -2.65 5.04 84.86 0.43 -2.22 16 22 N -0.93 -55.24 11.11 21.65 0.24 -55.00 16 23 Si 0.97 44.66 29.57 68.60 2.03 46.69 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 27 C 0.15 6.17 5.26 86.36 0.45 6.63 16 28 N -0.43 -11.39 9.65 -172.53 -1.66 -13.06 16 29 C 0.06 1.32 6.79 42.68 0.29 1.61 16 30 C -0.10 -1.32 9.37 71.24 0.67 -0.65 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.11 0.43 6.69 -2.39 -0.02 0.41 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 2.37 5.86 -2.39 -0.01 2.35 16 37 H 0.41 12.37 6.65 -92.70 -0.62 11.75 16 38 H 0.08 2.02 6.60 -2.39 -0.02 2.00 16 39 H 0.05 1.64 6.23 -2.39 -0.01 1.62 16 40 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.07 1.99 6.63 -2.39 -0.02 1.98 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 46 H 0.05 2.72 6.16 -2.39 -0.01 2.71 16 47 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 48 H 0.04 1.82 6.75 -2.39 -0.02 1.80 16 49 H 0.02 0.95 6.06 -2.39 -0.01 0.93 16 50 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 51 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.11 0.72 6.70 -2.39 -0.02 0.70 16 Total: -1.00 -69.24 400.68 1.78 -67.45 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.32 Total: 25.74 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 6.98 Total: 12.99 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -7.50 Total: -135.67 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.05 Total: -17.21 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.24 1.78 -67.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025478110.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.289 kcal (2) G-P(sol) polarization free energy of solvation -69.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds