Wall clock time and date at job start Wed Apr 1 2020 04:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34662 * 125.98771 * 2 1 4 4 N 1.36878 * 106.81671 * 180.02562 * 3 2 1 5 5 C 1.46508 * 126.39687 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47006 * 53.58406 * 5 4 3 7 7 C 1.52997 * 109.47393 * 293.58021 * 5 4 3 8 8 C 1.50707 * 109.46708 * 173.57880 * 5 4 3 9 9 O 1.21275 * 119.99460 * 120.09583 * 8 5 4 10 10 N 1.34772 * 120.00138 * 300.08850 * 8 5 4 11 11 C 1.49625 * 126.07369 * 355.14806 * 10 8 5 12 12 C 1.51524 * 102.49277 * 154.35128 * 11 10 8 13 13 H 1.08997 * 111.13041 * 287.40140 * 12 11 10 14 14 C 1.51563 * 123.33398 * 151.63333 * 12 11 10 15 15 C 1.56337 * 101.81522 * 207.98249 * 14 12 11 16 16 C 1.56009 * 105.76693 * 25.43871 * 15 14 12 17 17 H 1.09000 * 110.52485 * 248.19371 * 16 15 14 18 18 N 1.46496 * 110.52671 * 125.58558 * 16 15 14 19 19 C 1.36931 * 120.00176 * 88.34249 * 18 16 15 20 20 H 1.07994 * 120.00078 * 359.97438 * 19 18 16 21 21 C 1.38815 * 119.99851 * 179.72779 * 19 18 16 22 22 N 1.31617 * 120.00354 * 0.26806 * 21 19 18 23 23 Si 1.86805 * 119.99749 * 180.27639 * 21 19 18 24 24 H 1.48495 * 109.47454 * 89.99702 * 23 21 19 25 25 H 1.48500 * 109.46635 * 209.99689 * 23 21 19 26 26 H 1.48498 * 109.46789 * 329.99040 * 23 21 19 27 27 C 1.49705 * 104.11110 * 6.88647 * 16 15 14 28 28 H 1.08995 * 108.54174 * 78.03880 * 27 16 15 29 29 C 1.49292 * 126.07206 * 175.14438 * 10 8 5 30 30 C 1.35037 * 107.20627 * 0.25672 * 4 3 2 31 31 N 1.30498 * 108.69826 * 359.56872 * 30 4 3 32 32 H 1.08995 * 109.47340 * 90.00193 * 1 2 3 33 33 H 1.09002 * 109.46715 * 210.00597 * 1 2 3 34 34 H 1.09000 * 109.47021 * 329.99780 * 1 2 3 35 35 H 1.08004 * 126.59361 * 0.02799 * 3 2 1 36 36 H 1.09001 * 109.46977 * 184.38726 * 6 5 4 37 37 H 1.09007 * 109.46974 * 304.38260 * 6 5 4 38 38 H 1.08997 * 109.47179 * 64.38299 * 6 5 4 39 39 H 1.09004 * 109.46688 * 300.00320 * 7 5 4 40 40 H 1.08994 * 109.47057 * 59.99891 * 7 5 4 41 41 H 1.08999 * 109.47201 * 180.02562 * 7 5 4 42 42 H 1.09002 * 110.80354 * 36.09935 * 11 10 8 43 43 H 1.08994 * 110.96783 * 272.67652 * 11 10 8 44 44 H 1.08999 * 110.96331 * 89.85533 * 14 12 11 45 45 H 1.09004 * 110.96115 * 326.11526 * 14 12 11 46 46 H 1.08991 * 110.19450 * 266.36107 * 15 14 12 47 47 H 1.08999 * 110.18964 * 144.50496 * 15 14 12 48 48 H 0.97006 * 119.99940 * 268.33903 * 18 16 15 49 49 H 0.96999 * 120.00160 * 180.02562 * 22 21 19 50 50 H 1.09002 * 110.39647 * 292.41736 * 29 10 8 51 51 H 1.09001 * 110.39319 * 54.70066 * 29 10 8 52 52 H 1.08005 * 125.65134 * 179.71353 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2983 1.0896 0.0000 4 7 3.5912 0.6401 -0.0006 5 6 4.7996 1.4685 -0.0013 6 6 4.7366 2.4634 1.1594 7 6 4.8934 2.2326 -1.3235 8 6 6.0123 0.5879 0.1571 9 8 6.8681 0.5743 -0.7021 10 7 6.1458 -0.1843 1.2536 11 6 5.2313 -0.1986 2.4377 12 6 5.4351 -1.5939 2.9924 13 1 4.9667 -2.3428 2.3539 14 6 5.2633 -1.9409 4.4577 15 6 6.2383 -3.1527 4.6161 16 6 7.3151 -2.9791 3.5006 17 1 7.2160 -3.7619 2.7486 18 7 8.6608 -2.9919 4.0792 19 6 9.3241 -4.1785 4.2438 20 1 8.8549 -5.1050 3.9475 21 6 10.6015 -4.1901 4.7869 22 7 11.1732 -3.0610 5.1484 23 14 11.5093 -5.8081 5.0043 24 1 12.2961 -6.1028 3.7799 25 1 12.4250 -5.7092 6.1692 26 1 10.5285 -6.8985 5.2370 27 6 7.0119 -1.6389 2.9062 28 1 7.3996 -0.8685 3.5726 29 6 7.2324 -1.1774 1.5023 30 6 3.5449 -0.7094 -0.0067 31 7 2.2952 -1.0852 -0.0005 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.9750 2.1201 0.0004 36 1 5.5972 3.1307 1.1130 37 1 3.8193 3.0478 1.0876 38 1 4.7484 1.9203 2.1044 39 1 4.9382 1.5238 -2.1504 40 1 4.0162 2.8694 -1.4381 41 1 5.7926 2.8486 -1.3242 42 1 4.1962 -0.0520 2.1293 43 1 5.5265 0.5551 3.1677 44 1 4.2360 -2.2368 4.6706 45 1 5.5678 -1.1097 5.0936 46 1 5.6996 -4.0898 4.4764 47 1 6.7085 -3.1312 5.5993 48 1 9.0822 -2.1597 4.3457 49 1 12.0660 -3.0691 5.5276 50 1 7.1468 -2.0153 0.8104 51 1 8.2093 -0.7038 1.4053 52 1 4.4004 -1.3686 -0.0131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026294011.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:11 Heat of formation + Delta-G solvation = 67.606544 kcal Electronic energy + Delta-G solvation = -32159.060137 eV Core-core repulsion = 28160.863658 eV Total energy + Delta-G solvation = -3998.196478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.69957 -40.69026 -39.16783 -36.09688 -35.51571 -33.45924 -32.10952 -31.01794 -30.76508 -29.85926 -28.63417 -27.83115 -27.12154 -25.52967 -24.31779 -23.12827 -22.70180 -21.53942 -20.46106 -20.26123 -19.29709 -19.09332 -17.93261 -17.05615 -16.74045 -16.27953 -15.56514 -15.23989 -15.01981 -14.90954 -14.63255 -14.18875 -14.00431 -13.96250 -13.75487 -13.57294 -13.32602 -13.19297 -12.93173 -12.85748 -12.71826 -12.62410 -12.53090 -12.28114 -12.16017 -11.99819 -11.78152 -11.59713 -11.45073 -11.08475 -10.86101 -10.80210 -10.50772 -10.23038 -10.17438 -10.14653 -10.03170 -9.81823 -9.78022 -9.62702 -8.94705 -8.86998 -8.51929 -7.01462 -5.80925 -3.10198 1.80589 1.85450 2.48457 2.75823 2.93963 3.41710 3.47361 3.48476 3.70538 4.09429 4.22226 4.28624 4.41172 4.54406 4.55586 4.80660 4.89359 4.96635 4.99313 5.07889 5.11342 5.17653 5.21763 5.25455 5.28105 5.33343 5.50408 5.50998 5.51159 5.52834 5.62944 5.66081 5.70984 5.78854 5.79915 5.80469 5.89804 5.96311 6.01385 6.04729 6.09279 6.27714 6.30019 6.43891 6.55846 6.57828 6.75199 6.91497 7.00989 7.20095 7.67783 7.74960 7.91094 8.37216 9.48821 10.04552 10.38968 11.41489 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.002759 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.383573 B =10144.935353 C =10964.889867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.002 4.002 3 C -0.052 4.052 4 N -0.448 5.448 5 C 0.148 3.852 6 C -0.167 4.167 7 C -0.141 4.141 8 C 0.528 3.472 9 O -0.519 6.519 10 N -0.616 5.616 11 C 0.108 3.892 12 C -0.124 4.124 13 H 0.089 0.911 14 C -0.099 4.099 15 C -0.142 4.142 16 C 0.200 3.800 17 H 0.056 0.944 18 N -0.720 5.720 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 C -0.119 4.119 28 H 0.075 0.925 29 C 0.132 3.868 30 C 0.193 3.807 31 N -0.485 5.485 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.172 0.828 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.073 0.927 51 H 0.080 0.920 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.301 13.491 -8.316 25.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.131 4.131 3 C -0.184 4.184 4 N -0.133 5.133 5 C 0.060 3.940 6 C -0.224 4.224 7 C -0.199 4.199 8 C 0.313 3.687 9 O -0.394 6.394 10 N -0.351 5.351 11 C -0.013 4.013 12 C -0.144 4.144 13 H 0.108 0.892 14 C -0.138 4.138 15 C -0.183 4.183 16 C 0.089 3.911 17 H 0.074 0.926 18 N -0.360 5.360 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.139 4.139 28 H 0.093 0.907 29 C 0.012 3.988 30 C -0.089 4.089 31 N -0.204 5.204 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.189 0.811 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.091 0.909 51 H 0.098 0.902 52 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -19.869 12.639 -8.846 25.155 hybrid contribution 1.142 0.310 0.325 1.228 sum -18.727 12.949 -8.520 24.310 Atomic orbital electron populations 1.20004 0.87729 1.02565 1.02037 1.20740 0.96482 0.88491 1.07340 1.22288 0.82523 1.00398 1.13229 1.45596 1.05754 1.07349 1.54623 1.21085 0.81713 0.91294 0.99872 1.22394 1.04349 0.98642 0.97042 1.21993 1.03446 1.00388 0.94079 1.19718 0.87422 0.80171 0.81385 1.90774 1.42455 1.64953 1.41176 1.49964 1.28110 1.39378 1.17630 1.22071 0.93797 0.98216 0.87258 1.22579 0.97529 0.95564 0.98686 0.89229 1.21849 0.99503 0.99269 0.93133 1.23789 0.96517 0.96000 1.02037 1.19925 0.86348 0.92186 0.92644 0.92638 1.42494 1.12450 1.07195 1.73888 1.19239 0.96952 0.86491 1.34476 0.91095 1.24742 0.97455 0.96846 1.01764 1.69653 1.15508 1.24557 1.48356 0.86209 0.79700 0.83105 0.77296 1.21702 1.21810 1.20713 1.22040 0.95162 1.01357 0.95338 0.90651 1.21024 0.89910 0.90975 0.96871 1.24990 0.97140 0.81869 1.04946 1.70254 1.00109 1.30239 1.19790 0.91603 0.91189 0.91506 0.81106 0.89741 0.90345 0.90225 0.90930 0.91049 0.89713 0.90111 0.90590 0.92057 0.91637 0.92525 0.90679 0.78202 0.93489 0.90896 0.90183 0.78518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.42 36.01 0.38 -0.13 16 2 C 0.00 -0.02 7.09 -82.86 -0.59 -0.60 16 3 C -0.05 -0.47 10.47 -16.57 -0.17 -0.64 16 4 N -0.45 -4.46 1.79 -105.82 -0.19 -4.65 16 5 C 0.15 1.40 0.79 -132.96 -0.10 1.29 16 6 C -0.17 -1.19 8.30 37.16 0.31 -0.88 16 7 C -0.14 -1.20 7.91 37.16 0.29 -0.91 16 8 C 0.53 6.72 5.66 -10.98 -0.06 6.66 16 9 O -0.52 -8.40 16.35 5.56 0.09 -8.31 16 10 N -0.62 -7.59 2.58 -171.73 -0.44 -8.03 16 11 C 0.11 1.15 4.12 -3.05 -0.01 1.14 16 12 C -0.12 -1.50 3.14 -89.36 -0.28 -1.78 16 13 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 14 C -0.10 -1.24 6.62 -25.67 -0.17 -1.41 16 15 C -0.14 -2.29 6.74 -23.33 -0.16 -2.44 16 16 C 0.20 3.65 3.43 -67.95 -0.23 3.41 16 17 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 18 N -0.72 -17.02 5.11 -53.45 -0.27 -17.29 16 19 C -0.24 -6.43 9.97 -15.06 -0.15 -6.58 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 23 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C -0.12 -1.77 2.19 -91.28 -0.20 -1.98 16 28 H 0.08 1.20 7.75 -51.93 -0.40 0.80 16 29 C 0.13 1.92 6.81 -4.26 -0.03 1.89 16 30 C 0.19 2.33 9.29 -90.38 -0.84 1.50 16 31 N -0.49 -6.40 11.25 -10.88 -0.12 -6.53 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.17 1.00 7.91 -52.48 -0.42 0.58 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.42 7.59 -51.93 -0.39 0.02 16 38 H 0.08 0.61 4.75 -51.93 -0.25 0.36 16 39 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 41 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.08 0.84 4.98 -51.93 -0.26 0.58 16 43 H 0.08 0.76 7.36 -51.93 -0.38 0.38 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 1.38 7.98 -51.93 -0.41 0.97 16 48 H 0.38 9.72 7.65 -40.82 -0.31 9.41 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 52 H 0.20 2.46 6.88 -52.48 -0.36 2.10 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -31.71 402.25 -9.94 -41.65 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -8.64 Total: 8.79 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.12 Total: -1.90 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.30 Total: -63.34 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.71 -9.94 -41.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026294011.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.256 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds