Wall clock time and date at job start Wed Apr 1 2020 03:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34262 * 126.29376 * 2 1 4 4 H 0.96997 * 125.75279 * 0.03493 * 3 2 1 5 5 N 1.39932 * 108.49290 * 180.24267 * 3 2 1 6 6 C 1.30451 * 108.89990 * 359.75575 * 5 3 2 7 7 C 1.50690 * 125.99380 * 179.97438 * 6 5 3 8 8 C 1.53007 * 109.47365 * 299.99888 * 7 6 5 9 9 C 1.53000 * 109.47131 * 59.99696 * 7 6 5 10 10 C 1.38047 * 126.28969 * 179.82432 * 2 1 3 11 11 C 1.47420 * 126.41545 * 0.02562 * 10 2 1 12 12 O 1.21601 * 120.00740 * 269.68864 * 11 10 2 13 13 N 1.34783 * 120.00133 * 89.68681 * 11 10 2 14 14 C 1.49216 * 126.05410 * 0.04524 * 13 11 10 15 15 C 1.50318 * 104.32835 * 172.12543 * 14 13 11 16 16 H 1.09005 * 110.86007 * 279.87469 * 15 14 13 17 17 C 1.51009 * 124.69977 * 145.19016 * 15 14 13 18 18 C 1.56736 * 101.64490 * 204.37339 * 17 15 14 19 19 C 1.55940 * 105.62979 * 24.94836 * 18 17 15 20 20 H 1.08997 * 110.49404 * 126.35863 * 19 18 17 21 21 N 1.46498 * 110.49243 * 248.88759 * 19 18 17 22 22 C 1.36943 * 119.99752 * 271.46149 * 21 19 18 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 19 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 19 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 C 1.50290 * 104.27543 * 7.62137 * 19 18 17 31 31 H 1.09003 * 109.99583 * 80.41289 * 30 19 18 32 32 C 1.49700 * 126.06324 * 179.97438 * 13 11 10 33 33 H 1.09001 * 109.46963 * 270.17646 * 1 2 3 34 34 H 1.09002 * 109.47088 * 30.17379 * 1 2 3 35 35 H 1.08996 * 109.47536 * 150.17540 * 1 2 3 36 36 H 1.09002 * 109.47528 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.46940 * 59.99465 * 8 7 6 38 38 H 1.08990 * 109.47226 * 179.97438 * 8 7 6 39 39 H 1.08999 * 109.46376 * 300.00316 * 8 7 6 40 40 H 1.08994 * 109.47216 * 60.00000 * 9 7 6 41 41 H 1.09006 * 109.47163 * 180.02562 * 9 7 6 42 42 H 1.08999 * 109.47458 * 299.99862 * 9 7 6 43 43 H 1.09001 * 110.36024 * 291.74166 * 14 13 11 44 44 H 1.08999 * 110.36548 * 53.94720 * 14 13 11 45 45 H 1.08993 * 110.99790 * 322.41981 * 17 15 14 46 46 H 1.09003 * 111.00108 * 86.22621 * 17 15 14 47 47 H 1.09001 * 110.24821 * 265.92581 * 18 17 15 48 48 H 1.08998 * 110.27380 * 143.98693 * 18 17 15 49 49 H 0.97001 * 120.00384 * 91.74505 * 21 19 18 50 50 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 51 51 H 1.09003 * 110.83845 * 36.70784 * 32 13 11 52 52 H 1.08994 * 111.01812 * 273.17497 * 32 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0027 2.0049 0.0005 5 7 3.6340 0.6544 -0.0056 6 6 3.6591 -0.6499 -0.0037 7 6 4.8950 -1.5120 -0.0088 8 6 5.7195 -1.2141 -1.2628 9 6 5.7324 -1.2101 1.2357 10 6 2.3240 -1.1127 0.0034 11 6 1.8858 -2.5202 0.0072 12 8 1.7100 -3.0996 1.0618 13 7 1.6797 -3.1651 -1.1583 14 6 1.8541 -2.5888 -2.5236 15 6 1.6925 -3.7639 -3.4469 16 1 2.6115 -4.3481 -3.4961 17 6 1.0543 -3.7017 -4.8140 18 6 0.5821 -5.1833 -5.0105 19 6 0.4018 -5.7608 -3.5732 20 1 -0.5956 -6.1842 -3.4545 21 7 1.4237 -6.7731 -3.2954 22 6 1.1958 -8.0835 -3.6212 23 1 0.2645 -8.3700 -4.0872 24 6 2.1617 -9.0436 -3.3527 25 7 3.2964 -8.6945 -2.7844 26 14 1.8511 -10.8310 -3.7979 27 1 0.5097 -10.9598 -4.4218 28 1 2.8884 -11.2899 -4.7564 29 1 1.9085 -11.6641 -2.5699 30 6 0.5797 -4.5721 -2.6711 31 1 -0.3421 -3.9916 -2.6332 32 6 1.2369 -4.5868 -1.3126 33 1 -0.3633 0.0032 1.0277 34 1 -0.3633 0.8884 -0.5165 35 1 -0.3634 -0.8915 -0.5111 36 1 4.6052 -2.5627 -0.0052 37 1 6.0093 -0.1634 -1.2660 38 1 6.6137 -1.8373 -1.2662 39 1 5.1229 -1.4291 -2.1493 40 1 5.1451 -1.4223 2.1290 41 1 6.6267 -1.8334 1.2318 42 1 6.0223 -0.1594 1.2325 43 1 1.0960 -1.8290 -2.7141 44 1 2.8518 -2.1634 -2.6312 45 1 0.2052 -3.0183 -4.8179 46 1 1.7837 -3.4195 -5.5732 47 1 1.3383 -5.7515 -5.5521 48 1 -0.3657 -5.2095 -5.5481 49 1 2.2601 -6.5159 -2.8768 50 1 3.9715 -9.3653 -2.5971 51 1 0.5193 -4.8556 -0.5374 52 1 2.0898 -5.2653 -1.3014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026399852.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:16 Heat of formation + Delta-G solvation = 52.716576 kcal Electronic energy + Delta-G solvation = -31962.323807 eV Core-core repulsion = 27963.481651 eV Total energy + Delta-G solvation = -3998.842156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.67081 -40.28013 -38.19279 -35.87575 -35.10467 -33.27160 -32.34679 -31.11982 -30.82006 -29.23426 -28.43066 -27.40946 -27.19801 -25.45962 -23.62868 -23.39790 -23.21926 -21.51429 -19.93601 -19.19534 -18.94020 -18.74820 -17.61001 -17.46401 -16.36665 -16.03827 -15.20275 -15.07421 -14.84444 -14.63637 -14.45649 -14.32441 -14.21518 -13.71590 -13.54115 -13.49492 -13.16077 -12.88212 -12.83950 -12.78928 -12.48609 -12.21633 -12.19576 -11.83295 -11.58790 -11.48822 -11.29218 -11.17941 -11.14453 -10.94657 -10.83429 -10.68893 -10.60697 -10.48490 -10.24991 -10.04509 -9.79130 -9.60180 -9.54229 -9.50405 -8.91068 -8.72612 -8.43009 -6.96046 -5.76612 -3.05471 1.52346 2.31566 2.49987 2.75783 3.20384 3.43992 3.49888 3.52039 4.19513 4.24583 4.43897 4.59885 4.65714 4.86813 4.89268 5.00075 5.08512 5.13098 5.16541 5.31865 5.37623 5.38677 5.49587 5.52383 5.56404 5.60012 5.61322 5.64073 5.69446 5.77794 5.82588 5.84048 5.85715 5.94476 5.96757 6.06593 6.14379 6.17984 6.18739 6.29525 6.30432 6.39015 6.42224 6.50980 6.55518 6.68550 6.84705 6.96772 7.06340 7.43503 7.71107 7.72544 8.37341 8.41864 9.53360 10.09795 10.44252 11.45827 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.003050 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.599992 B = 9178.990697 C = 9955.968266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.125 3.875 3 N -0.466 5.466 4 H 0.440 0.560 5 N -0.290 5.290 6 C 0.128 3.872 7 C -0.020 4.020 8 C -0.141 4.141 9 C -0.141 4.141 10 C -0.268 4.268 11 C 0.609 3.391 12 O -0.538 6.538 13 N -0.615 5.615 14 C 0.129 3.871 15 C -0.128 4.128 16 H 0.091 0.909 17 C -0.096 4.096 18 C -0.145 4.145 19 C 0.194 3.806 20 H 0.055 0.945 21 N -0.718 5.718 22 C -0.240 4.240 23 H 0.071 0.929 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.292 1.292 30 C -0.119 4.119 31 H 0.074 0.926 32 C 0.130 3.870 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.076 0.924 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 22.260 1.725 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.006 4.006 3 N -0.172 5.172 4 H 0.284 0.716 5 N -0.112 5.112 6 C -0.039 4.039 7 C -0.041 4.041 8 C -0.199 4.199 9 C -0.199 4.199 10 C -0.283 4.283 11 C 0.396 3.604 12 O -0.414 6.414 13 N -0.350 5.350 14 C 0.007 3.993 15 C -0.147 4.147 16 H 0.110 0.890 17 C -0.135 4.135 18 C -0.185 4.185 19 C 0.083 3.917 20 H 0.073 0.927 21 N -0.360 5.360 22 C -0.371 4.371 23 H 0.089 0.911 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.219 1.219 30 C -0.139 4.139 31 H 0.093 0.907 32 C 0.010 3.990 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.071 0.929 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.095 0.905 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.280 22.860 2.337 23.092 hybrid contribution -0.497 -1.038 -0.184 1.165 sum -2.776 21.822 2.153 22.103 Atomic orbital electron populations 1.20550 0.86603 1.04310 1.04123 1.21308 0.94350 0.86738 0.98244 1.45955 1.04148 1.08085 1.59000 0.71619 1.77030 0.95470 1.12496 1.26185 1.22255 0.94043 0.91030 0.96621 1.19705 0.89873 0.97527 0.96993 1.21807 0.99641 1.02132 0.96276 1.21792 0.99454 1.02046 0.96578 1.19881 0.92975 0.93345 1.22109 1.16894 0.76700 0.84436 0.82398 1.90795 1.51914 1.68163 1.30553 1.49850 1.66671 1.13347 1.05125 1.21189 1.00941 0.95626 0.81549 1.22257 1.00543 0.96524 0.95411 0.89033 1.21770 0.99021 0.98021 0.94653 1.23914 1.00601 0.93822 1.00204 1.20130 0.93856 0.87449 0.90290 0.92720 1.42443 1.17247 1.03402 1.72868 1.19281 1.00739 0.84071 1.32981 0.91105 1.24724 0.96530 0.97967 1.01539 1.69661 1.07280 1.32841 1.48123 0.86158 0.77211 0.85509 0.77535 1.20606 1.21980 1.21914 1.22459 0.97609 0.99470 0.94370 0.90725 1.21470 0.99880 0.80870 0.96797 0.89421 0.90467 0.89323 0.89260 0.92088 0.91651 0.92448 0.92411 0.91737 0.92121 0.91842 0.91573 0.92209 0.92161 0.90559 0.92923 0.78098 0.93549 0.90510 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.25 36.00 0.37 -0.36 16 2 C 0.13 1.33 7.29 -81.60 -0.60 0.73 16 3 N -0.47 -4.41 7.29 33.86 0.25 -4.16 16 4 H 0.44 2.52 8.96 -182.73 -1.64 0.88 16 5 N -0.29 -3.56 12.63 33.89 0.43 -3.13 16 6 C 0.13 1.69 5.77 -82.02 -0.47 1.22 16 7 C -0.02 -0.25 3.31 -91.77 -0.30 -0.56 16 8 C -0.14 -1.50 9.18 37.16 0.34 -1.16 16 9 C -0.14 -1.56 9.18 37.16 0.34 -1.21 16 10 C -0.27 -3.68 5.10 -105.07 -0.54 -4.22 16 11 C 0.61 9.93 6.73 -12.52 -0.08 9.84 16 12 O -0.54 -10.82 17.44 5.28 0.09 -10.73 16 13 N -0.62 -9.29 3.43 -172.84 -0.59 -9.88 16 14 C 0.13 1.63 6.39 -3.87 -0.02 1.61 16 15 C -0.13 -1.80 2.71 -90.27 -0.24 -2.04 16 16 H 0.09 1.52 7.67 -51.93 -0.40 1.13 16 17 C -0.10 -1.24 6.71 -25.71 -0.17 -1.41 16 18 C -0.14 -2.30 6.76 -23.14 -0.16 -2.46 16 19 C 0.19 3.55 3.45 -67.71 -0.23 3.32 16 20 H 0.05 1.03 8.10 -51.93 -0.42 0.61 16 21 N -0.72 -16.81 4.83 -53.21 -0.26 -17.06 16 22 C -0.24 -6.37 9.96 -15.06 -0.15 -6.52 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 26 Si 0.90 22.04 29.55 -169.99 -5.02 17.02 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 C -0.12 -1.84 2.63 -90.33 -0.24 -2.08 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 C 0.13 2.22 6.48 -3.30 -0.02 2.20 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.75 7.96 -51.93 -0.41 0.33 16 36 H 0.09 1.25 7.56 -51.93 -0.39 0.85 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 1.41 7.98 -51.93 -0.41 1.00 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.38 9.61 6.12 -40.82 -0.25 9.36 16 50 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 51 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 52 H 0.09 1.69 6.89 -51.93 -0.36 1.33 16 LS Contribution 416.42 15.07 6.28 6.28 Total: -1.00 -32.75 416.42 -10.55 -43.31 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -10.17 Total: 8.60 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.28 Total: -3.51 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.55 Total: -60.95 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.75 -10.55 -43.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026399852.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.022 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds