Wall clock time and date at job start Wed Apr 1 2020 03:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34262 * 126.29376 * 2 1 4 4 H 0.96997 * 125.75279 * 0.03493 * 3 2 1 5 5 N 1.39932 * 108.49290 * 180.24267 * 3 2 1 6 6 C 1.30451 * 108.89990 * 359.75575 * 5 3 2 7 7 C 1.50690 * 125.99380 * 179.97438 * 6 5 3 8 8 C 1.53007 * 109.47365 * 299.99888 * 7 6 5 9 9 C 1.53000 * 109.47131 * 59.99696 * 7 6 5 10 10 C 1.38047 * 126.28969 * 179.82432 * 2 1 3 11 11 C 1.47420 * 126.41545 * 0.02562 * 10 2 1 12 12 O 1.21601 * 120.00740 * 269.68864 * 11 10 2 13 13 N 1.34783 * 120.00133 * 89.68681 * 11 10 2 14 14 C 1.49216 * 126.05410 * 0.04524 * 13 11 10 15 15 C 1.50318 * 104.32835 * 172.12543 * 14 13 11 16 16 H 1.09005 * 110.86007 * 279.87469 * 15 14 13 17 17 C 1.51009 * 124.69977 * 145.19016 * 15 14 13 18 18 C 1.56736 * 101.64490 * 204.37339 * 17 15 14 19 19 C 1.55940 * 105.62979 * 24.94836 * 18 17 15 20 20 H 1.08997 * 110.49404 * 126.35863 * 19 18 17 21 21 N 1.46498 * 110.49243 * 248.88759 * 19 18 17 22 22 C 1.36943 * 119.99752 * 271.46149 * 21 19 18 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 19 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 19 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 C 1.50290 * 104.27543 * 7.62137 * 19 18 17 31 31 H 1.09003 * 109.99583 * 80.41289 * 30 19 18 32 32 C 1.49700 * 126.06324 * 179.97438 * 13 11 10 33 33 H 1.09001 * 109.46963 * 270.17646 * 1 2 3 34 34 H 1.09002 * 109.47088 * 30.17379 * 1 2 3 35 35 H 1.08996 * 109.47536 * 150.17540 * 1 2 3 36 36 H 1.09002 * 109.47528 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.46940 * 59.99465 * 8 7 6 38 38 H 1.08990 * 109.47226 * 179.97438 * 8 7 6 39 39 H 1.08999 * 109.46376 * 300.00316 * 8 7 6 40 40 H 1.08994 * 109.47216 * 60.00000 * 9 7 6 41 41 H 1.09006 * 109.47163 * 180.02562 * 9 7 6 42 42 H 1.08999 * 109.47458 * 299.99862 * 9 7 6 43 43 H 1.09001 * 110.36024 * 291.74166 * 14 13 11 44 44 H 1.08999 * 110.36548 * 53.94720 * 14 13 11 45 45 H 1.08993 * 110.99790 * 322.41981 * 17 15 14 46 46 H 1.09003 * 111.00108 * 86.22621 * 17 15 14 47 47 H 1.09001 * 110.24821 * 265.92581 * 18 17 15 48 48 H 1.08998 * 110.27380 * 143.98693 * 18 17 15 49 49 H 0.97001 * 120.00384 * 91.74505 * 21 19 18 50 50 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 51 51 H 1.09003 * 110.83845 * 36.70784 * 32 13 11 52 52 H 1.08994 * 111.01812 * 273.17497 * 32 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0027 2.0049 0.0005 5 7 3.6340 0.6544 -0.0056 6 6 3.6591 -0.6499 -0.0037 7 6 4.8950 -1.5120 -0.0088 8 6 5.7195 -1.2141 -1.2628 9 6 5.7324 -1.2101 1.2357 10 6 2.3240 -1.1127 0.0034 11 6 1.8858 -2.5202 0.0072 12 8 1.7100 -3.0996 1.0618 13 7 1.6797 -3.1651 -1.1583 14 6 1.8541 -2.5888 -2.5236 15 6 1.6925 -3.7639 -3.4469 16 1 2.6115 -4.3481 -3.4961 17 6 1.0543 -3.7017 -4.8140 18 6 0.5821 -5.1833 -5.0105 19 6 0.4018 -5.7608 -3.5732 20 1 -0.5956 -6.1842 -3.4545 21 7 1.4237 -6.7731 -3.2954 22 6 1.1958 -8.0835 -3.6212 23 1 0.2645 -8.3700 -4.0872 24 6 2.1617 -9.0436 -3.3527 25 7 3.2964 -8.6945 -2.7844 26 14 1.8511 -10.8310 -3.7979 27 1 0.5097 -10.9598 -4.4218 28 1 2.8884 -11.2899 -4.7564 29 1 1.9085 -11.6641 -2.5699 30 6 0.5797 -4.5721 -2.6711 31 1 -0.3421 -3.9916 -2.6332 32 6 1.2369 -4.5868 -1.3126 33 1 -0.3633 0.0032 1.0277 34 1 -0.3633 0.8884 -0.5165 35 1 -0.3634 -0.8915 -0.5111 36 1 4.6052 -2.5627 -0.0052 37 1 6.0093 -0.1634 -1.2660 38 1 6.6137 -1.8373 -1.2662 39 1 5.1229 -1.4291 -2.1493 40 1 5.1451 -1.4223 2.1290 41 1 6.6267 -1.8334 1.2318 42 1 6.0223 -0.1594 1.2325 43 1 1.0960 -1.8290 -2.7141 44 1 2.8518 -2.1634 -2.6312 45 1 0.2052 -3.0183 -4.8179 46 1 1.7837 -3.4195 -5.5732 47 1 1.3383 -5.7515 -5.5521 48 1 -0.3657 -5.2095 -5.5481 49 1 2.2601 -6.5159 -2.8768 50 1 3.9715 -9.3653 -2.5971 51 1 0.5193 -4.8556 -0.5374 52 1 2.0898 -5.2653 -1.3014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026399852.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:15 Heat of formation + Delta-G solvation = 31.889017 kcal Electronic energy + Delta-G solvation = -31963.226957 eV Core-core repulsion = 27963.481651 eV Total energy + Delta-G solvation = -3999.745306 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.60899 -41.53324 -39.52367 -36.78266 -36.62205 -34.99374 -33.15269 -32.56391 -32.11771 -30.48385 -29.84410 -28.23601 -28.08046 -26.95171 -25.14338 -24.78087 -24.29195 -22.61276 -21.10674 -20.31373 -20.11027 -19.89549 -19.38361 -18.58986 -17.55577 -17.38152 -16.68377 -16.07861 -16.00699 -15.78715 -15.71095 -15.67208 -15.38275 -15.11721 -14.84556 -14.66921 -14.27995 -14.06198 -13.79707 -13.60848 -13.56290 -13.30943 -13.22632 -13.11377 -13.04630 -12.87344 -12.64697 -12.50408 -12.33700 -12.19722 -12.15356 -12.07188 -12.01874 -11.82753 -11.62636 -11.49768 -11.38035 -11.06998 -10.88978 -10.80951 -10.40486 -9.73152 -9.66842 -8.93435 -7.89742 -5.16682 0.67029 1.31060 1.48645 1.49431 1.50337 1.58782 1.71172 2.04058 2.59472 3.01015 3.33659 3.44880 3.54197 3.78889 3.81428 3.90178 4.02075 4.07002 4.14877 4.16611 4.27007 4.30322 4.36802 4.44665 4.45716 4.51620 4.60616 4.64020 4.69342 4.75506 4.75836 4.85859 4.87903 4.90434 4.92846 4.97618 4.98592 5.05111 5.07729 5.12120 5.21839 5.23931 5.25272 5.30405 5.41537 5.42623 5.48741 5.58259 5.71768 6.27818 6.33002 6.48908 6.56322 7.10701 7.39129 8.17180 8.38440 9.33899 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.003050 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.599992 B = 9178.990697 C = 9955.968266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.148 3.852 3 N -0.446 5.446 4 H 0.458 0.542 5 N -0.301 5.301 6 C 0.120 3.880 7 C -0.025 4.025 8 C -0.133 4.133 9 C -0.135 4.135 10 C -0.306 4.306 11 C 0.612 3.388 12 O -0.588 6.588 13 N -0.610 5.610 14 C 0.136 3.864 15 C -0.114 4.114 16 H 0.056 0.944 17 C -0.081 4.081 18 C -0.138 4.138 19 C 0.182 3.818 20 H 0.051 0.949 21 N -0.730 5.730 22 C -0.231 4.231 23 H 0.077 0.923 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.966 3.034 27 H -0.265 1.265 28 H -0.296 1.296 29 H -0.299 1.299 30 C -0.115 4.115 31 H 0.106 0.894 32 C 0.134 3.866 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.372 0.628 50 H 0.248 0.752 51 H 0.062 0.938 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 25.519 0.135 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.014 3.986 3 N -0.155 5.155 4 H 0.307 0.693 5 N -0.123 5.123 6 C -0.047 4.047 7 C -0.045 4.045 8 C -0.191 4.191 9 C -0.193 4.193 10 C -0.320 4.320 11 C 0.401 3.599 12 O -0.469 6.469 13 N -0.343 5.343 14 C 0.015 3.985 15 C -0.133 4.133 16 H 0.074 0.926 17 C -0.119 4.119 18 C -0.178 4.178 19 C 0.073 3.927 20 H 0.069 0.931 21 N -0.371 5.371 22 C -0.363 4.363 23 H 0.095 0.905 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.796 3.204 27 H -0.189 1.189 28 H -0.224 1.224 29 H -0.227 1.227 30 C -0.135 4.135 31 H 0.124 0.876 32 C 0.012 3.988 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.091 0.909 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.205 0.795 50 H 0.056 0.944 51 H 0.081 0.919 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.287 26.191 0.689 26.548 hybrid contribution 0.038 -1.987 0.338 2.016 sum -4.250 24.204 1.027 24.596 Atomic orbital electron populations 1.20715 0.84011 1.05833 1.05021 1.21669 0.95635 0.85803 0.95477 1.45956 1.03155 1.08929 1.57410 0.69333 1.76977 0.96969 1.11736 1.26641 1.22286 0.93983 0.91477 0.97001 1.19699 0.90458 0.96004 0.98370 1.21750 0.99519 1.02705 0.95125 1.21750 0.99448 1.02760 0.95360 1.19759 0.93995 0.92475 1.25816 1.17292 0.75509 0.85398 0.81704 1.90756 1.54159 1.69590 1.32357 1.49865 1.65945 1.12315 1.06212 1.21299 1.02459 0.95410 0.79326 1.22157 0.98433 0.96284 0.96421 0.92585 1.21727 1.00374 0.96216 0.93607 1.23709 1.00902 0.95532 0.97666 1.20450 0.92118 0.87375 0.92746 0.93076 1.42627 1.17951 1.03638 1.72849 1.19672 1.00329 0.85471 1.30807 0.90471 1.25469 0.96748 1.01787 1.02871 1.69825 1.08302 1.33548 1.50484 0.85167 0.77528 0.80957 0.76709 1.18878 1.22398 1.22713 1.22317 0.99347 0.98790 0.93007 0.87614 1.21207 0.98188 0.81759 0.97676 0.88775 0.86619 0.90037 0.92041 0.91302 0.90896 0.92863 0.93882 0.90562 0.91278 0.88386 0.91114 0.88603 0.90887 0.93683 0.90676 0.79506 0.94362 0.91904 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 10.25 71.23 0.73 -0.36 16 2 C 0.15 2.74 7.29 42.14 0.31 3.04 16 3 N -0.45 -7.07 7.29 -46.79 -0.34 -7.41 16 4 H 0.46 3.46 8.96 -213.43 -1.91 1.55 16 5 N -0.30 -6.81 12.63 -46.68 -0.59 -7.40 16 6 C 0.12 3.09 5.77 43.51 0.25 3.35 16 7 C -0.02 -0.62 3.31 -11.54 -0.04 -0.66 16 8 C -0.13 -2.78 9.18 71.98 0.66 -2.12 16 9 C -0.14 -3.03 9.18 71.98 0.66 -2.37 16 10 C -0.31 -8.15 5.10 -20.15 -0.10 -8.25 16 11 C 0.61 20.37 6.73 86.66 0.58 20.95 16 12 O -0.59 -24.92 17.44 -4.03 -0.07 -24.99 16 13 N -0.61 -18.54 3.43 -818.98 -2.81 -21.35 16 14 C 0.14 3.17 6.39 84.99 0.54 3.71 16 15 C -0.11 -3.03 2.71 -10.57 -0.03 -3.06 16 16 H 0.06 1.91 7.67 -2.38 -0.02 1.89 16 17 C -0.08 -1.81 6.71 31.25 0.21 -1.60 16 18 C -0.14 -4.14 6.76 32.92 0.22 -3.92 16 19 C 0.18 6.61 3.45 45.13 0.16 6.76 16 20 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 21 N -0.73 -35.35 4.83 -322.26 -1.56 -36.91 16 22 C -0.23 -12.51 9.96 84.03 0.84 -11.67 16 23 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 24 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 25 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 26 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 27 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 28 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 29 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 30 C -0.11 -3.46 2.63 -10.60 -0.03 -3.49 16 31 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 32 C 0.13 4.76 6.48 85.08 0.55 5.31 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 1.10 7.96 -2.39 -0.02 1.08 16 36 H 0.06 1.86 7.56 -2.39 -0.02 1.84 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.04 1.64 7.98 -2.39 -0.02 1.63 16 48 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.37 19.75 6.12 -92.71 -0.57 19.18 16 50 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 51 H 0.06 2.37 8.10 -2.39 -0.02 2.35 16 52 H 0.05 2.01 6.89 -2.39 -0.02 2.00 16 Total: -1.00 -76.03 416.42 1.37 -74.65 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -1.55 Total: 32.80 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 5.98 Total: 1.70 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -5.01 Total: -132.59 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.07 Total: -24.99 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -76.03 1.37 -74.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026399852.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.540 kcal (2) G-P(sol) polarization free energy of solvation -76.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds