Wall clock time and date at job start Wed Apr 1 2020 03:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34264 * 126.29313 * 2 1 4 4 H 0.97003 * 125.74929 * 0.27130 * 3 2 1 5 5 N 1.39934 * 108.49057 * 180.26364 * 3 2 1 6 6 C 1.30444 * 108.89885 * 0.02562 * 5 3 2 7 7 C 1.50698 * 125.98714 * 179.97438 * 6 5 3 8 8 C 1.53004 * 109.47033 * 300.02512 * 7 6 5 9 9 C 1.52999 * 109.47501 * 60.02668 * 7 6 5 10 10 C 1.38042 * 126.29099 * 180.31606 * 2 1 3 11 11 C 1.47430 * 126.41347 * 359.73534 * 10 2 1 12 12 O 1.21607 * 120.00056 * 89.98052 * 11 10 2 13 13 N 1.34776 * 120.00236 * 269.97511 * 11 10 2 14 14 C 1.48353 * 128.19193 * 359.68171 * 13 11 10 15 15 C 1.54907 * 104.07156 * 138.26142 * 14 13 11 16 16 H 1.09000 * 112.55008 * 263.89851 * 15 14 13 17 17 C 1.55453 * 109.07499 * 138.46812 * 15 14 13 18 18 C 1.53956 * 106.11774 * 228.94414 * 17 15 14 19 19 C 1.53958 * 104.88875 * 29.97723 * 18 17 15 20 20 H 1.08998 * 110.19441 * 211.26706 * 19 18 17 21 21 N 1.46505 * 110.13974 * 89.57564 * 19 18 17 22 22 C 1.36936 * 119.99675 * 138.42037 * 21 19 18 23 23 H 1.08004 * 119.99927 * 0.02562 * 22 21 19 24 24 C 1.38803 * 120.00240 * 179.97438 * 22 21 19 25 25 N 1.31625 * 119.99911 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00290 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47030 * 90.00106 * 26 24 22 28 28 H 1.48498 * 109.46973 * 209.99927 * 26 24 22 29 29 H 1.48502 * 109.47068 * 330.00012 * 26 24 22 30 30 C 1.53563 * 106.02904 * 330.43825 * 19 18 17 31 31 H 1.09001 * 111.65633 * 254.94401 * 30 19 18 32 32 C 1.48343 * 128.19627 * 180.02562 * 13 11 10 33 33 H 1.08997 * 109.47255 * 269.68442 * 1 2 3 34 34 H 1.09004 * 109.47234 * 29.68813 * 1 2 3 35 35 H 1.08994 * 109.47404 * 149.68215 * 1 2 3 36 36 H 1.08997 * 109.47121 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.46782 * 60.00265 * 8 7 6 38 38 H 1.09007 * 109.46929 * 179.97438 * 8 7 6 39 39 H 1.09000 * 109.47427 * 300.00265 * 8 7 6 40 40 H 1.08998 * 109.47232 * 180.02562 * 9 7 6 41 41 H 1.09008 * 109.46527 * 300.00045 * 9 7 6 42 42 H 1.09004 * 109.46790 * 59.99578 * 9 7 6 43 43 H 1.08994 * 110.46881 * 257.00190 * 14 13 11 44 44 H 1.08999 * 110.46893 * 19.59708 * 14 13 11 45 45 H 1.09001 * 109.75455 * 109.95836 * 17 15 14 46 46 H 1.09005 * 110.50135 * 348.33554 * 17 15 14 47 47 H 1.08998 * 110.35926 * 271.12002 * 18 17 15 48 48 H 1.09001 * 110.44303 * 148.87004 * 18 17 15 49 49 H 0.96993 * 120.00057 * 318.42309 * 21 19 18 50 50 H 0.96997 * 119.99820 * 179.97438 * 25 24 22 51 51 H 1.09003 * 110.47224 * 340.40180 * 32 13 11 52 52 H 1.08999 * 110.47275 * 103.00300 * 32 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0026 2.0049 0.0037 5 7 3.6340 0.6543 -0.0061 6 6 3.6590 -0.6499 -0.0103 7 6 4.8950 -1.5119 -0.0180 8 6 5.7212 -1.2076 -1.2693 9 6 5.7307 -1.2165 1.2291 10 6 2.3240 -1.1126 -0.0061 11 6 1.8857 -2.5203 -0.0084 12 8 1.7007 -3.0978 -1.0625 13 7 1.6902 -3.1671 1.1577 14 6 1.8659 -2.6469 2.5359 15 6 0.6455 -3.2069 3.3082 16 1 -0.1766 -2.4934 3.3649 17 6 1.1095 -3.6876 4.7118 18 6 0.5302 -5.1026 4.8921 19 6 0.4549 -5.6835 3.4683 20 1 -0.3838 -6.3750 3.3880 21 7 1.7066 -6.3686 3.1362 22 6 1.6765 -7.5648 2.4704 23 1 0.7301 -8.0030 2.1897 24 6 2.8623 -8.2137 2.1552 25 7 4.0158 -7.6790 2.4958 26 14 2.8214 -9.8452 1.2462 27 1 2.8576 -9.5974 -0.2175 28 1 3.9985 -10.6606 1.6395 29 1 1.5754 -10.5745 1.5941 30 6 0.2436 -4.4849 2.5319 31 1 -0.7836 -4.4324 2.1712 32 6 1.2551 -4.5698 1.3668 33 1 -0.3633 -0.0057 1.0276 34 1 -0.3634 0.8928 -0.5090 35 1 -0.3634 -0.8871 -0.5187 36 1 4.6052 -2.5626 -0.0206 37 1 6.0110 -0.1569 -1.2667 38 1 6.6156 -1.8308 -1.2746 39 1 5.1259 -1.4180 -2.1578 40 1 6.6249 -1.8396 1.2233 41 1 6.0205 -0.1656 1.2317 42 1 5.1420 -1.4332 2.1206 43 1 2.7958 -3.0172 2.9674 44 1 1.8517 -1.5570 2.5366 45 1 0.7157 -3.0204 5.4786 46 1 2.1978 -3.7180 4.7644 47 1 -0.4649 -5.0515 5.3339 48 1 1.1899 -5.7077 5.5140 49 1 2.5565 -5.9749 3.3879 50 1 4.8445 -8.1326 2.2759 51 1 0.7717 -4.9568 0.4697 52 1 2.1039 -5.1951 1.6435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026399853.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:20 Heat of formation + Delta-G solvation = 45.424208 kcal Electronic energy + Delta-G solvation = -32490.688468 eV Core-core repulsion = 28491.530092 eV Total energy + Delta-G solvation = -3999.158376 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.53859 -39.76936 -37.89329 -35.74859 -34.82112 -33.32086 -32.22756 -30.96861 -30.83790 -29.01609 -28.16935 -27.32962 -27.07690 -25.10256 -23.96650 -23.27382 -23.17304 -21.41755 -19.76713 -19.07004 -18.62663 -18.46151 -17.48045 -17.45545 -16.42667 -15.42418 -15.33213 -15.13058 -14.78998 -14.76096 -14.45116 -14.18438 -13.86921 -13.50809 -13.39123 -13.22612 -13.16280 -12.73577 -12.69311 -12.64010 -12.44826 -12.16293 -12.10159 -11.69805 -11.44956 -11.24946 -11.16806 -11.02496 -10.95456 -10.80445 -10.68826 -10.55033 -10.45564 -10.23329 -10.19510 -10.05393 -9.87677 -9.60592 -9.49366 -9.42094 -8.97706 -8.59187 -8.14403 -6.94047 -5.80128 -3.09455 1.63035 2.45452 2.60831 2.96732 3.45271 3.50780 3.52013 3.55032 4.32413 4.54173 4.58395 4.76092 4.79272 4.90217 4.99106 5.09196 5.17708 5.20667 5.22426 5.41030 5.51981 5.54897 5.61126 5.63148 5.65342 5.69905 5.71525 5.77140 5.79616 5.88876 5.94788 5.98403 6.05748 6.09358 6.09996 6.15391 6.24656 6.27881 6.30047 6.36378 6.43666 6.48565 6.57147 6.68276 6.71287 6.91402 6.94564 7.07247 7.28805 7.54676 7.70708 8.07350 8.37987 8.62182 9.50159 10.04014 10.38847 11.41513 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010724 B = 0.003893 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.435778 B = 7190.027537 C = 8329.310820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.122 3.878 3 N -0.467 5.467 4 H 0.439 0.561 5 N -0.292 5.292 6 C 0.128 3.872 7 C -0.021 4.021 8 C -0.140 4.140 9 C -0.139 4.139 10 C -0.265 4.265 11 C 0.610 3.390 12 O -0.544 6.544 13 N -0.611 5.611 14 C 0.114 3.886 15 C -0.099 4.099 16 H 0.076 0.924 17 C -0.111 4.111 18 C -0.134 4.134 19 C 0.178 3.822 20 H 0.062 0.938 21 N -0.710 5.710 22 C -0.247 4.247 23 H 0.072 0.928 24 C -0.006 4.006 25 N -0.929 5.929 26 Si 0.903 3.097 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.282 1.282 30 C -0.124 4.124 31 H 0.068 0.932 32 C 0.103 3.897 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.385 0.615 50 H 0.256 0.744 51 H 0.065 0.935 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 18.823 0.969 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.010 4.010 3 N -0.174 5.174 4 H 0.283 0.717 5 N -0.114 5.114 6 C -0.039 4.039 7 C -0.041 4.041 8 C -0.198 4.198 9 C -0.197 4.197 10 C -0.280 4.280 11 C 0.396 3.604 12 O -0.421 6.421 13 N -0.343 5.343 14 C -0.009 4.009 15 C -0.119 4.119 16 H 0.095 0.905 17 C -0.149 4.149 18 C -0.173 4.173 19 C 0.067 3.933 20 H 0.080 0.920 21 N -0.351 5.351 22 C -0.378 4.378 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.577 5.577 26 Si 0.734 3.266 27 H -0.216 1.216 28 H -0.219 1.219 29 H -0.208 1.208 30 C -0.146 4.146 31 H 0.087 0.913 32 C -0.018 4.018 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.220 0.780 50 H 0.066 0.934 51 H 0.084 0.916 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.254 19.409 0.211 19.871 hybrid contribution -0.461 -0.819 -0.434 1.035 sum -4.715 18.591 -0.222 19.180 Atomic orbital electron populations 1.20536 0.86678 1.04438 1.03854 1.21300 0.94326 0.86759 0.98577 1.45951 1.04179 1.08014 1.59208 0.71734 1.77015 0.95441 1.12550 1.26350 1.22272 0.94148 0.90982 0.96504 1.19706 0.89829 0.97694 0.96902 1.21786 0.99535 1.01903 0.96572 1.21788 0.99592 1.01915 0.96429 1.19950 0.92919 0.93579 1.21504 1.16801 0.76982 0.84223 0.82361 1.90781 1.52472 1.68284 1.30576 1.49215 1.65563 1.14779 1.04744 1.22613 0.98351 0.98096 0.81846 1.22948 0.96520 0.97338 0.95086 0.90541 1.22416 1.00788 0.96708 0.95026 1.22598 1.00098 0.95577 0.99013 1.20696 0.90812 0.91494 0.90345 0.91958 1.42519 1.02489 1.22668 1.67378 1.19260 0.92664 0.96866 1.28968 0.91050 1.24701 0.95315 0.98932 1.01346 1.69642 0.96643 1.39730 1.51639 0.86252 0.76833 0.83713 0.79776 1.21583 1.21852 1.20782 1.23239 0.98200 0.96077 0.97116 0.91316 1.23212 1.00915 0.80595 0.97080 0.89588 0.90610 0.89184 0.89102 0.92209 0.91764 0.92471 0.91671 0.92238 0.92415 0.90679 0.91784 0.92714 0.91446 0.92465 0.91018 0.78004 0.93421 0.91592 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.25 36.00 0.37 -0.47 16 2 C 0.12 1.46 7.29 -81.60 -0.60 0.86 16 3 N -0.47 -4.96 7.29 33.86 0.25 -4.72 16 4 H 0.44 2.96 8.96 -182.72 -1.64 1.33 16 5 N -0.29 -3.94 12.63 33.89 0.43 -3.51 16 6 C 0.13 1.90 5.77 -82.02 -0.47 1.42 16 7 C -0.02 -0.29 3.31 -91.77 -0.30 -0.60 16 8 C -0.14 -1.75 9.18 37.16 0.34 -1.41 16 9 C -0.14 -1.70 9.18 37.16 0.34 -1.36 16 10 C -0.26 -4.07 4.80 -105.07 -0.50 -4.58 16 11 C 0.61 11.22 6.78 -12.52 -0.08 11.13 16 12 O -0.54 -12.17 17.39 5.27 0.09 -12.07 16 13 N -0.61 -10.58 3.31 -169.83 -0.56 -11.14 16 14 C 0.11 1.64 6.48 -2.02 -0.01 1.63 16 15 C -0.10 -1.34 4.06 -87.34 -0.35 -1.69 16 16 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.11 -1.46 6.41 -24.93 -0.16 -1.62 16 18 C -0.13 -2.00 6.50 -25.73 -0.17 -2.17 16 19 C 0.18 3.20 3.54 -67.14 -0.24 2.96 16 20 H 0.06 1.15 7.91 -51.93 -0.41 0.74 16 21 N -0.71 -15.99 2.88 -52.66 -0.15 -16.14 16 22 C -0.25 -6.38 9.45 -15.06 -0.14 -6.52 16 23 H 0.07 1.82 7.74 -52.48 -0.41 1.41 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 25 N -0.93 -26.66 13.06 55.49 0.72 -25.93 16 26 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 C -0.12 -2.02 3.88 -88.56 -0.34 -2.36 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 C 0.10 2.01 6.25 -2.23 -0.01 1.99 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.94 7.96 -51.93 -0.41 0.53 16 36 H 0.09 1.48 7.56 -51.93 -0.39 1.08 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.14 7.25 -51.93 -0.38 0.77 16 44 H 0.06 0.83 7.43 -51.93 -0.39 0.44 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.94 7.20 -51.93 -0.37 0.56 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 49 H 0.39 9.30 7.62 -40.82 -0.31 8.98 16 50 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 51 H 0.07 1.41 7.88 -51.93 -0.41 1.01 16 52 H 0.13 3.00 5.23 -51.93 -0.27 2.73 16 LS Contribution 412.88 15.07 6.22 6.22 Total: -1.00 -31.86 412.88 -10.48 -42.34 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -10.02 Total: 11.05 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.44 Total: -3.05 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.69 Total: -61.44 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.86 -10.48 -42.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026399853.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.765 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds