Wall clock time and date at job start Wed Apr 1 2020 03:46:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.34264 * 126.29313 * 2 1
4 4 H 0.97003 * 125.74929 * 0.27130 * 3 2 1
5 5 N 1.39934 * 108.49057 * 180.26364 * 3 2 1
6 6 C 1.30444 * 108.89885 * 0.02562 * 5 3 2
7 7 C 1.50698 * 125.98714 * 179.97438 * 6 5 3
8 8 C 1.53004 * 109.47033 * 300.02512 * 7 6 5
9 9 C 1.52999 * 109.47501 * 60.02668 * 7 6 5
10 10 C 1.38042 * 126.29099 * 180.31606 * 2 1 3
11 11 C 1.47430 * 126.41347 * 359.73534 * 10 2 1
12 12 O 1.21607 * 120.00056 * 89.98052 * 11 10 2
13 13 N 1.34776 * 120.00236 * 269.97511 * 11 10 2
14 14 C 1.48353 * 128.19193 * 359.68171 * 13 11 10
15 15 C 1.54907 * 104.07156 * 138.26142 * 14 13 11
16 16 H 1.09000 * 112.55008 * 263.89851 * 15 14 13
17 17 C 1.55453 * 109.07499 * 138.46812 * 15 14 13
18 18 C 1.53956 * 106.11774 * 228.94414 * 17 15 14
19 19 C 1.53958 * 104.88875 * 29.97723 * 18 17 15
20 20 H 1.08998 * 110.19441 * 211.26706 * 19 18 17
21 21 N 1.46505 * 110.13974 * 89.57564 * 19 18 17
22 22 C 1.36936 * 119.99675 * 138.42037 * 21 19 18
23 23 H 1.08004 * 119.99927 * 0.02562 * 22 21 19
24 24 C 1.38803 * 120.00240 * 179.97438 * 22 21 19
25 25 N 1.31625 * 119.99911 * 359.97438 * 24 22 21
26 26 Si 1.86803 * 120.00290 * 180.02562 * 24 22 21
27 27 H 1.48499 * 109.47030 * 90.00106 * 26 24 22
28 28 H 1.48498 * 109.46973 * 209.99927 * 26 24 22
29 29 H 1.48502 * 109.47068 * 330.00012 * 26 24 22
30 30 C 1.53563 * 106.02904 * 330.43825 * 19 18 17
31 31 H 1.09001 * 111.65633 * 254.94401 * 30 19 18
32 32 C 1.48343 * 128.19627 * 180.02562 * 13 11 10
33 33 H 1.08997 * 109.47255 * 269.68442 * 1 2 3
34 34 H 1.09004 * 109.47234 * 29.68813 * 1 2 3
35 35 H 1.08994 * 109.47404 * 149.68215 * 1 2 3
36 36 H 1.08997 * 109.47121 * 180.02562 * 7 6 5
37 37 H 1.08997 * 109.46782 * 60.00265 * 8 7 6
38 38 H 1.09007 * 109.46929 * 179.97438 * 8 7 6
39 39 H 1.09000 * 109.47427 * 300.00265 * 8 7 6
40 40 H 1.08998 * 109.47232 * 180.02562 * 9 7 6
41 41 H 1.09008 * 109.46527 * 300.00045 * 9 7 6
42 42 H 1.09004 * 109.46790 * 59.99578 * 9 7 6
43 43 H 1.08994 * 110.46881 * 257.00190 * 14 13 11
44 44 H 1.08999 * 110.46893 * 19.59708 * 14 13 11
45 45 H 1.09001 * 109.75455 * 109.95836 * 17 15 14
46 46 H 1.09005 * 110.50135 * 348.33554 * 17 15 14
47 47 H 1.08998 * 110.35926 * 271.12002 * 18 17 15
48 48 H 1.09001 * 110.44303 * 148.87004 * 18 17 15
49 49 H 0.96993 * 120.00057 * 318.42309 * 21 19 18
50 50 H 0.96997 * 119.99820 * 179.97438 * 25 24 22
51 51 H 1.09003 * 110.47224 * 340.40180 * 32 13 11
52 52 H 1.08999 * 110.47275 * 103.00300 * 32 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3017 1.0822 0.0000
4 1 2.0026 2.0049 0.0037
5 7 3.6340 0.6543 -0.0061
6 6 3.6590 -0.6499 -0.0103
7 6 4.8950 -1.5119 -0.0180
8 6 5.7212 -1.2076 -1.2693
9 6 5.7307 -1.2165 1.2291
10 6 2.3240 -1.1126 -0.0061
11 6 1.8857 -2.5203 -0.0084
12 8 1.7007 -3.0978 -1.0625
13 7 1.6902 -3.1671 1.1577
14 6 1.8659 -2.6469 2.5359
15 6 0.6455 -3.2069 3.3082
16 1 -0.1766 -2.4934 3.3649
17 6 1.1095 -3.6876 4.7118
18 6 0.5302 -5.1026 4.8921
19 6 0.4549 -5.6835 3.4683
20 1 -0.3838 -6.3750 3.3880
21 7 1.7066 -6.3686 3.1362
22 6 1.6765 -7.5648 2.4704
23 1 0.7301 -8.0030 2.1897
24 6 2.8623 -8.2137 2.1552
25 7 4.0158 -7.6790 2.4958
26 14 2.8214 -9.8452 1.2462
27 1 2.8576 -9.5974 -0.2175
28 1 3.9985 -10.6606 1.6395
29 1 1.5754 -10.5745 1.5941
30 6 0.2436 -4.4849 2.5319
31 1 -0.7836 -4.4324 2.1712
32 6 1.2551 -4.5698 1.3668
33 1 -0.3633 -0.0057 1.0276
34 1 -0.3634 0.8928 -0.5090
35 1 -0.3634 -0.8871 -0.5187
36 1 4.6052 -2.5626 -0.0206
37 1 6.0110 -0.1569 -1.2667
38 1 6.6156 -1.8308 -1.2746
39 1 5.1259 -1.4180 -2.1578
40 1 6.6249 -1.8396 1.2233
41 1 6.0205 -0.1656 1.2317
42 1 5.1420 -1.4332 2.1206
43 1 2.7958 -3.0172 2.9674
44 1 1.8517 -1.5570 2.5366
45 1 0.7157 -3.0204 5.4786
46 1 2.1978 -3.7180 4.7644
47 1 -0.4649 -5.0515 5.3339
48 1 1.1899 -5.7077 5.5140
49 1 2.5565 -5.9749 3.3879
50 1 4.8445 -8.1326 2.2759
51 1 0.7717 -4.9568 0.4697
52 1 2.1039 -5.1951 1.6435
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001026399853.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:46:19
Heat of formation + Delta-G solvation = 25.712094 kcal
Electronic energy + Delta-G solvation = -32491.543250 eV
Core-core repulsion = 28491.530092 eV
Total energy + Delta-G solvation = -4000.013158 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-42.59012 -41.12681 -39.35607 -36.78964 -36.42180 -34.98804 -33.14465 -32.60449
-32.06331 -30.31141 -29.68928 -28.26267 -28.08996 -26.62091 -25.43003 -24.83652
-24.30286 -22.60344 -21.04514 -20.12191 -19.90892 -19.78558 -19.35391 -18.60504
-17.75987 -16.88285 -16.63472 -16.56726 -16.04522 -15.91831 -15.76232 -15.46905
-15.17768 -15.01440 -14.97714 -14.28755 -14.18944 -14.07266 -13.92915 -13.56046
-13.54860 -13.40258 -13.11971 -13.05651 -13.01315 -12.84126 -12.50824 -12.31559
-12.21485 -12.17584 -12.15032 -12.08069 -11.87750 -11.63178 -11.49492 -11.38386
-11.33426 -11.28189 -10.95405 -10.87744 -10.40866 -9.70237 -9.65434 -8.83863
-7.90513 -5.15745 0.65848 1.32582 1.46612 1.49648 1.54800 1.55148
1.72563 2.21839 2.58503 3.32105 3.42520 3.47569 3.61329 3.68281
3.86128 3.89455 4.02840 4.13265 4.15914 4.20704 4.34772 4.41504
4.43521 4.44754 4.54341 4.61443 4.64098 4.69339 4.74477 4.82741
4.83870 4.87551 4.88769 4.91257 4.94156 4.97406 5.06493 5.09786
5.14005 5.20672 5.23867 5.27768 5.31476 5.40879 5.47656 5.51570
5.55845 5.66426 5.69507 6.27120 6.32385 6.54946 6.68745 7.18436
7.39871 8.16004 8.37819 9.31970
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.010724 B = 0.003893 C = 0.003361
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2610.435778 B = 7190.027537 C = 8329.310820
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.096 4.096
2 C 0.147 3.853
3 N -0.445 5.445
4 H 0.459 0.541
5 N -0.299 5.299
6 C 0.119 3.881
7 C -0.025 4.025
8 C -0.134 4.134
9 C -0.131 4.131
10 C -0.305 4.305
11 C 0.611 3.389
12 O -0.598 6.598
13 N -0.608 5.608
14 C 0.116 3.884
15 C -0.084 4.084
16 H 0.114 0.886
17 C -0.105 4.105
18 C -0.125 4.125
19 C 0.168 3.832
20 H 0.056 0.944
21 N -0.717 5.717
22 C -0.232 4.232
23 H 0.073 0.927
24 C -0.066 4.066
25 N -0.962 5.962
26 Si 0.955 3.045
27 H -0.298 1.298
28 H -0.297 1.297
29 H -0.268 1.268
30 C -0.114 4.114
31 H 0.084 0.916
32 C 0.106 3.894
33 H 0.110 0.890
34 H 0.111 0.889
35 H 0.069 0.931
36 H 0.055 0.945
37 H 0.071 0.929
38 H 0.075 0.925
39 H 0.041 0.959
40 H 0.071 0.929
41 H 0.071 0.929
42 H 0.051 0.949
43 H 0.061 0.939
44 H 0.088 0.912
45 H 0.091 0.909
46 H 0.054 0.946
47 H 0.087 0.913
48 H 0.053 0.947
49 H 0.375 0.625
50 H 0.248 0.752
51 H 0.033 0.967
52 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.985 22.135 2.570 23.353
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.013 3.987
3 N -0.154 5.154
4 H 0.307 0.693
5 N -0.122 5.122
6 C -0.048 4.048
7 C -0.046 4.046
8 C -0.192 4.192
9 C -0.189 4.189
10 C -0.320 4.320
11 C 0.400 3.600
12 O -0.480 6.480
13 N -0.339 5.339
14 C -0.006 4.006
15 C -0.103 4.103
16 H 0.132 0.868
17 C -0.143 4.143
18 C -0.164 4.164
19 C 0.058 3.942
20 H 0.074 0.926
21 N -0.356 5.356
22 C -0.364 4.364
23 H 0.091 0.909
24 C -0.259 4.259
25 N -0.613 5.613
26 Si 0.786 3.214
27 H -0.227 1.227
28 H -0.224 1.224
29 H -0.193 1.193
30 C -0.136 4.136
31 H 0.102 0.898
32 C -0.016 4.016
33 H 0.129 0.871
34 H 0.129 0.871
35 H 0.087 0.913
36 H 0.074 0.926
37 H 0.090 0.910
38 H 0.094 0.906
39 H 0.060 0.940
40 H 0.090 0.910
41 H 0.090 0.910
42 H 0.070 0.930
43 H 0.079 0.921
44 H 0.107 0.893
45 H 0.110 0.890
46 H 0.072 0.928
47 H 0.105 0.895
48 H 0.072 0.928
49 H 0.208 0.792
50 H 0.057 0.943
51 H 0.052 0.948
52 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -6.419 22.776 1.861 23.736
hybrid contribution 0.103 -1.787 -0.963 2.032
sum -6.316 20.989 0.898 21.937
Atomic orbital electron populations
1.20702 0.83964 1.05173 1.05595 1.21659 0.95662 0.85758 0.95606
1.45938 1.03108 1.08866 1.57452 0.69268 1.76959 0.96959 1.11546
1.26687 1.22263 0.93963 0.91516 0.97035 1.19678 0.90586 0.95787
0.98510 1.21743 0.99437 1.02831 0.95171 1.21726 0.99342 1.02712
0.95115 1.19792 0.94076 0.92559 1.25584 1.17289 0.75717 0.85399
0.81630 1.90734 1.54832 1.69875 1.32514 1.49267 1.64822 1.13783
1.06007 1.22741 0.98461 0.99465 0.79940 1.22981 0.96810 0.96198
0.94327 0.86839 1.22386 1.00130 0.96073 0.95680 1.22484 1.01551
0.96138 0.96193 1.20998 0.88448 0.91829 0.92876 0.92564 1.42595
1.03789 1.22057 1.67137 1.19570 0.92372 0.97387 1.27121 0.90884
1.25312 0.95382 1.01870 1.03355 1.69772 0.96799 1.40910 1.53840
0.85405 0.76970 0.80995 0.78043 1.22651 1.22374 1.19332 1.23116
0.97879 0.97019 0.95561 0.89778 1.22861 1.00092 0.81678 0.96993
0.87121 0.87086 0.91253 0.92648 0.90998 0.90635 0.94005 0.91015
0.91046 0.93026 0.92060 0.89326 0.89047 0.92751 0.89488 0.92833
0.79203 0.94313 0.94838 0.89097
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.32 10.25 71.23 0.73 -0.58 16
2 C 0.15 3.12 7.29 42.14 0.31 3.43 16
3 N -0.45 -8.03 7.29 -46.80 -0.34 -8.37 16
4 H 0.46 4.27 8.96 -213.42 -1.91 2.36 16
5 N -0.30 -7.51 12.63 -46.68 -0.59 -8.10 16
6 C 0.12 3.49 5.77 43.51 0.25 3.74 16
7 C -0.02 -0.73 3.31 -11.54 -0.04 -0.76 16
8 C -0.13 -3.42 9.18 71.98 0.66 -2.76 16
9 C -0.13 -3.19 9.18 71.98 0.66 -2.53 16
10 C -0.31 -9.28 4.80 -20.15 -0.10 -9.38 16
11 C 0.61 23.31 6.78 86.66 0.59 23.90 16
12 O -0.60 -28.54 17.39 -4.05 -0.07 -28.61 16
13 N -0.61 -21.56 3.31 -809.48 -2.68 -24.23 16
14 C 0.12 3.19 6.48 86.67 0.56 3.75 16
15 C -0.08 -1.99 4.06 -8.67 -0.04 -2.03 16
16 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16
17 C -0.10 -2.40 6.41 31.76 0.20 -2.20 16
18 C -0.12 -3.44 6.50 31.24 0.20 -3.24 16
19 C 0.17 5.93 3.54 45.50 0.16 6.09 16
20 H 0.06 2.04 7.91 -2.39 -0.02 2.02 16
21 N -0.72 -33.25 2.88 -320.51 -0.92 -34.17 16
22 C -0.23 -12.38 9.45 84.03 0.79 -11.59 16
23 H 0.07 3.80 7.74 -2.91 -0.02 3.77 16
24 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16
25 N -0.96 -57.84 13.06 21.65 0.28 -57.56 16
26 Si 0.96 46.75 29.55 68.60 2.03 48.78 16
27 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16
28 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16
29 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16
30 C -0.11 -3.58 3.88 -9.46 -0.04 -3.61 16
31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16
32 C 0.11 4.33 6.25 86.54 0.54 4.87 16
33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16
34 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16
35 H 0.07 1.32 7.96 -2.39 -0.02 1.30 16
36 H 0.06 1.97 7.56 -2.39 -0.02 1.95 16
37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16
38 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16
39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16
40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16
41 H 0.07 1.55 8.14 -2.38 -0.02 1.54 16
42 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16
43 H 0.06 1.87 7.25 -2.39 -0.02 1.85 16
44 H 0.09 2.03 7.43 -2.39 -0.02 2.01 16
45 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16
46 H 0.05 1.42 7.20 -2.38 -0.02 1.40 16
47 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16
48 H 0.05 1.70 8.09 -2.39 -0.02 1.68 16
49 H 0.37 18.91 7.62 -92.71 -0.71 18.20 16
50 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16
51 H 0.03 1.53 7.88 -2.39 -0.02 1.51 16
52 H 0.09 4.50 5.23 -2.39 -0.01 4.49 16
Total: -1.00 -75.32 412.88 1.94 -73.38
By element:
Atomic # 1 Polarization: 36.76 SS G_CDS: -1.68 Total: 35.08 kcal
Atomic # 6 Polarization: -2.11 SS G_CDS: 5.92 Total: 3.81 kcal
Atomic # 7 Polarization: -128.19 SS G_CDS: -4.25 Total: -132.44 kcal
Atomic # 8 Polarization: -28.54 SS G_CDS: -0.07 Total: -28.61 kcal
Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal
Total: -75.32 1.94 -73.38 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001026399853.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.089 kcal
(2) G-P(sol) polarization free energy of solvation -75.321 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.768 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.377 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.712 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds