Wall clock time and date at job start Wed Apr 1 2020 03:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34264 * 126.29313 * 2 1 4 4 H 0.97003 * 125.74929 * 0.27130 * 3 2 1 5 5 N 1.39934 * 108.49057 * 180.26364 * 3 2 1 6 6 C 1.30444 * 108.89885 * 0.02562 * 5 3 2 7 7 C 1.50698 * 125.98714 * 179.97438 * 6 5 3 8 8 C 1.53004 * 109.47033 * 300.02512 * 7 6 5 9 9 C 1.52999 * 109.47501 * 60.02668 * 7 6 5 10 10 C 1.38042 * 126.29099 * 180.31606 * 2 1 3 11 11 C 1.47430 * 126.41347 * 359.73534 * 10 2 1 12 12 O 1.21607 * 120.00056 * 89.98052 * 11 10 2 13 13 N 1.34776 * 120.00236 * 269.97511 * 11 10 2 14 14 C 1.48353 * 128.19193 * 359.68171 * 13 11 10 15 15 C 1.54907 * 104.07156 * 138.26142 * 14 13 11 16 16 H 1.09000 * 112.55008 * 263.89851 * 15 14 13 17 17 C 1.55453 * 109.07499 * 138.46812 * 15 14 13 18 18 C 1.53956 * 106.11774 * 228.94414 * 17 15 14 19 19 C 1.53958 * 104.88875 * 29.97723 * 18 17 15 20 20 H 1.08998 * 110.19441 * 211.26706 * 19 18 17 21 21 N 1.46505 * 110.13974 * 89.57564 * 19 18 17 22 22 C 1.36936 * 119.99675 * 138.42037 * 21 19 18 23 23 H 1.08004 * 119.99927 * 0.02562 * 22 21 19 24 24 C 1.38803 * 120.00240 * 179.97438 * 22 21 19 25 25 N 1.31625 * 119.99911 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00290 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47030 * 90.00106 * 26 24 22 28 28 H 1.48498 * 109.46973 * 209.99927 * 26 24 22 29 29 H 1.48502 * 109.47068 * 330.00012 * 26 24 22 30 30 C 1.53563 * 106.02904 * 330.43825 * 19 18 17 31 31 H 1.09001 * 111.65633 * 254.94401 * 30 19 18 32 32 C 1.48343 * 128.19627 * 180.02562 * 13 11 10 33 33 H 1.08997 * 109.47255 * 269.68442 * 1 2 3 34 34 H 1.09004 * 109.47234 * 29.68813 * 1 2 3 35 35 H 1.08994 * 109.47404 * 149.68215 * 1 2 3 36 36 H 1.08997 * 109.47121 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.46782 * 60.00265 * 8 7 6 38 38 H 1.09007 * 109.46929 * 179.97438 * 8 7 6 39 39 H 1.09000 * 109.47427 * 300.00265 * 8 7 6 40 40 H 1.08998 * 109.47232 * 180.02562 * 9 7 6 41 41 H 1.09008 * 109.46527 * 300.00045 * 9 7 6 42 42 H 1.09004 * 109.46790 * 59.99578 * 9 7 6 43 43 H 1.08994 * 110.46881 * 257.00190 * 14 13 11 44 44 H 1.08999 * 110.46893 * 19.59708 * 14 13 11 45 45 H 1.09001 * 109.75455 * 109.95836 * 17 15 14 46 46 H 1.09005 * 110.50135 * 348.33554 * 17 15 14 47 47 H 1.08998 * 110.35926 * 271.12002 * 18 17 15 48 48 H 1.09001 * 110.44303 * 148.87004 * 18 17 15 49 49 H 0.96993 * 120.00057 * 318.42309 * 21 19 18 50 50 H 0.96997 * 119.99820 * 179.97438 * 25 24 22 51 51 H 1.09003 * 110.47224 * 340.40180 * 32 13 11 52 52 H 1.08999 * 110.47275 * 103.00300 * 32 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0026 2.0049 0.0037 5 7 3.6340 0.6543 -0.0061 6 6 3.6590 -0.6499 -0.0103 7 6 4.8950 -1.5119 -0.0180 8 6 5.7212 -1.2076 -1.2693 9 6 5.7307 -1.2165 1.2291 10 6 2.3240 -1.1126 -0.0061 11 6 1.8857 -2.5203 -0.0084 12 8 1.7007 -3.0978 -1.0625 13 7 1.6902 -3.1671 1.1577 14 6 1.8659 -2.6469 2.5359 15 6 0.6455 -3.2069 3.3082 16 1 -0.1766 -2.4934 3.3649 17 6 1.1095 -3.6876 4.7118 18 6 0.5302 -5.1026 4.8921 19 6 0.4549 -5.6835 3.4683 20 1 -0.3838 -6.3750 3.3880 21 7 1.7066 -6.3686 3.1362 22 6 1.6765 -7.5648 2.4704 23 1 0.7301 -8.0030 2.1897 24 6 2.8623 -8.2137 2.1552 25 7 4.0158 -7.6790 2.4958 26 14 2.8214 -9.8452 1.2462 27 1 2.8576 -9.5974 -0.2175 28 1 3.9985 -10.6606 1.6395 29 1 1.5754 -10.5745 1.5941 30 6 0.2436 -4.4849 2.5319 31 1 -0.7836 -4.4324 2.1712 32 6 1.2551 -4.5698 1.3668 33 1 -0.3633 -0.0057 1.0276 34 1 -0.3634 0.8928 -0.5090 35 1 -0.3634 -0.8871 -0.5187 36 1 4.6052 -2.5626 -0.0206 37 1 6.0110 -0.1569 -1.2667 38 1 6.6156 -1.8308 -1.2746 39 1 5.1259 -1.4180 -2.1578 40 1 6.6249 -1.8396 1.2233 41 1 6.0205 -0.1656 1.2317 42 1 5.1420 -1.4332 2.1206 43 1 2.7958 -3.0172 2.9674 44 1 1.8517 -1.5570 2.5366 45 1 0.7157 -3.0204 5.4786 46 1 2.1978 -3.7180 4.7644 47 1 -0.4649 -5.0515 5.3339 48 1 1.1899 -5.7077 5.5140 49 1 2.5565 -5.9749 3.3879 50 1 4.8445 -8.1326 2.2759 51 1 0.7717 -4.9568 0.4697 52 1 2.1039 -5.1951 1.6435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026399853.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:19 Heat of formation + Delta-G solvation = 25.712094 kcal Electronic energy + Delta-G solvation = -32491.543250 eV Core-core repulsion = 28491.530092 eV Total energy + Delta-G solvation = -4000.013158 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.59012 -41.12681 -39.35607 -36.78964 -36.42180 -34.98804 -33.14465 -32.60449 -32.06331 -30.31141 -29.68928 -28.26267 -28.08996 -26.62091 -25.43003 -24.83652 -24.30286 -22.60344 -21.04514 -20.12191 -19.90892 -19.78558 -19.35391 -18.60504 -17.75987 -16.88285 -16.63472 -16.56726 -16.04522 -15.91831 -15.76232 -15.46905 -15.17768 -15.01440 -14.97714 -14.28755 -14.18944 -14.07266 -13.92915 -13.56046 -13.54860 -13.40258 -13.11971 -13.05651 -13.01315 -12.84126 -12.50824 -12.31559 -12.21485 -12.17584 -12.15032 -12.08069 -11.87750 -11.63178 -11.49492 -11.38386 -11.33426 -11.28189 -10.95405 -10.87744 -10.40866 -9.70237 -9.65434 -8.83863 -7.90513 -5.15745 0.65848 1.32582 1.46612 1.49648 1.54800 1.55148 1.72563 2.21839 2.58503 3.32105 3.42520 3.47569 3.61329 3.68281 3.86128 3.89455 4.02840 4.13265 4.15914 4.20704 4.34772 4.41504 4.43521 4.44754 4.54341 4.61443 4.64098 4.69339 4.74477 4.82741 4.83870 4.87551 4.88769 4.91257 4.94156 4.97406 5.06493 5.09786 5.14005 5.20672 5.23867 5.27768 5.31476 5.40879 5.47656 5.51570 5.55845 5.66426 5.69507 6.27120 6.32385 6.54946 6.68745 7.18436 7.39871 8.16004 8.37819 9.31970 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010724 B = 0.003893 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.435778 B = 7190.027537 C = 8329.310820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.147 3.853 3 N -0.445 5.445 4 H 0.459 0.541 5 N -0.299 5.299 6 C 0.119 3.881 7 C -0.025 4.025 8 C -0.134 4.134 9 C -0.131 4.131 10 C -0.305 4.305 11 C 0.611 3.389 12 O -0.598 6.598 13 N -0.608 5.608 14 C 0.116 3.884 15 C -0.084 4.084 16 H 0.114 0.886 17 C -0.105 4.105 18 C -0.125 4.125 19 C 0.168 3.832 20 H 0.056 0.944 21 N -0.717 5.717 22 C -0.232 4.232 23 H 0.073 0.927 24 C -0.066 4.066 25 N -0.962 5.962 26 Si 0.955 3.045 27 H -0.298 1.298 28 H -0.297 1.297 29 H -0.268 1.268 30 C -0.114 4.114 31 H 0.084 0.916 32 C 0.106 3.894 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.054 0.946 47 H 0.087 0.913 48 H 0.053 0.947 49 H 0.375 0.625 50 H 0.248 0.752 51 H 0.033 0.967 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 22.135 2.570 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.013 3.987 3 N -0.154 5.154 4 H 0.307 0.693 5 N -0.122 5.122 6 C -0.048 4.048 7 C -0.046 4.046 8 C -0.192 4.192 9 C -0.189 4.189 10 C -0.320 4.320 11 C 0.400 3.600 12 O -0.480 6.480 13 N -0.339 5.339 14 C -0.006 4.006 15 C -0.103 4.103 16 H 0.132 0.868 17 C -0.143 4.143 18 C -0.164 4.164 19 C 0.058 3.942 20 H 0.074 0.926 21 N -0.356 5.356 22 C -0.364 4.364 23 H 0.091 0.909 24 C -0.259 4.259 25 N -0.613 5.613 26 Si 0.786 3.214 27 H -0.227 1.227 28 H -0.224 1.224 29 H -0.193 1.193 30 C -0.136 4.136 31 H 0.102 0.898 32 C -0.016 4.016 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.072 0.928 47 H 0.105 0.895 48 H 0.072 0.928 49 H 0.208 0.792 50 H 0.057 0.943 51 H 0.052 0.948 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.419 22.776 1.861 23.736 hybrid contribution 0.103 -1.787 -0.963 2.032 sum -6.316 20.989 0.898 21.937 Atomic orbital electron populations 1.20702 0.83964 1.05173 1.05595 1.21659 0.95662 0.85758 0.95606 1.45938 1.03108 1.08866 1.57452 0.69268 1.76959 0.96959 1.11546 1.26687 1.22263 0.93963 0.91516 0.97035 1.19678 0.90586 0.95787 0.98510 1.21743 0.99437 1.02831 0.95171 1.21726 0.99342 1.02712 0.95115 1.19792 0.94076 0.92559 1.25584 1.17289 0.75717 0.85399 0.81630 1.90734 1.54832 1.69875 1.32514 1.49267 1.64822 1.13783 1.06007 1.22741 0.98461 0.99465 0.79940 1.22981 0.96810 0.96198 0.94327 0.86839 1.22386 1.00130 0.96073 0.95680 1.22484 1.01551 0.96138 0.96193 1.20998 0.88448 0.91829 0.92876 0.92564 1.42595 1.03789 1.22057 1.67137 1.19570 0.92372 0.97387 1.27121 0.90884 1.25312 0.95382 1.01870 1.03355 1.69772 0.96799 1.40910 1.53840 0.85405 0.76970 0.80995 0.78043 1.22651 1.22374 1.19332 1.23116 0.97879 0.97019 0.95561 0.89778 1.22861 1.00092 0.81678 0.96993 0.87121 0.87086 0.91253 0.92648 0.90998 0.90635 0.94005 0.91015 0.91046 0.93026 0.92060 0.89326 0.89047 0.92751 0.89488 0.92833 0.79203 0.94313 0.94838 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.25 71.23 0.73 -0.58 16 2 C 0.15 3.12 7.29 42.14 0.31 3.43 16 3 N -0.45 -8.03 7.29 -46.80 -0.34 -8.37 16 4 H 0.46 4.27 8.96 -213.42 -1.91 2.36 16 5 N -0.30 -7.51 12.63 -46.68 -0.59 -8.10 16 6 C 0.12 3.49 5.77 43.51 0.25 3.74 16 7 C -0.02 -0.73 3.31 -11.54 -0.04 -0.76 16 8 C -0.13 -3.42 9.18 71.98 0.66 -2.76 16 9 C -0.13 -3.19 9.18 71.98 0.66 -2.53 16 10 C -0.31 -9.28 4.80 -20.15 -0.10 -9.38 16 11 C 0.61 23.31 6.78 86.66 0.59 23.90 16 12 O -0.60 -28.54 17.39 -4.05 -0.07 -28.61 16 13 N -0.61 -21.56 3.31 -809.48 -2.68 -24.23 16 14 C 0.12 3.19 6.48 86.67 0.56 3.75 16 15 C -0.08 -1.99 4.06 -8.67 -0.04 -2.03 16 16 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 17 C -0.10 -2.40 6.41 31.76 0.20 -2.20 16 18 C -0.12 -3.44 6.50 31.24 0.20 -3.24 16 19 C 0.17 5.93 3.54 45.50 0.16 6.09 16 20 H 0.06 2.04 7.91 -2.39 -0.02 2.02 16 21 N -0.72 -33.25 2.88 -320.51 -0.92 -34.17 16 22 C -0.23 -12.38 9.45 84.03 0.79 -11.59 16 23 H 0.07 3.80 7.74 -2.91 -0.02 3.77 16 24 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 25 N -0.96 -57.84 13.06 21.65 0.28 -57.56 16 26 Si 0.96 46.75 29.55 68.60 2.03 48.78 16 27 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 28 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 29 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 30 C -0.11 -3.58 3.88 -9.46 -0.04 -3.61 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 C 0.11 4.33 6.25 86.54 0.54 4.87 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 1.32 7.96 -2.39 -0.02 1.30 16 36 H 0.06 1.97 7.56 -2.39 -0.02 1.95 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.55 8.14 -2.38 -0.02 1.54 16 42 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.06 1.87 7.25 -2.39 -0.02 1.85 16 44 H 0.09 2.03 7.43 -2.39 -0.02 2.01 16 45 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.05 1.42 7.20 -2.38 -0.02 1.40 16 47 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.05 1.70 8.09 -2.39 -0.02 1.68 16 49 H 0.37 18.91 7.62 -92.71 -0.71 18.20 16 50 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 51 H 0.03 1.53 7.88 -2.39 -0.02 1.51 16 52 H 0.09 4.50 5.23 -2.39 -0.01 4.49 16 Total: -1.00 -75.32 412.88 1.94 -73.38 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: -1.68 Total: 35.08 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 5.92 Total: 3.81 kcal Atomic # 7 Polarization: -128.19 SS G_CDS: -4.25 Total: -132.44 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.07 Total: -28.61 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -75.32 1.94 -73.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026399853.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.089 kcal (2) G-P(sol) polarization free energy of solvation -75.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds