Wall clock time and date at job start Wed Apr 1 2020 03:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30848 * 125.90033 * 2 1 4 4 N 1.40086 * 108.20511 * 179.97438 * 3 2 1 5 5 H 0.97004 * 126.02895 * 179.97438 * 4 3 2 6 6 C 1.34944 * 107.92603 * 359.75896 * 4 3 2 7 7 C 1.50703 * 126.12396 * 180.23422 * 6 4 3 8 8 C 1.35311 * 107.74557 * 0.39028 * 6 4 3 9 9 C 1.50703 * 126.03633 * 179.87250 * 8 6 4 10 10 C 1.53001 * 109.47454 * 269.71259 * 9 8 6 11 11 C 1.50693 * 109.47528 * 180.02562 * 10 9 8 12 12 O 1.21284 * 119.99893 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00210 * 180.02562 * 11 10 9 14 14 C 1.49624 * 126.07138 * 0.02562 * 13 11 10 15 15 C 1.51517 * 102.49325 * 154.37560 * 14 13 11 16 16 H 1.09003 * 111.54555 * 287.98602 * 15 14 13 17 17 C 1.51759 * 123.33180 * 151.64667 * 15 14 13 18 18 C 1.56337 * 101.72344 * 207.96565 * 17 15 14 19 19 C 1.56006 * 105.83219 * 25.45591 * 18 17 15 20 20 H 1.09005 * 110.52157 * 248.29461 * 19 18 17 21 21 N 1.46500 * 110.52391 * 125.54505 * 19 18 17 22 22 C 1.36943 * 119.99605 * 86.45642 * 21 19 18 23 23 H 1.08000 * 120.00112 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99502 * 180.02562 * 22 21 19 25 25 N 1.31622 * 120.00206 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99701 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47570 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47123 * 120.00016 * 26 24 22 29 29 H 1.48508 * 109.47025 * 239.99673 * 26 24 22 30 30 C 1.49704 * 103.98878 * 6.91628 * 19 18 17 31 31 H 1.09005 * 108.54480 * 77.98516 * 30 19 18 32 32 C 1.49290 * 126.07320 * 180.02562 * 13 11 10 33 33 H 1.09008 * 109.46809 * 270.02334 * 1 2 3 34 34 H 1.09004 * 109.46992 * 30.02213 * 1 2 3 35 35 H 1.08999 * 109.46787 * 150.02392 * 1 2 3 36 36 H 1.08996 * 109.47437 * 270.17660 * 7 6 4 37 37 H 1.08998 * 109.47047 * 30.18349 * 7 6 4 38 38 H 1.09001 * 109.46496 * 150.17797 * 7 6 4 39 39 H 1.09008 * 109.46949 * 149.71669 * 9 8 6 40 40 H 1.09000 * 109.47513 * 29.71661 * 9 8 6 41 41 H 1.08999 * 109.46686 * 59.99978 * 10 9 8 42 42 H 1.09006 * 109.46781 * 300.00420 * 10 9 8 43 43 H 1.09001 * 110.79904 * 36.12205 * 14 13 11 44 44 H 1.08995 * 110.79968 * 272.62704 * 14 13 11 45 45 H 1.09001 * 111.02482 * 89.85356 * 17 15 14 46 46 H 1.09002 * 110.98473 * 326.05719 * 17 15 14 47 47 H 1.09002 * 110.19090 * 266.34156 * 18 17 15 48 48 H 1.08994 * 110.19065 * 144.56916 * 18 17 15 49 49 H 0.96996 * 120.00207 * 266.44996 * 21 19 18 50 50 H 0.97001 * 119.99953 * 180.02562 * 25 24 22 51 51 H 1.08997 * 110.39395 * 54.78817 * 32 13 11 52 52 H 1.09001 * 110.39220 * 292.39177 * 32 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 0.0006 5 1 4.3908 1.2081 0.0004 6 6 3.6142 -0.7153 0.0064 7 6 4.8351 -1.5988 0.0140 8 6 2.3272 -1.1329 0.0005 9 6 1.8600 -2.5657 0.0011 10 6 1.7025 -3.0515 -1.4411 11 6 1.2348 -4.4840 -1.4405 12 8 1.0464 -5.0599 -0.3899 13 7 1.0268 -5.1255 -2.6075 14 6 1.2170 -4.5498 -3.9754 15 6 1.4886 -5.7818 -4.8146 16 1 2.4766 -6.1948 -4.6113 17 6 1.1491 -5.8767 -6.2907 18 6 0.9172 -7.4129 -6.4652 19 6 0.4969 -7.9423 -5.0592 20 1 1.2750 -8.5827 -4.6437 21 7 -0.7751 -8.6645 -5.1415 22 6 -0.7866 -9.9971 -5.4566 23 1 0.1419 -10.5156 -5.6448 24 6 -1.9919 -10.6813 -5.5351 25 7 -3.1235 -10.0492 -5.3062 26 14 -2.0077 -12.4989 -5.9655 27 1 -0.6153 -12.9702 -6.1751 28 1 -2.6284 -13.2652 -4.8552 29 1 -2.7924 -12.7062 -7.2092 30 6 0.3436 -6.7012 -4.2362 31 1 -0.6103 -6.2360 -4.4848 32 6 0.5656 -6.5367 -2.7648 33 1 -0.3633 0.0004 1.0278 34 1 -0.3633 0.8898 -0.5142 35 1 -0.3633 -0.8902 -0.5135 36 1 5.1346 -1.8136 -1.0118 37 1 5.6486 -1.0900 0.5311 38 1 4.6050 -2.5319 0.5283 39 1 0.9009 -2.6349 0.5146 40 1 2.5932 -3.1868 0.5157 41 1 2.6616 -2.9822 -1.9545 42 1 0.9693 -2.4304 -1.9557 43 1 2.0706 -3.8722 -3.9948 44 1 0.3120 -4.0440 -4.3117 45 1 1.9816 -5.5356 -6.9061 46 1 0.2422 -5.3170 -6.5194 47 1 1.8378 -7.8978 -6.7900 48 1 0.1221 -7.5936 -7.1884 49 1 -1.6090 -8.1988 -4.9727 50 1 -3.9657 -10.5274 -5.3607 51 1 -0.3651 -6.6950 -2.2202 52 1 1.3330 -7.2280 -2.4164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026418523.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:24 Heat of formation + Delta-G solvation = 48.821814 kcal Electronic energy + Delta-G solvation = -30276.010561 eV Core-core repulsion = 26276.999516 eV Total energy + Delta-G solvation = -3999.011045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.68069 -40.49649 -38.69166 -35.31636 -34.39023 -33.66820 -33.37059 -31.00598 -30.86662 -29.52559 -28.44022 -28.14464 -27.30322 -25.51959 -24.30622 -23.15497 -22.50687 -20.45523 -20.21030 -19.54109 -19.14575 -18.98731 -17.63946 -17.13371 -16.61208 -16.41285 -15.69406 -15.47890 -14.85820 -14.72601 -14.44480 -14.04009 -13.94149 -13.76411 -13.66038 -13.59941 -13.31547 -12.88459 -12.81057 -12.72122 -12.65615 -12.56099 -12.40234 -12.25247 -11.96313 -11.83267 -11.55919 -11.38413 -11.23710 -11.02061 -10.81072 -10.78772 -10.68260 -10.46546 -10.15305 -10.11173 -9.81215 -9.71746 -9.57137 -9.52702 -8.92117 -8.63615 -8.57660 -6.97776 -5.78131 -3.07240 1.53742 2.38085 2.53856 2.72982 2.97212 3.42752 3.48626 3.50737 4.13392 4.29158 4.35474 4.56123 4.58462 4.66516 4.84239 4.90600 4.96894 5.03676 5.07740 5.09783 5.27381 5.30217 5.31357 5.37552 5.39606 5.42642 5.43806 5.48788 5.55585 5.62654 5.69678 5.74765 5.78357 5.87936 5.91748 5.97596 6.02964 6.03705 6.08031 6.14513 6.23028 6.33696 6.38878 6.42372 6.51122 6.63210 6.78281 6.97613 7.05493 7.40516 7.59362 7.70429 8.24318 8.40148 9.51588 10.08196 10.42622 11.44351 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021098 B = 0.001940 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.790974 B =14426.689795 C =14752.935008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.086 3.914 3 N -0.298 5.298 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.090 3.910 7 C -0.096 4.096 8 C -0.232 4.232 9 C -0.024 4.024 10 C -0.128 4.128 11 C 0.525 3.475 12 O -0.544 6.544 13 N -0.626 5.626 14 C 0.118 3.882 15 C -0.127 4.127 16 H 0.086 0.914 17 C -0.100 4.100 18 C -0.143 4.143 19 C 0.199 3.801 20 H 0.053 0.947 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 C -0.119 4.119 31 H 0.075 0.925 32 C 0.133 3.867 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.074 0.926 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.075 0.925 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.435 21.974 6.922 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 N -0.122 5.122 4 N -0.187 5.187 5 H 0.280 0.720 6 C -0.038 4.038 7 C -0.154 4.154 8 C -0.243 4.243 9 C -0.063 4.063 10 C -0.168 4.168 11 C 0.314 3.686 12 O -0.422 6.422 13 N -0.361 5.361 14 C -0.004 4.004 15 C -0.147 4.147 16 H 0.104 0.896 17 C -0.138 4.138 18 C -0.184 4.184 19 C 0.088 3.912 20 H 0.071 0.929 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.139 4.139 31 H 0.093 0.907 32 C 0.012 3.988 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.093 0.907 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.377 22.781 7.548 28.502 hybrid contribution 0.095 -1.308 -0.365 1.361 sum 15.472 21.473 7.184 27.424 Atomic orbital electron populations 1.20232 0.86628 1.03496 1.03243 1.22279 0.97006 0.90175 0.98603 1.77294 0.86478 1.22366 1.26027 1.46146 1.07300 1.04831 1.60421 0.71991 1.20914 0.97027 0.84888 1.00972 1.20510 0.92726 0.98609 1.03587 1.19731 0.91108 0.96307 1.17151 1.19593 1.02574 0.89370 0.94732 1.21636 1.02927 0.92624 0.99603 1.20390 0.77451 0.88481 0.82265 1.90712 1.52376 1.68610 1.30514 1.49936 1.66784 1.13890 1.05500 1.21758 1.01081 0.95761 0.81773 1.22601 0.99915 0.95852 0.96290 0.89559 1.21894 1.00650 0.98145 0.93128 1.23793 1.01125 0.92706 1.00820 1.19939 0.90418 0.89757 0.91120 0.92885 1.42506 1.02207 1.07871 1.83493 1.19281 0.92696 0.85777 1.39271 0.91084 1.24751 0.95413 0.98136 1.02641 1.69669 0.96871 1.35365 1.56088 0.86138 0.77256 0.85324 0.77585 1.20555 1.21879 1.21929 1.22059 0.99139 0.99236 0.93495 0.90684 1.20982 1.00109 0.81404 0.96335 0.90327 0.90837 0.90153 0.89991 0.91113 0.89209 0.90316 0.90652 0.89364 0.89124 0.90737 0.90888 0.92224 0.91539 0.92738 0.90729 0.78165 0.93548 0.90712 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.12 36.00 0.36 -0.24 16 2 C 0.09 0.87 7.22 -82.40 -0.59 0.27 16 3 N -0.30 -3.22 12.70 33.67 0.43 -2.79 16 4 N -0.48 -3.87 7.36 33.48 0.25 -3.63 16 5 H 0.44 2.16 8.96 -182.60 -1.64 0.52 16 6 C 0.09 0.72 7.21 -82.27 -0.59 0.12 16 7 C -0.10 -0.47 10.22 36.01 0.37 -0.10 16 8 C -0.23 -2.17 5.35 -105.05 -0.56 -2.73 16 9 C -0.02 -0.23 4.45 -27.88 -0.12 -0.35 16 10 C -0.13 -1.19 4.74 -27.89 -0.13 -1.33 16 11 C 0.53 7.01 7.88 -10.99 -0.09 6.92 16 12 O -0.54 -9.36 16.35 5.55 0.09 -9.27 16 13 N -0.63 -8.20 3.43 -171.57 -0.59 -8.78 16 14 C 0.12 1.23 6.48 -3.05 -0.02 1.21 16 15 C -0.13 -1.51 3.14 -89.36 -0.28 -1.79 16 16 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 17 C -0.10 -1.22 6.63 -25.57 -0.17 -1.39 16 18 C -0.14 -2.30 6.73 -23.33 -0.16 -2.46 16 19 C 0.20 3.69 3.43 -67.95 -0.23 3.46 16 20 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 21 N -0.72 -17.30 5.12 -53.44 -0.27 -17.57 16 22 C -0.24 -6.45 9.98 -15.06 -0.15 -6.60 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 26 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 C -0.12 -1.85 2.18 -91.24 -0.20 -2.05 16 31 H 0.07 1.24 7.75 -51.93 -0.40 0.84 16 32 C 0.13 2.06 6.82 -4.12 -0.03 2.03 16 33 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.57 7.92 -51.93 -0.41 0.16 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.09 0.46 7.14 -51.93 -0.37 0.09 16 39 H 0.08 0.83 7.88 -51.92 -0.41 0.42 16 40 H 0.07 0.74 7.10 -51.93 -0.37 0.37 16 41 H 0.09 0.69 7.91 -51.93 -0.41 0.28 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.60 7.58 -51.93 -0.39 0.20 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 1.38 7.98 -51.93 -0.41 0.96 16 49 H 0.38 9.90 7.63 -40.82 -0.31 9.59 16 50 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 52 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 416.75 15.07 6.28 6.28 Total: -1.00 -33.82 416.75 -10.98 -44.79 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -10.17 Total: 6.38 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -2.69 Total: -5.50 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.54 Total: -59.82 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.82 -10.98 -44.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026418523.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.616 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds