Wall clock time and date at job start Wed Apr 1 2020 03:46:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.30848 * 125.90033 * 2 1
4 4 N 1.40086 * 108.20511 * 179.97438 * 3 2 1
5 5 H 0.97004 * 126.02895 * 179.97438 * 4 3 2
6 6 C 1.34944 * 107.92603 * 359.75896 * 4 3 2
7 7 C 1.50703 * 126.12396 * 180.23422 * 6 4 3
8 8 C 1.35311 * 107.74557 * 0.39028 * 6 4 3
9 9 C 1.50703 * 126.03633 * 179.87250 * 8 6 4
10 10 C 1.53001 * 109.47454 * 269.71259 * 9 8 6
11 11 C 1.50693 * 109.47528 * 180.02562 * 10 9 8
12 12 O 1.21284 * 119.99893 * 359.97438 * 11 10 9
13 13 N 1.34779 * 120.00210 * 180.02562 * 11 10 9
14 14 C 1.49624 * 126.07138 * 0.02562 * 13 11 10
15 15 C 1.51517 * 102.49325 * 154.37560 * 14 13 11
16 16 H 1.09003 * 111.54555 * 287.98602 * 15 14 13
17 17 C 1.51759 * 123.33180 * 151.64667 * 15 14 13
18 18 C 1.56337 * 101.72344 * 207.96565 * 17 15 14
19 19 C 1.56006 * 105.83219 * 25.45591 * 18 17 15
20 20 H 1.09005 * 110.52157 * 248.29461 * 19 18 17
21 21 N 1.46500 * 110.52391 * 125.54505 * 19 18 17
22 22 C 1.36943 * 119.99605 * 86.45642 * 21 19 18
23 23 H 1.08000 * 120.00112 * 359.97438 * 22 21 19
24 24 C 1.38813 * 119.99502 * 180.02562 * 22 21 19
25 25 N 1.31622 * 120.00206 * 359.97438 * 24 22 21
26 26 Si 1.86799 * 119.99701 * 179.97438 * 24 22 21
27 27 H 1.48493 * 109.47570 * 359.97438 * 26 24 22
28 28 H 1.48503 * 109.47123 * 120.00016 * 26 24 22
29 29 H 1.48508 * 109.47025 * 239.99673 * 26 24 22
30 30 C 1.49704 * 103.98878 * 6.91628 * 19 18 17
31 31 H 1.09005 * 108.54480 * 77.98516 * 30 19 18
32 32 C 1.49290 * 126.07320 * 180.02562 * 13 11 10
33 33 H 1.09008 * 109.46809 * 270.02334 * 1 2 3
34 34 H 1.09004 * 109.46992 * 30.02213 * 1 2 3
35 35 H 1.08999 * 109.46787 * 150.02392 * 1 2 3
36 36 H 1.08996 * 109.47437 * 270.17660 * 7 6 4
37 37 H 1.08998 * 109.47047 * 30.18349 * 7 6 4
38 38 H 1.09001 * 109.46496 * 150.17797 * 7 6 4
39 39 H 1.09008 * 109.46949 * 149.71669 * 9 8 6
40 40 H 1.09000 * 109.47513 * 29.71661 * 9 8 6
41 41 H 1.08999 * 109.46686 * 59.99978 * 10 9 8
42 42 H 1.09006 * 109.46781 * 300.00420 * 10 9 8
43 43 H 1.09001 * 110.79904 * 36.12205 * 14 13 11
44 44 H 1.08995 * 110.79968 * 272.62704 * 14 13 11
45 45 H 1.09001 * 111.02482 * 89.85356 * 17 15 14
46 46 H 1.09002 * 110.98473 * 326.05719 * 17 15 14
47 47 H 1.09002 * 110.19090 * 266.34156 * 18 17 15
48 48 H 1.08994 * 110.19065 * 144.56916 * 18 17 15
49 49 H 0.96996 * 120.00207 * 266.44996 * 21 19 18
50 50 H 0.97001 * 119.99953 * 180.02562 * 25 24 22
51 51 H 1.08997 * 110.39395 * 54.78817 * 32 13 11
52 52 H 1.09001 * 110.39220 * 292.39177 * 32 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2742 1.0599 0.0000
4 7 3.6088 0.6341 0.0006
5 1 4.3908 1.2081 0.0004
6 6 3.6142 -0.7153 0.0064
7 6 4.8351 -1.5988 0.0140
8 6 2.3272 -1.1329 0.0005
9 6 1.8600 -2.5657 0.0011
10 6 1.7025 -3.0515 -1.4411
11 6 1.2348 -4.4840 -1.4405
12 8 1.0464 -5.0599 -0.3899
13 7 1.0268 -5.1255 -2.6075
14 6 1.2170 -4.5498 -3.9754
15 6 1.4886 -5.7818 -4.8146
16 1 2.4766 -6.1948 -4.6113
17 6 1.1491 -5.8767 -6.2907
18 6 0.9172 -7.4129 -6.4652
19 6 0.4969 -7.9423 -5.0592
20 1 1.2750 -8.5827 -4.6437
21 7 -0.7751 -8.6645 -5.1415
22 6 -0.7866 -9.9971 -5.4566
23 1 0.1419 -10.5156 -5.6448
24 6 -1.9919 -10.6813 -5.5351
25 7 -3.1235 -10.0492 -5.3062
26 14 -2.0077 -12.4989 -5.9655
27 1 -0.6153 -12.9702 -6.1751
28 1 -2.6284 -13.2652 -4.8552
29 1 -2.7924 -12.7062 -7.2092
30 6 0.3436 -6.7012 -4.2362
31 1 -0.6103 -6.2360 -4.4848
32 6 0.5656 -6.5367 -2.7648
33 1 -0.3633 0.0004 1.0278
34 1 -0.3633 0.8898 -0.5142
35 1 -0.3633 -0.8902 -0.5135
36 1 5.1346 -1.8136 -1.0118
37 1 5.6486 -1.0900 0.5311
38 1 4.6050 -2.5319 0.5283
39 1 0.9009 -2.6349 0.5146
40 1 2.5932 -3.1868 0.5157
41 1 2.6616 -2.9822 -1.9545
42 1 0.9693 -2.4304 -1.9557
43 1 2.0706 -3.8722 -3.9948
44 1 0.3120 -4.0440 -4.3117
45 1 1.9816 -5.5356 -6.9061
46 1 0.2422 -5.3170 -6.5194
47 1 1.8378 -7.8978 -6.7900
48 1 0.1221 -7.5936 -7.1884
49 1 -1.6090 -8.1988 -4.9727
50 1 -3.9657 -10.5274 -5.3607
51 1 -0.3651 -6.6950 -2.2202
52 1 1.3330 -7.2280 -2.4164
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001026418523.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:46:23
Heat of formation + Delta-G solvation = 27.245230 kcal
Electronic energy + Delta-G solvation = -30276.946192 eV
Core-core repulsion = 26276.999516 eV
Total energy + Delta-G solvation = -3999.946676 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.32584 -41.62893 -39.84064 -36.76007 -35.15453 -35.03259 -34.25441 -32.64759
-31.76902 -30.54452 -29.73057 -28.80876 -27.92973 -26.99355 -25.22346 -24.87529
-23.61818 -21.38103 -21.07026 -20.47554 -20.21584 -20.00172 -19.08375 -18.28396
-17.64044 -17.57359 -16.72423 -16.53893 -16.15949 -15.65692 -15.61477 -15.46574
-15.32377 -14.78699 -14.39935 -14.34328 -14.12358 -14.08007 -13.87769 -13.55376
-13.41711 -13.31599 -13.18878 -13.12577 -13.08045 -12.98844 -12.84803 -12.63257
-12.59251 -12.40575 -12.12237 -12.07434 -11.96017 -11.81449 -11.55237 -11.36566
-11.34281 -10.97867 -10.94844 -10.76617 -10.17538 -9.68405 -9.29489 -8.97507
-7.92971 -5.20754 0.91866 1.47341 1.48087 1.57749 1.66251 1.70317
1.94567 2.02901 2.57087 3.02464 3.41540 3.56884 3.68948 3.77225
3.82132 4.01074 4.05355 4.15246 4.21253 4.28464 4.33261 4.34900
4.46385 4.52933 4.56553 4.60116 4.62469 4.67232 4.74969 4.75722
4.77181 4.79955 4.81848 4.83851 4.97611 5.02990 5.04949 5.09747
5.14869 5.18548 5.22931 5.26332 5.30439 5.39628 5.40888 5.50255
5.55964 5.66362 5.76724 6.29732 6.47511 6.57884 6.76634 7.20189
7.35358 8.12433 8.34314 9.30693
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.021098 B = 0.001940 C = 0.001897
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1326.790974 B =14426.689795 C =14752.935008
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.074 3.926
3 N -0.333 5.333
4 N -0.473 5.473
5 H 0.449 0.551
6 C 0.101 3.899
7 C -0.096 4.096
8 C -0.251 4.251
9 C -0.016 4.016
10 C -0.114 4.114
11 C 0.522 3.478
12 O -0.591 6.591
13 N -0.624 5.624
14 C 0.121 3.879
15 C -0.104 4.104
16 H 0.095 0.905
17 C -0.086 4.086
18 C -0.138 4.138
19 C 0.188 3.812
20 H 0.044 0.956
21 N -0.734 5.734
22 C -0.233 4.233
23 H 0.076 0.924
24 C -0.079 4.079
25 N -0.970 5.970
26 Si 0.969 3.031
27 H -0.265 1.265
28 H -0.297 1.297
29 H -0.294 1.294
30 C -0.123 4.123
31 H 0.062 0.938
32 C 0.135 3.865
33 H 0.081 0.919
34 H 0.077 0.923
35 H 0.085 0.915
36 H 0.098 0.902
37 H 0.089 0.911
38 H 0.087 0.913
39 H 0.061 0.939
40 H 0.070 0.930
41 H 0.116 0.884
42 H 0.106 0.894
43 H 0.115 0.885
44 H 0.083 0.917
45 H 0.093 0.907
46 H 0.069 0.931
47 H 0.066 0.934
48 H 0.045 0.955
49 H 0.371 0.629
50 H 0.249 0.751
51 H 0.044 0.956
52 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.465 23.746 5.812 30.636
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.092 4.092
3 N -0.157 5.157
4 N -0.183 5.183
5 H 0.295 0.705
6 C -0.029 4.029
7 C -0.154 4.154
8 C -0.262 4.262
9 C -0.055 4.055
10 C -0.153 4.153
11 C 0.313 3.687
12 O -0.472 6.472
13 N -0.359 5.359
14 C 0.000 4.000
15 C -0.123 4.123
16 H 0.114 0.886
17 C -0.124 4.124
18 C -0.178 4.178
19 C 0.079 3.921
20 H 0.062 0.938
21 N -0.374 5.374
22 C -0.365 4.365
23 H 0.094 0.906
24 C -0.271 4.271
25 N -0.622 5.622
26 Si 0.799 3.201
27 H -0.189 1.189
28 H -0.225 1.225
29 H -0.222 1.222
30 C -0.143 4.143
31 H 0.080 0.920
32 C 0.013 3.987
33 H 0.100 0.900
34 H 0.096 0.904
35 H 0.104 0.896
36 H 0.116 0.884
37 H 0.108 0.892
38 H 0.106 0.894
39 H 0.080 0.920
40 H 0.088 0.912
41 H 0.134 0.866
42 H 0.124 0.876
43 H 0.133 0.867
44 H 0.101 0.899
45 H 0.112 0.888
46 H 0.087 0.913
47 H 0.085 0.915
48 H 0.064 0.936
49 H 0.203 0.797
50 H 0.058 0.942
51 H 0.062 0.938
52 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 18.481 24.601 6.407 31.429
hybrid contribution -0.753 -1.842 0.034 1.991
sum 17.728 22.759 6.441 29.559
Atomic orbital electron populations
1.20284 0.85810 1.03919 1.03612 1.22607 0.97854 0.90354 0.98363
1.77237 0.87700 1.23212 1.27514 1.46188 1.07060 1.05255 1.59756
0.70525 1.21351 0.97625 0.84988 0.98899 1.20636 0.91886 0.97990
1.04857 1.19731 0.91779 0.95770 1.18918 1.19444 1.01593 0.89645
0.94772 1.21626 1.04429 0.89358 0.99903 1.21182 0.76403 0.89750
0.81405 1.90694 1.54368 1.69923 1.32256 1.49989 1.66246 1.12719
1.06929 1.21978 1.03320 0.95362 0.79316 1.22591 0.98511 0.95383
0.95835 0.88647 1.21810 1.02165 0.94721 0.93696 1.23587 1.00455
0.96089 0.97701 1.20224 0.87835 0.90471 0.93554 0.93797 1.42715
1.03698 1.07383 1.83586 1.19653 0.92667 0.87143 1.37044 0.90604
1.25535 0.95313 1.02221 1.04054 1.69823 0.97181 1.36760 1.58398
0.85126 0.77700 0.80582 0.76702 1.18926 1.22484 1.22158 1.21830
1.00441 0.98509 0.93506 0.91964 1.20742 0.98534 0.83403 0.96028
0.90013 0.90435 0.89641 0.88359 0.89229 0.89415 0.91986 0.91185
0.86641 0.87572 0.86666 0.89876 0.88837 0.91262 0.91550 0.93566
0.79677 0.94211 0.93761 0.92340
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.15 10.12 71.23 0.72 -0.43 16
2 C 0.07 1.41 7.22 43.10 0.31 1.72 16
3 N -0.33 -6.78 12.70 -47.38 -0.60 -7.38 16
4 N -0.47 -6.69 7.36 -48.00 -0.35 -7.04 16
5 H 0.45 3.46 8.96 -213.32 -1.91 1.55 16
6 C 0.10 1.35 7.21 41.41 0.30 1.65 16
7 C -0.10 -0.62 10.22 71.24 0.73 0.11 16
8 C -0.25 -4.25 5.35 -20.14 -0.11 -4.36 16
9 C -0.02 -0.28 4.45 29.85 0.13 -0.14 16
10 C -0.11 -1.80 4.74 29.85 0.14 -1.66 16
11 C 0.52 13.24 7.88 87.65 0.69 13.93 16
12 O -0.59 -20.60 16.35 -3.04 -0.05 -20.65 16
13 N -0.62 -15.33 3.43 -815.11 -2.79 -18.12 16
14 C 0.12 2.02 6.48 85.29 0.55 2.58 16
15 C -0.10 -2.13 3.14 -9.98 -0.03 -2.16 16
16 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16
17 C -0.09 -1.79 6.63 31.35 0.21 -1.59 16
18 C -0.14 -4.24 6.73 32.80 0.22 -4.02 16
19 C 0.19 7.01 3.43 44.98 0.15 7.16 16
20 H 0.04 1.70 8.12 -2.38 -0.02 1.68 16
21 N -0.73 -36.37 5.12 -323.00 -1.65 -38.02 16
22 C -0.23 -12.81 9.98 84.03 0.84 -11.97 16
23 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16
24 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16
25 N -0.97 -59.80 13.06 21.65 0.28 -59.51 16
26 Si 0.97 46.41 29.55 68.60 2.03 48.44 16
27 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16
28 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16
29 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16
30 C -0.12 -3.77 2.18 -11.19 -0.02 -3.79 16
31 H 0.06 2.08 7.75 -2.38 -0.02 2.07 16
32 C 0.14 4.27 6.82 84.78 0.58 4.85 16
33 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16
34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16
35 H 0.08 1.14 7.92 -2.39 -0.02 1.12 16
36 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16
37 H 0.09 0.26 8.14 -2.39 -0.02 0.25 16
38 H 0.09 0.66 7.14 -2.39 -0.02 0.64 16
39 H 0.06 1.30 7.88 -2.38 -0.02 1.28 16
40 H 0.07 1.31 7.10 -2.39 -0.02 1.29 16
41 H 0.12 1.26 7.91 -2.39 -0.02 1.24 16
42 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16
43 H 0.12 1.12 7.58 -2.39 -0.02 1.10 16
44 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16
45 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
46 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
47 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
48 H 0.05 1.69 7.98 -2.39 -0.02 1.67 16
49 H 0.37 20.02 7.63 -92.71 -0.71 19.32 16
50 H 0.25 14.93 8.31 -92.71 -0.77 14.15 16
51 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16
52 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
Total: -1.00 -77.15 416.75 1.05 -76.11
By element:
Atomic # 1 Polarization: 30.11 SS G_CDS: -1.69 Total: 28.42 kcal
Atomic # 6 Polarization: -8.12 SS G_CDS: 5.88 Total: -2.24 kcal
Atomic # 7 Polarization: -124.96 SS G_CDS: -5.12 Total: -130.08 kcal
Atomic # 8 Polarization: -20.60 SS G_CDS: -0.05 Total: -20.65 kcal
Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal
Total: -77.15 1.05 -76.11 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001026418523.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 103.353 kcal
(2) G-P(sol) polarization free energy of solvation -77.154 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.200 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.108 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.245 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds