Wall clock time and date at job start Wed Apr 1 2020 03:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.89885 * 2 1 4 4 N 1.40089 * 108.20495 * 180.02562 * 3 2 1 5 5 H 0.96998 * 126.03720 * 179.97438 * 4 3 2 6 6 C 1.34943 * 107.92423 * 359.76012 * 4 3 2 7 7 C 1.50705 * 126.12878 * 180.23895 * 6 4 3 8 8 C 1.35318 * 107.75059 * 0.38702 * 6 4 3 9 9 C 1.50701 * 126.04317 * 179.87337 * 8 6 4 10 10 C 1.52991 * 109.47181 * 269.71437 * 9 8 6 11 11 C 1.50701 * 109.47181 * 179.97438 * 10 9 8 12 12 O 1.21285 * 119.99901 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00292 * 179.97438 * 11 10 9 14 14 C 1.47219 * 126.70001 * 0.02898 * 13 11 10 15 15 C 1.53783 * 106.37964 * 148.71921 * 14 13 11 16 16 H 1.09003 * 112.37958 * 256.84534 * 15 14 13 17 17 C 1.54320 * 109.06594 * 132.42726 * 15 14 13 18 18 C 1.55054 * 103.93621 * 222.02935 * 17 15 14 19 19 C 1.54199 * 102.50369 * 39.43730 * 18 17 15 20 20 H 1.09001 * 109.36115 * 79.27050 * 19 18 17 21 21 N 1.46503 * 111.31842 * 201.76545 * 19 18 17 22 22 C 1.36945 * 119.99803 * 270.47874 * 21 19 18 23 23 H 1.07998 * 119.99553 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00238 * 180.02562 * 22 21 19 25 25 N 1.31616 * 119.99709 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99989 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47551 * 89.99655 * 26 24 22 28 28 H 1.48506 * 109.46861 * 209.99494 * 26 24 22 29 29 H 1.48498 * 109.47416 * 329.99339 * 26 24 22 30 30 C 1.54322 * 104.34538 * 320.99774 * 19 18 17 31 31 H 1.09002 * 111.69404 * 261.64292 * 30 19 18 32 32 C 1.47213 * 126.70691 * 180.02562 * 13 11 10 33 33 H 1.08996 * 109.47109 * 269.97651 * 1 2 3 34 34 H 1.09004 * 109.47069 * 29.97627 * 1 2 3 35 35 H 1.08999 * 109.46938 * 149.97696 * 1 2 3 36 36 H 1.09004 * 109.46545 * 270.17893 * 7 6 4 37 37 H 1.08997 * 109.46655 * 30.17088 * 7 6 4 38 38 H 1.08994 * 109.47640 * 150.17394 * 7 6 4 39 39 H 1.09003 * 109.46976 * 149.71514 * 9 8 6 40 40 H 1.09001 * 109.46878 * 29.71634 * 9 8 6 41 41 H 1.08997 * 109.47244 * 59.99715 * 10 9 8 42 42 H 1.09001 * 109.47375 * 299.99892 * 10 9 8 43 43 H 1.09000 * 110.07800 * 29.48378 * 14 13 11 44 44 H 1.09002 * 110.11939 * 267.97231 * 14 13 11 45 45 H 1.09004 * 110.53176 * 340.64285 * 17 15 14 46 46 H 1.08994 * 110.53419 * 103.41550 * 17 15 14 47 47 H 1.08997 * 110.90513 * 158.25574 * 18 17 15 48 48 H 1.08996 * 110.90212 * 281.82335 * 18 17 15 49 49 H 0.96998 * 120.00533 * 90.47712 * 21 19 18 50 50 H 0.97004 * 119.99842 * 180.02562 * 25 24 22 51 51 H 1.08994 * 110.07282 * 92.05217 * 32 13 11 52 52 H 1.09005 * 110.07122 * 330.51365 * 32 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0006 5 1 4.3908 1.2079 -0.0011 6 6 3.6142 -0.7153 0.0044 7 6 4.8350 -1.5989 0.0108 8 6 2.3271 -1.1331 -0.0006 9 6 1.8599 -2.5658 -0.0004 10 6 1.7014 -3.0507 -1.4427 11 6 1.2348 -4.4837 -1.4425 12 8 1.0470 -5.0601 -0.3921 13 7 1.0251 -5.1243 -2.6096 14 6 1.2048 -4.5707 -3.9618 15 6 1.6266 -5.7462 -4.8591 16 1 2.6939 -5.7370 -5.0806 17 6 0.7767 -5.7275 -6.1470 18 6 0.4207 -7.2184 -6.3811 19 6 0.1452 -7.7244 -4.9508 20 1 -0.8563 -7.4201 -4.6465 21 7 0.2902 -9.1796 -4.8635 22 6 -0.7879 -9.9905 -5.0996 23 1 -1.7449 -9.5571 -5.3498 24 6 -0.6507 -11.3693 -5.0164 25 7 0.5156 -11.8973 -4.7110 26 14 -2.1210 -12.4753 -5.3392 27 1 -2.1759 -12.8171 -6.7832 28 1 -1.9886 -13.7203 -4.5406 29 1 -3.3675 -11.7680 -4.9502 30 6 1.2114 -7.0214 -4.0845 31 1 2.0642 -7.6714 -3.8888 32 6 0.5717 -6.5144 -2.7812 33 1 -0.3633 -0.0004 1.0276 34 1 -0.3633 0.8902 -0.5135 35 1 -0.3633 -0.8898 -0.5142 36 1 5.1338 -1.8131 -1.0154 37 1 5.6489 -1.0903 0.5275 38 1 4.6054 -2.5323 0.5248 39 1 0.9013 -2.6353 0.5137 40 1 2.5936 -3.1871 0.5133 41 1 2.6599 -2.9812 -1.9569 42 1 0.9677 -2.4294 -1.9564 43 1 1.9835 -3.8080 -3.9535 44 1 0.2677 -4.1442 -4.3199 45 1 -0.1277 -5.1370 -5.9998 46 1 1.3574 -5.3373 -6.9828 47 1 -0.4640 -7.3128 -7.0108 48 1 1.2638 -7.7560 -6.8149 49 1 1.1497 -9.5688 -4.6385 50 1 0.6115 -12.8609 -4.6532 51 1 -0.5149 -6.5464 -2.8606 52 1 0.9040 -7.1228 -1.9400 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026418526.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:36 Heat of formation + Delta-G solvation = 29.838093 kcal Electronic energy + Delta-G solvation = -30333.103177 eV Core-core repulsion = 26333.268935 eV Total energy + Delta-G solvation = -3999.834241 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68491 -40.30681 -38.52488 -35.21065 -34.40327 -33.67249 -33.36870 -31.08889 -30.85957 -29.48465 -28.47066 -28.16777 -27.32741 -25.24671 -24.46991 -23.09739 -22.60300 -20.46549 -20.23462 -19.53426 -19.17840 -18.85993 -17.68430 -17.21593 -16.83604 -16.07861 -15.70650 -15.41107 -15.14434 -14.69738 -14.25237 -14.16942 -13.88796 -13.77024 -13.65790 -13.38512 -13.07570 -13.03048 -12.97560 -12.73666 -12.63543 -12.47415 -12.38097 -12.26268 -12.01735 -11.82585 -11.65282 -11.24381 -11.17648 -10.87025 -10.79663 -10.70070 -10.67993 -10.38170 -10.28931 -10.19634 -9.93857 -9.74075 -9.64407 -9.53685 -8.88618 -8.63980 -8.57512 -6.96023 -5.77410 -3.06211 1.53482 2.37808 2.53507 2.70563 3.10934 3.43525 3.49039 3.50571 4.29163 4.32753 4.47971 4.57173 4.62983 4.67016 4.82482 4.87951 4.89529 4.98075 5.04599 5.09907 5.25987 5.30347 5.35345 5.38324 5.43371 5.44024 5.45379 5.50322 5.57604 5.62368 5.67896 5.77242 5.78983 5.88211 5.94145 5.97931 6.01719 6.05463 6.08014 6.23119 6.26635 6.34828 6.41128 6.44655 6.55488 6.65233 6.79848 6.97286 7.02553 7.39938 7.65588 7.70064 8.24574 8.41149 9.52341 10.09662 10.43651 11.45112 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.001968 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.839949 B =14226.496802 C =14446.329858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.086 3.914 3 N -0.298 5.298 4 N -0.479 5.479 5 H 0.437 0.563 6 C 0.091 3.909 7 C -0.096 4.096 8 C -0.232 4.232 9 C -0.024 4.024 10 C -0.128 4.128 11 C 0.526 3.474 12 O -0.543 6.543 13 N -0.619 5.619 14 C 0.106 3.894 15 C -0.101 4.101 16 H 0.085 0.915 17 C -0.116 4.116 18 C -0.144 4.144 19 C 0.185 3.815 20 H 0.055 0.945 21 N -0.719 5.719 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 C -0.105 4.105 31 H 0.087 0.913 32 C 0.115 3.885 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.065 0.935 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.070 0.930 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.580 26.027 5.473 27.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 N -0.122 5.122 4 N -0.187 5.187 5 H 0.280 0.720 6 C -0.037 4.037 7 C -0.155 4.155 8 C -0.243 4.243 9 C -0.063 4.063 10 C -0.168 4.168 11 C 0.315 3.685 12 O -0.421 6.421 13 N -0.352 5.352 14 C -0.017 4.017 15 C -0.121 4.121 16 H 0.103 0.897 17 C -0.154 4.154 18 C -0.185 4.185 19 C 0.074 3.926 20 H 0.073 0.927 21 N -0.359 5.359 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.126 4.126 31 H 0.106 0.894 32 C -0.007 4.007 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.088 0.912 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.330 26.929 6.131 28.574 hybrid contribution 0.068 -1.296 -0.328 1.339 sum 7.398 25.633 5.803 27.303 Atomic orbital electron populations 1.20225 0.86660 1.03446 1.03229 1.22272 0.96988 0.90185 0.98655 1.77288 0.86488 1.22368 1.26037 1.46145 1.07293 1.04840 1.60407 0.71978 1.20925 0.97045 0.84881 1.00872 1.20517 0.92716 0.98621 1.03626 1.19731 0.91113 0.96293 1.17202 1.19591 1.02586 0.89396 0.94702 1.21634 1.02958 0.92572 0.99645 1.20385 0.77333 0.88550 0.82197 1.90716 1.52317 1.68549 1.30481 1.48714 1.66588 1.14371 1.05537 1.22287 1.00908 0.96516 0.81978 1.22566 1.00193 0.93987 0.95315 0.89669 1.22493 0.98640 0.98465 0.95832 1.23156 1.01288 0.93353 1.00672 1.21002 0.95134 0.85205 0.91285 0.92724 1.42420 1.11290 0.98844 1.83382 1.19233 0.90239 0.87983 1.39599 0.91182 1.24742 0.96865 0.96772 1.02534 1.69657 1.22485 1.10806 1.55079 0.86206 0.82027 0.80467 0.77587 1.21774 1.21798 1.20748 1.22893 0.99774 0.95847 0.94052 0.89423 1.22133 0.99012 0.81165 0.98378 0.90340 0.90859 0.90185 0.89963 0.91094 0.89173 0.90324 0.90605 0.89318 0.89142 0.91109 0.91126 0.91677 0.92193 0.92093 0.91657 0.78171 0.93506 0.91153 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.12 36.00 0.36 -0.21 16 2 C 0.09 0.85 7.22 -82.40 -0.59 0.26 16 3 N -0.30 -3.19 12.70 33.67 0.43 -2.77 16 4 N -0.48 -3.87 7.36 33.48 0.25 -3.62 16 5 H 0.44 2.17 8.96 -182.61 -1.64 0.53 16 6 C 0.09 0.73 7.21 -82.26 -0.59 0.13 16 7 C -0.10 -0.49 10.22 36.01 0.37 -0.12 16 8 C -0.23 -2.16 5.35 -105.05 -0.56 -2.73 16 9 C -0.02 -0.23 4.45 -27.89 -0.12 -0.35 16 10 C -0.13 -1.19 4.66 -27.89 -0.13 -1.32 16 11 C 0.53 7.04 7.88 -10.99 -0.09 6.95 16 12 O -0.54 -9.39 16.21 5.55 0.09 -9.30 16 13 N -0.62 -8.13 3.32 -171.57 -0.57 -8.70 16 14 C 0.11 1.10 6.38 -3.24 -0.02 1.08 16 15 C -0.10 -1.20 3.91 -88.53 -0.35 -1.55 16 16 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 17 C -0.12 -1.39 6.36 -24.95 -0.16 -1.54 16 18 C -0.14 -2.33 6.58 -25.02 -0.16 -2.50 16 19 C 0.18 3.43 2.98 -66.61 -0.20 3.23 16 20 H 0.05 1.05 7.20 -51.93 -0.37 0.68 16 21 N -0.72 -17.36 5.24 -52.14 -0.27 -17.64 16 22 C -0.24 -6.49 9.96 -15.06 -0.15 -6.64 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 26 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 C -0.11 -1.64 3.57 -88.53 -0.32 -1.95 16 31 H 0.09 1.48 7.81 -51.93 -0.41 1.07 16 32 C 0.12 1.81 6.56 -3.25 -0.02 1.79 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.54 7.92 -51.93 -0.41 0.13 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.09 0.48 7.14 -51.93 -0.37 0.11 16 39 H 0.08 0.81 7.88 -51.93 -0.41 0.41 16 40 H 0.08 0.76 7.09 -51.93 -0.37 0.39 16 41 H 0.09 0.71 7.86 -51.93 -0.41 0.30 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.57 7.31 -51.93 -0.38 0.19 16 44 H 0.07 0.67 7.13 -51.93 -0.37 0.30 16 45 H 0.06 0.72 7.19 -51.93 -0.37 0.34 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.38 9.92 7.61 -40.82 -0.31 9.61 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.07 1.15 7.19 -51.93 -0.37 0.77 16 52 H 0.08 1.38 7.92 -51.93 -0.41 0.97 16 LS Contribution 413.30 15.07 6.23 6.23 Total: -1.00 -33.99 413.30 -10.93 -44.93 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -9.95 Total: 6.72 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -2.83 Total: -5.95 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.56 Total: -59.84 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.99 -10.93 -44.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026418526.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.763 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds