Wall clock time and date at job start Wed Apr 1 2020 03:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.89885 * 2 1 4 4 N 1.40089 * 108.20495 * 180.02562 * 3 2 1 5 5 H 0.96998 * 126.03720 * 179.97438 * 4 3 2 6 6 C 1.34943 * 107.92423 * 359.76012 * 4 3 2 7 7 C 1.50705 * 126.12878 * 180.23895 * 6 4 3 8 8 C 1.35318 * 107.75059 * 0.38702 * 6 4 3 9 9 C 1.50701 * 126.04317 * 179.87337 * 8 6 4 10 10 C 1.52991 * 109.47181 * 269.71437 * 9 8 6 11 11 C 1.50701 * 109.47181 * 179.97438 * 10 9 8 12 12 O 1.21285 * 119.99901 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00292 * 179.97438 * 11 10 9 14 14 C 1.47219 * 126.70001 * 0.02898 * 13 11 10 15 15 C 1.53783 * 106.37964 * 148.71921 * 14 13 11 16 16 H 1.09003 * 112.37958 * 256.84534 * 15 14 13 17 17 C 1.54320 * 109.06594 * 132.42726 * 15 14 13 18 18 C 1.55054 * 103.93621 * 222.02935 * 17 15 14 19 19 C 1.54199 * 102.50369 * 39.43730 * 18 17 15 20 20 H 1.09001 * 109.36115 * 79.27050 * 19 18 17 21 21 N 1.46503 * 111.31842 * 201.76545 * 19 18 17 22 22 C 1.36945 * 119.99803 * 270.47874 * 21 19 18 23 23 H 1.07998 * 119.99553 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00238 * 180.02562 * 22 21 19 25 25 N 1.31616 * 119.99709 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99989 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47551 * 89.99655 * 26 24 22 28 28 H 1.48506 * 109.46861 * 209.99494 * 26 24 22 29 29 H 1.48498 * 109.47416 * 329.99339 * 26 24 22 30 30 C 1.54322 * 104.34538 * 320.99774 * 19 18 17 31 31 H 1.09002 * 111.69404 * 261.64292 * 30 19 18 32 32 C 1.47213 * 126.70691 * 180.02562 * 13 11 10 33 33 H 1.08996 * 109.47109 * 269.97651 * 1 2 3 34 34 H 1.09004 * 109.47069 * 29.97627 * 1 2 3 35 35 H 1.08999 * 109.46938 * 149.97696 * 1 2 3 36 36 H 1.09004 * 109.46545 * 270.17893 * 7 6 4 37 37 H 1.08997 * 109.46655 * 30.17088 * 7 6 4 38 38 H 1.08994 * 109.47640 * 150.17394 * 7 6 4 39 39 H 1.09003 * 109.46976 * 149.71514 * 9 8 6 40 40 H 1.09001 * 109.46878 * 29.71634 * 9 8 6 41 41 H 1.08997 * 109.47244 * 59.99715 * 10 9 8 42 42 H 1.09001 * 109.47375 * 299.99892 * 10 9 8 43 43 H 1.09000 * 110.07800 * 29.48378 * 14 13 11 44 44 H 1.09002 * 110.11939 * 267.97231 * 14 13 11 45 45 H 1.09004 * 110.53176 * 340.64285 * 17 15 14 46 46 H 1.08994 * 110.53419 * 103.41550 * 17 15 14 47 47 H 1.08997 * 110.90513 * 158.25574 * 18 17 15 48 48 H 1.08996 * 110.90212 * 281.82335 * 18 17 15 49 49 H 0.96998 * 120.00533 * 90.47712 * 21 19 18 50 50 H 0.97004 * 119.99842 * 180.02562 * 25 24 22 51 51 H 1.08994 * 110.07282 * 92.05217 * 32 13 11 52 52 H 1.09005 * 110.07122 * 330.51365 * 32 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0006 5 1 4.3908 1.2079 -0.0011 6 6 3.6142 -0.7153 0.0044 7 6 4.8350 -1.5989 0.0108 8 6 2.3271 -1.1331 -0.0006 9 6 1.8599 -2.5658 -0.0004 10 6 1.7014 -3.0507 -1.4427 11 6 1.2348 -4.4837 -1.4425 12 8 1.0470 -5.0601 -0.3921 13 7 1.0251 -5.1243 -2.6096 14 6 1.2048 -4.5707 -3.9618 15 6 1.6266 -5.7462 -4.8591 16 1 2.6939 -5.7370 -5.0806 17 6 0.7767 -5.7275 -6.1470 18 6 0.4207 -7.2184 -6.3811 19 6 0.1452 -7.7244 -4.9508 20 1 -0.8563 -7.4201 -4.6465 21 7 0.2902 -9.1796 -4.8635 22 6 -0.7879 -9.9905 -5.0996 23 1 -1.7449 -9.5571 -5.3498 24 6 -0.6507 -11.3693 -5.0164 25 7 0.5156 -11.8973 -4.7110 26 14 -2.1210 -12.4753 -5.3392 27 1 -2.1759 -12.8171 -6.7832 28 1 -1.9886 -13.7203 -4.5406 29 1 -3.3675 -11.7680 -4.9502 30 6 1.2114 -7.0214 -4.0845 31 1 2.0642 -7.6714 -3.8888 32 6 0.5717 -6.5144 -2.7812 33 1 -0.3633 -0.0004 1.0276 34 1 -0.3633 0.8902 -0.5135 35 1 -0.3633 -0.8898 -0.5142 36 1 5.1338 -1.8131 -1.0154 37 1 5.6489 -1.0903 0.5275 38 1 4.6054 -2.5323 0.5248 39 1 0.9013 -2.6353 0.5137 40 1 2.5936 -3.1871 0.5133 41 1 2.6599 -2.9812 -1.9569 42 1 0.9677 -2.4294 -1.9564 43 1 1.9835 -3.8080 -3.9535 44 1 0.2677 -4.1442 -4.3199 45 1 -0.1277 -5.1370 -5.9998 46 1 1.3574 -5.3373 -6.9828 47 1 -0.4640 -7.3128 -7.0108 48 1 1.2638 -7.7560 -6.8149 49 1 1.1497 -9.5688 -4.6385 50 1 0.6115 -12.8609 -4.6532 51 1 -0.5149 -6.5464 -2.8606 52 1 0.9040 -7.1228 -1.9400 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026418526.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:35 Heat of formation + Delta-G solvation = 8.046744 kcal Electronic energy + Delta-G solvation = -30334.048120 eV Core-core repulsion = 26333.268935 eV Total energy + Delta-G solvation = -4000.779185 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32524 -41.42062 -39.69431 -36.66894 -35.16360 -35.00846 -34.25457 -32.71369 -31.73979 -30.57286 -29.78217 -28.81822 -27.95343 -26.73574 -25.43070 -24.69408 -23.68337 -21.54573 -21.06894 -20.42017 -20.21278 -19.90871 -19.07839 -18.38497 -17.87568 -17.23864 -16.73521 -16.61763 -16.01242 -15.87753 -15.80899 -15.11243 -15.01952 -14.78250 -14.59690 -14.44693 -14.12028 -13.92416 -13.86041 -13.54406 -13.38438 -13.35245 -13.24190 -13.17959 -13.08136 -12.91162 -12.83767 -12.64476 -12.59071 -12.29728 -12.10109 -11.96412 -11.92048 -11.67858 -11.51926 -11.45204 -11.37537 -11.32680 -10.93188 -10.75236 -10.17519 -9.67164 -9.29738 -8.96098 -7.93153 -5.20642 0.91673 1.47112 1.48471 1.56647 1.67791 1.68736 1.98837 2.11522 2.57013 3.35074 3.44873 3.54769 3.74510 3.76136 3.77535 3.92879 4.09521 4.15221 4.21306 4.25352 4.30754 4.41923 4.50297 4.54209 4.54555 4.61730 4.65872 4.68009 4.69834 4.74916 4.79781 4.82797 4.84405 4.91636 4.98756 5.04959 5.10713 5.12466 5.14784 5.18568 5.23401 5.28464 5.34057 5.39655 5.43877 5.50426 5.55270 5.64302 5.77221 6.29709 6.46985 6.64564 6.76675 7.20538 7.35215 8.13239 8.34566 9.30429 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.001968 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.839949 B =14226.496802 C =14446.329858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.075 3.925 3 N -0.332 5.332 4 N -0.473 5.473 5 H 0.448 0.552 6 C 0.100 3.900 7 C -0.096 4.096 8 C -0.251 4.251 9 C -0.016 4.016 10 C -0.113 4.113 11 C 0.522 3.478 12 O -0.592 6.592 13 N -0.617 5.617 14 C 0.107 3.893 15 C -0.091 4.091 16 H 0.103 0.897 17 C -0.101 4.101 18 C -0.140 4.140 19 C 0.175 3.825 20 H 0.047 0.953 21 N -0.734 5.734 22 C -0.235 4.235 23 H 0.075 0.925 24 C -0.079 4.079 25 N -0.970 5.970 26 Si 0.969 3.031 27 H -0.287 1.287 28 H -0.298 1.298 29 H -0.270 1.270 30 C -0.100 4.100 31 H 0.068 0.932 32 C 0.120 3.880 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.371 0.629 50 H 0.249 0.751 51 H 0.060 0.940 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.129 28.995 4.136 30.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 N -0.156 5.156 4 N -0.183 5.183 5 H 0.295 0.705 6 C -0.029 4.029 7 C -0.154 4.154 8 C -0.262 4.262 9 C -0.055 4.055 10 C -0.153 4.153 11 C 0.313 3.687 12 O -0.472 6.472 13 N -0.350 5.350 14 C -0.015 4.015 15 C -0.111 4.111 16 H 0.121 0.879 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.066 3.934 20 H 0.065 0.935 21 N -0.373 5.373 22 C -0.367 4.367 23 H 0.093 0.907 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.799 3.201 27 H -0.214 1.214 28 H -0.225 1.225 29 H -0.195 1.195 30 C -0.120 4.120 31 H 0.086 0.914 32 C -0.004 4.004 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.203 0.797 50 H 0.058 0.942 51 H 0.078 0.922 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.869 29.989 4.756 31.367 hybrid contribution -0.080 -2.171 0.128 2.176 sum 7.789 27.818 4.885 29.298 Atomic orbital electron populations 1.20291 0.85646 1.04009 1.03643 1.22624 0.97927 0.90247 0.98298 1.77235 0.87646 1.23227 1.27493 1.46186 1.07099 1.05211 1.59784 0.70547 1.21334 0.97623 0.85012 0.98973 1.20630 0.92001 0.97998 1.04798 1.19730 0.91756 0.95784 1.18901 1.19443 1.01635 0.89629 0.94782 1.21623 1.04431 0.89326 0.99917 1.21197 0.76266 0.89862 0.81336 1.90698 1.54355 1.69905 1.32280 1.48783 1.66090 1.13118 1.07008 1.22508 1.03133 0.96284 0.79554 1.22582 1.01291 0.92187 0.95026 0.87908 1.22448 0.99791 0.95012 0.96629 1.22987 1.00379 0.96610 0.98082 1.21280 0.95858 0.82508 0.93756 0.93514 1.42630 1.10005 1.01145 1.83550 1.19609 0.91066 0.88553 1.37426 0.90720 1.25528 0.99404 0.98336 1.03804 1.69814 1.24463 1.10490 1.57356 0.85194 0.79406 0.78290 0.77236 1.21373 1.22522 1.19529 1.22702 0.98012 0.97255 0.94078 0.91357 1.21860 0.98323 0.82893 0.97304 0.90022 0.90372 0.89475 0.88451 0.89238 0.89526 0.91757 0.91448 0.86891 0.87157 0.87373 0.89357 0.89927 0.89409 0.92819 0.93299 0.79661 0.94185 0.92214 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.12 71.24 0.72 -0.35 16 2 C 0.08 1.39 7.22 43.10 0.31 1.70 16 3 N -0.33 -6.65 12.70 -47.38 -0.60 -7.26 16 4 N -0.47 -6.71 7.36 -48.00 -0.35 -7.06 16 5 H 0.45 3.52 8.96 -213.33 -1.91 1.61 16 6 C 0.10 1.36 7.21 41.41 0.30 1.66 16 7 C -0.10 -0.70 10.22 71.24 0.73 0.03 16 8 C -0.25 -4.22 5.35 -20.14 -0.11 -4.33 16 9 C -0.02 -0.28 4.45 29.85 0.13 -0.15 16 10 C -0.11 -1.78 4.66 29.85 0.14 -1.64 16 11 C 0.52 13.27 7.88 87.66 0.69 13.96 16 12 O -0.59 -20.78 16.21 -3.05 -0.05 -20.83 16 13 N -0.62 -15.12 3.32 -815.13 -2.71 -17.83 16 14 C 0.11 1.74 6.38 86.51 0.55 2.29 16 15 C -0.09 -1.87 3.91 -9.44 -0.04 -1.91 16 16 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 17 C -0.10 -2.01 6.36 31.75 0.20 -1.81 16 18 C -0.14 -4.38 6.58 31.70 0.21 -4.17 16 19 C 0.17 6.53 2.98 45.85 0.14 6.67 16 20 H 0.05 1.81 7.20 -2.39 -0.02 1.80 16 21 N -0.73 -36.58 5.24 -318.89 -1.67 -38.26 16 22 C -0.23 -12.97 9.96 84.03 0.84 -12.13 16 23 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 25 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 26 Si 0.97 46.58 29.55 68.60 2.03 48.60 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 28 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 29 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 30 C -0.10 -3.09 3.57 -9.44 -0.03 -3.12 16 31 H 0.07 2.38 7.81 -2.39 -0.02 2.36 16 32 C 0.12 3.81 6.56 86.51 0.57 4.37 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.09 1.04 7.92 -2.39 -0.02 1.02 16 36 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.09 0.74 7.14 -2.39 -0.02 0.72 16 39 H 0.06 1.31 7.88 -2.39 -0.02 1.29 16 40 H 0.07 1.30 7.09 -2.39 -0.02 1.28 16 41 H 0.11 1.28 7.86 -2.39 -0.02 1.26 16 42 H 0.11 1.36 8.14 -2.39 -0.02 1.35 16 43 H 0.11 1.06 7.31 -2.39 -0.02 1.05 16 44 H 0.09 1.21 7.13 -2.39 -0.02 1.20 16 45 H 0.08 1.42 7.19 -2.39 -0.02 1.41 16 46 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.37 20.09 7.61 -92.71 -0.71 19.39 16 50 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 51 H 0.06 2.00 7.19 -2.39 -0.02 1.99 16 52 H 0.05 1.75 7.92 -2.38 -0.02 1.73 16 Total: -1.00 -77.61 413.30 1.06 -76.55 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -1.68 Total: 28.69 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 5.81 Total: -3.01 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -5.05 Total: -130.01 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.83 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -77.61 1.06 -76.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026418526.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.600 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds