Wall clock time and date at job start Wed Apr 1 2020 04:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34855 * 125.96228 * 2 1 4 4 N 1.36314 * 106.68844 * 179.88740 * 3 2 1 5 5 C 1.35427 * 107.39699 * 0.29152 * 4 3 2 6 6 N 1.30091 * 108.62825 * 359.86089 * 5 4 3 7 7 C 1.51042 * 123.97900 * 179.89767 * 5 4 3 8 8 C 1.53403 * 108.21472 * 15.92956 * 7 5 4 9 9 H 1.08994 * 109.54883 * 71.13722 * 8 7 5 10 10 C 1.50699 * 109.50734 * 191.25856 * 8 7 5 11 11 O 1.21282 * 120.00027 * 119.76203 * 10 8 7 12 12 N 1.34783 * 119.99983 * 299.75931 * 10 8 7 13 13 C 1.46495 * 119.99676 * 180.02562 * 12 10 8 14 14 C 1.53009 * 109.47192 * 274.99876 * 13 12 10 15 15 C 1.53006 * 109.46942 * 300.00364 * 14 13 12 16 16 C 1.52999 * 109.47157 * 300.00106 * 15 14 13 17 17 N 1.46497 * 109.47344 * 180.02562 * 16 15 14 18 18 C 1.36941 * 120.00082 * 84.99520 * 17 16 15 19 19 H 1.08003 * 119.99892 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00089 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00191 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00042 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47328 * 89.99572 * 22 20 18 24 24 H 1.48500 * 109.47284 * 209.99537 * 22 20 18 25 25 H 1.48496 * 109.47257 * 329.99652 * 22 20 18 26 26 C 1.52997 * 109.47362 * 59.99840 * 16 15 14 27 27 C 1.52997 * 109.47131 * 155.00198 * 13 12 10 28 28 C 1.53153 * 109.23494 * 311.18437 * 8 7 5 29 29 C 1.46476 * 127.78065 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47286 * 269.71412 * 1 2 3 31 31 H 1.09000 * 109.47522 * 29.71229 * 1 2 3 32 32 H 1.08998 * 109.47197 * 149.71395 * 1 2 3 33 33 H 1.08004 * 126.65790 * 0.03772 * 3 2 1 34 34 H 1.09008 * 109.71081 * 256.25152 * 7 5 4 35 35 H 1.08992 * 109.71489 * 135.61351 * 7 5 4 36 36 H 0.96999 * 119.99953 * 0.02562 * 12 10 8 37 37 H 1.09002 * 109.47583 * 34.99497 * 13 12 10 38 38 H 1.08995 * 109.47023 * 59.99794 * 14 13 12 39 39 H 1.08991 * 109.47166 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.46705 * 179.97438 * 15 14 13 41 41 H 1.09001 * 109.46935 * 59.99569 * 15 14 13 42 42 H 1.09005 * 109.46592 * 300.00045 * 16 15 14 43 43 H 0.96999 * 119.99900 * 264.99923 * 17 16 15 44 44 H 0.96996 * 120.00258 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.47410 * 180.02562 * 26 16 15 46 46 H 1.09001 * 109.47403 * 60.00124 * 26 16 15 47 47 H 1.09000 * 109.47677 * 179.97438 * 27 13 12 48 48 H 1.09001 * 109.46889 * 299.99572 * 27 13 12 49 49 H 1.09000 * 109.46651 * 309.48414 * 28 8 7 50 50 H 1.09002 * 109.46087 * 189.49803 * 28 8 7 51 51 H 1.09006 * 109.58100 * 317.21320 * 29 4 3 52 52 H 1.08999 * 109.58536 * 77.62639 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5856 0.6416 0.0026 5 6 3.5413 -0.7120 -0.0025 6 7 2.2956 -1.0869 -0.0050 7 6 4.7655 -1.5967 -0.0040 8 6 5.9743 -0.7434 0.4009 9 1 5.9068 -0.4946 1.4599 10 6 7.2433 -1.5148 0.1449 11 8 8.0735 -1.0786 -0.6240 12 7 7.4555 -2.6896 0.7706 13 6 8.6894 -3.4393 0.5221 14 6 8.5178 -4.3040 -0.7285 15 6 7.3604 -5.2821 -0.5173 16 6 7.6632 -6.1786 0.6850 17 7 6.5553 -7.1156 0.8868 18 6 6.5168 -8.2915 0.1861 19 1 7.3033 -8.5283 -0.5151 20 6 5.4668 -9.1791 0.3770 21 7 4.5084 -8.8908 1.2319 22 14 5.4145 -10.7835 -0.5783 23 1 6.1204 -11.8403 0.1898 24 1 4.0014 -11.1869 -0.7916 25 1 6.0803 -10.5988 -1.8928 26 6 7.8349 -5.3140 1.9355 27 6 8.9923 -4.3358 1.7243 28 6 5.9828 0.5447 -0.4276 29 6 4.8148 1.4382 0.0041 30 1 -0.3634 -0.0051 1.0276 31 1 -0.3634 0.8925 -0.5093 32 1 -0.3633 -0.8874 -0.5183 33 1 1.9763 2.1222 0.0006 34 1 4.9221 -2.0060 -1.0021 35 1 4.6329 -2.4090 0.7105 36 1 6.7914 -3.0387 1.3853 37 1 9.5140 -2.7424 0.3716 38 1 8.3020 -3.6653 -1.5850 39 1 9.4356 -4.8620 -0.9131 40 1 7.2379 -5.8978 -1.4084 41 1 6.4424 -4.7243 -0.3324 42 1 8.5813 -6.7364 0.5001 43 1 5.8491 -6.9031 1.5168 44 1 3.7745 -9.5108 1.3650 45 1 8.0511 -5.9527 2.7920 46 1 6.9169 -4.7562 2.1204 47 1 9.9101 -4.8940 1.5393 48 1 9.1146 -3.7198 2.6152 49 1 5.8800 0.2977 -1.4842 50 1 6.9227 1.0730 -0.2678 51 1 4.7127 2.2688 -0.6943 52 1 5.0000 1.8223 1.0072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026515153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:49 Heat of formation + Delta-G solvation = 12.986527 kcal Electronic energy + Delta-G solvation = -31182.634927 eV Core-core repulsion = 27182.069947 eV Total energy + Delta-G solvation = -4000.564980 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.52473 -40.36053 -38.28786 -36.48151 -34.68566 -33.68848 -32.63060 -31.70364 -30.72210 -30.45877 -29.15077 -27.80809 -27.16787 -24.40154 -23.79885 -23.22854 -22.23452 -21.10187 -20.82112 -20.27695 -19.34376 -18.89533 -17.42464 -17.13072 -17.00522 -16.13125 -15.64376 -15.49698 -15.25068 -14.54064 -14.48361 -14.40583 -14.15300 -13.95028 -13.83071 -13.58033 -13.45901 -13.18977 -13.02263 -12.66626 -12.48490 -12.38095 -12.28816 -12.08074 -11.89531 -11.87829 -11.66532 -11.51151 -11.41579 -11.00454 -10.85384 -10.82414 -10.41099 -10.17755 -10.12406 -10.00865 -9.86049 -9.71356 -9.65107 -9.56056 -8.98602 -8.82137 -8.32252 -6.92703 -5.73942 -3.02448 1.87049 2.49084 2.55404 2.97895 3.07046 3.45380 3.50899 3.52486 3.95017 4.16074 4.25149 4.28618 4.60463 4.68797 4.73980 4.78868 4.85587 4.91499 5.04507 5.06570 5.10429 5.12384 5.20468 5.40150 5.42634 5.50918 5.55045 5.58209 5.60744 5.69128 5.73121 5.74309 5.76521 5.85365 5.91021 5.93180 5.99890 6.07351 6.16201 6.24844 6.34170 6.47455 6.50851 6.63572 6.66982 6.74375 6.98312 7.00883 7.13891 7.46767 7.72827 8.03000 8.13952 8.44800 9.55896 10.13853 10.48009 11.48655 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009351 B = 0.003001 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.772587 B = 9327.319885 C =11712.247361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.003 4.003 3 C -0.058 4.058 4 N -0.458 5.458 5 C 0.216 3.784 6 N -0.479 5.479 7 C -0.025 4.025 8 C -0.113 4.113 9 H 0.103 0.897 10 C 0.523 3.477 11 O -0.542 6.542 12 N -0.713 5.713 13 C 0.148 3.852 14 C -0.128 4.128 15 C -0.132 4.132 16 C 0.178 3.822 17 N -0.725 5.725 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.115 4.115 29 C 0.105 3.895 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.173 0.827 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.403 0.597 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.067 0.933 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.083 0.917 50 H 0.100 0.900 51 H 0.093 0.907 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 24.606 0.807 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.132 4.132 3 C -0.191 4.191 4 N -0.141 5.141 5 C -0.047 4.047 6 N -0.198 5.198 7 C -0.064 4.064 8 C -0.135 4.135 9 H 0.121 0.879 10 C 0.308 3.692 11 O -0.419 6.419 12 N -0.365 5.365 13 C 0.044 3.956 14 C -0.167 4.167 15 C -0.173 4.173 16 C 0.068 3.932 17 N -0.365 5.365 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.163 4.163 27 C -0.161 4.161 28 C -0.153 4.153 29 C -0.018 4.018 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.190 0.810 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.239 0.761 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.216 0.784 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.082 0.918 49 H 0.101 0.899 50 H 0.119 0.881 51 H 0.111 0.889 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.677 24.035 0.156 24.184 hybrid contribution -0.492 -0.107 -0.041 0.506 sum 2.185 23.928 0.115 24.028 Atomic orbital electron populations 1.20008 0.87711 1.02539 1.02125 1.20830 0.96529 0.88271 1.07585 1.22262 0.82865 1.00278 1.13683 1.45381 1.06494 1.07398 1.54854 1.23061 0.94697 0.81392 1.05536 1.70010 0.99625 1.30300 1.19876 1.20141 0.85882 0.95468 1.04945 1.21445 0.93422 0.96039 1.02556 0.87854 1.20188 0.87469 0.81221 0.80316 1.90695 1.46373 1.69011 1.35863 1.46172 1.22551 1.21240 1.46506 1.20999 0.86238 0.92753 0.95632 1.21927 1.00265 0.97810 0.96738 1.22226 0.96700 0.97149 1.01215 1.20213 0.92245 0.89591 0.91136 1.42414 1.25107 1.18864 1.50124 1.19218 1.05600 0.94895 1.17161 0.91305 1.24722 0.97424 0.98911 0.99859 1.69651 1.12799 1.37132 1.38472 0.86231 0.76751 0.84016 0.79450 1.21814 1.21798 1.20816 1.21821 0.97079 0.97507 0.99934 1.21802 0.99971 0.97475 0.96843 1.21717 0.97989 0.94450 1.01103 1.22026 0.82083 0.94407 1.03251 0.91511 0.91576 0.91099 0.81022 0.88462 0.87757 0.76117 0.89957 0.92331 0.91436 0.92143 0.92748 0.93630 0.78379 0.93545 0.91457 0.92647 0.90361 0.91849 0.89861 0.88131 0.88863 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.42 36.00 0.38 -0.25 16 2 C 0.00 -0.04 7.10 -82.72 -0.59 -0.62 16 3 C -0.06 -0.59 11.55 -16.76 -0.19 -0.78 16 4 N -0.46 -4.63 3.13 -113.75 -0.36 -4.99 16 5 C 0.22 2.74 7.65 -155.24 -1.19 1.55 16 6 N -0.48 -7.26 11.24 -6.88 -0.08 -7.34 16 7 C -0.03 -0.28 5.47 -27.51 -0.15 -0.43 16 8 C -0.11 -1.01 2.55 -91.48 -0.23 -1.24 16 9 H 0.10 0.77 8.12 -51.93 -0.42 0.34 16 10 C 0.52 5.97 7.10 -10.98 -0.08 5.90 16 11 O -0.54 -7.85 15.49 5.56 0.09 -7.77 16 12 N -0.71 -7.91 4.14 -53.80 -0.22 -8.13 16 13 C 0.15 1.78 2.78 -67.93 -0.19 1.59 16 14 C -0.13 -1.79 5.60 -26.72 -0.15 -1.94 16 15 C -0.13 -2.26 5.34 -26.73 -0.14 -2.40 16 16 C 0.18 3.30 2.77 -67.93 -0.19 3.11 16 17 N -0.72 -17.54 5.12 -53.43 -0.27 -17.81 16 18 C -0.24 -6.51 9.93 -15.06 -0.15 -6.65 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 22 Si 0.90 22.48 29.55 -169.99 -5.02 17.45 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C -0.12 -1.82 5.22 -26.73 -0.14 -1.96 16 27 C -0.12 -1.40 5.61 -26.73 -0.15 -1.55 16 28 C -0.11 -0.90 4.67 -26.52 -0.12 -1.02 16 29 C 0.10 0.69 6.98 -3.92 -0.03 0.66 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.10 1.15 8.11 -51.92 -0.42 0.73 16 35 H 0.10 1.14 7.95 -51.93 -0.41 0.73 16 36 H 0.40 4.13 6.59 -40.82 -0.27 3.87 16 37 H 0.08 1.01 7.58 -51.93 -0.39 0.62 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.94 7.60 -51.93 -0.39 0.55 16 42 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 43 H 0.38 9.86 7.80 -40.82 -0.32 9.55 16 44 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 0.77 6.51 -51.93 -0.34 0.43 16 47 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 50 H 0.10 0.74 7.79 -51.93 -0.40 0.33 16 51 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 407.30 15.07 6.14 6.14 Total: -1.00 -34.51 407.30 -11.25 -45.76 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -8.83 Total: 10.52 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -3.41 Total: -6.51 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -0.21 Total: -65.59 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.09 Total: -7.77 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.51 -11.25 -45.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026515153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.747 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds