Wall clock time and date at job start Wed Apr 1 2020 04:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34855 * 125.96228 * 2 1 4 4 N 1.36314 * 106.68844 * 179.88740 * 3 2 1 5 5 C 1.35427 * 107.39699 * 0.29152 * 4 3 2 6 6 N 1.30091 * 108.62825 * 359.86089 * 5 4 3 7 7 C 1.51042 * 123.97900 * 179.89767 * 5 4 3 8 8 C 1.53403 * 108.21472 * 15.92956 * 7 5 4 9 9 H 1.08994 * 109.54883 * 71.13722 * 8 7 5 10 10 C 1.50699 * 109.50734 * 191.25856 * 8 7 5 11 11 O 1.21282 * 120.00027 * 119.76203 * 10 8 7 12 12 N 1.34783 * 119.99983 * 299.75931 * 10 8 7 13 13 C 1.46495 * 119.99676 * 180.02562 * 12 10 8 14 14 C 1.53009 * 109.47192 * 274.99876 * 13 12 10 15 15 C 1.53006 * 109.46942 * 300.00364 * 14 13 12 16 16 C 1.52999 * 109.47157 * 300.00106 * 15 14 13 17 17 N 1.46497 * 109.47344 * 180.02562 * 16 15 14 18 18 C 1.36941 * 120.00082 * 84.99520 * 17 16 15 19 19 H 1.08003 * 119.99892 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00089 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00191 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00042 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47328 * 89.99572 * 22 20 18 24 24 H 1.48500 * 109.47284 * 209.99537 * 22 20 18 25 25 H 1.48496 * 109.47257 * 329.99652 * 22 20 18 26 26 C 1.52997 * 109.47362 * 59.99840 * 16 15 14 27 27 C 1.52997 * 109.47131 * 155.00198 * 13 12 10 28 28 C 1.53153 * 109.23494 * 311.18437 * 8 7 5 29 29 C 1.46476 * 127.78065 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47286 * 269.71412 * 1 2 3 31 31 H 1.09000 * 109.47522 * 29.71229 * 1 2 3 32 32 H 1.08998 * 109.47197 * 149.71395 * 1 2 3 33 33 H 1.08004 * 126.65790 * 0.03772 * 3 2 1 34 34 H 1.09008 * 109.71081 * 256.25152 * 7 5 4 35 35 H 1.08992 * 109.71489 * 135.61351 * 7 5 4 36 36 H 0.96999 * 119.99953 * 0.02562 * 12 10 8 37 37 H 1.09002 * 109.47583 * 34.99497 * 13 12 10 38 38 H 1.08995 * 109.47023 * 59.99794 * 14 13 12 39 39 H 1.08991 * 109.47166 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.46705 * 179.97438 * 15 14 13 41 41 H 1.09001 * 109.46935 * 59.99569 * 15 14 13 42 42 H 1.09005 * 109.46592 * 300.00045 * 16 15 14 43 43 H 0.96999 * 119.99900 * 264.99923 * 17 16 15 44 44 H 0.96996 * 120.00258 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.47410 * 180.02562 * 26 16 15 46 46 H 1.09001 * 109.47403 * 60.00124 * 26 16 15 47 47 H 1.09000 * 109.47677 * 179.97438 * 27 13 12 48 48 H 1.09001 * 109.46889 * 299.99572 * 27 13 12 49 49 H 1.09000 * 109.46651 * 309.48414 * 28 8 7 50 50 H 1.09002 * 109.46087 * 189.49803 * 28 8 7 51 51 H 1.09006 * 109.58100 * 317.21320 * 29 4 3 52 52 H 1.08999 * 109.58536 * 77.62639 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5856 0.6416 0.0026 5 6 3.5413 -0.7120 -0.0025 6 7 2.2956 -1.0869 -0.0050 7 6 4.7655 -1.5967 -0.0040 8 6 5.9743 -0.7434 0.4009 9 1 5.9068 -0.4946 1.4599 10 6 7.2433 -1.5148 0.1449 11 8 8.0735 -1.0786 -0.6240 12 7 7.4555 -2.6896 0.7706 13 6 8.6894 -3.4393 0.5221 14 6 8.5178 -4.3040 -0.7285 15 6 7.3604 -5.2821 -0.5173 16 6 7.6632 -6.1786 0.6850 17 7 6.5553 -7.1156 0.8868 18 6 6.5168 -8.2915 0.1861 19 1 7.3033 -8.5283 -0.5151 20 6 5.4668 -9.1791 0.3770 21 7 4.5084 -8.8908 1.2319 22 14 5.4145 -10.7835 -0.5783 23 1 6.1204 -11.8403 0.1898 24 1 4.0014 -11.1869 -0.7916 25 1 6.0803 -10.5988 -1.8928 26 6 7.8349 -5.3140 1.9355 27 6 8.9923 -4.3358 1.7243 28 6 5.9828 0.5447 -0.4276 29 6 4.8148 1.4382 0.0041 30 1 -0.3634 -0.0051 1.0276 31 1 -0.3634 0.8925 -0.5093 32 1 -0.3633 -0.8874 -0.5183 33 1 1.9763 2.1222 0.0006 34 1 4.9221 -2.0060 -1.0021 35 1 4.6329 -2.4090 0.7105 36 1 6.7914 -3.0387 1.3853 37 1 9.5140 -2.7424 0.3716 38 1 8.3020 -3.6653 -1.5850 39 1 9.4356 -4.8620 -0.9131 40 1 7.2379 -5.8978 -1.4084 41 1 6.4424 -4.7243 -0.3324 42 1 8.5813 -6.7364 0.5001 43 1 5.8491 -6.9031 1.5168 44 1 3.7745 -9.5108 1.3650 45 1 8.0511 -5.9527 2.7920 46 1 6.9169 -4.7562 2.1204 47 1 9.9101 -4.8940 1.5393 48 1 9.1146 -3.7198 2.6152 49 1 5.8800 0.2977 -1.4842 50 1 6.9227 1.0730 -0.2678 51 1 4.7127 2.2688 -0.6943 52 1 5.0000 1.8223 1.0072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026515153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:48 Heat of formation + Delta-G solvation = -8.367813 kcal Electronic energy + Delta-G solvation = -31183.560921 eV Core-core repulsion = 27182.069947 eV Total energy + Delta-G solvation = -4001.490974 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.33693 -41.35297 -39.45274 -37.32425 -36.24473 -34.64136 -34.05102 -32.49168 -32.31297 -31.67616 -30.03856 -29.16256 -28.06782 -25.67982 -25.10735 -24.15024 -23.45545 -22.38903 -21.82660 -21.14727 -20.14994 -20.11127 -19.06379 -18.27045 -17.81483 -16.95925 -16.93595 -16.61025 -16.40164 -15.98226 -15.44023 -15.31354 -15.22369 -15.10670 -14.97959 -14.71650 -14.61566 -14.42391 -13.87927 -13.83190 -13.60713 -13.47248 -13.15447 -13.07344 -13.06066 -12.85504 -12.83188 -12.74509 -12.61006 -12.25922 -12.15846 -12.13405 -12.00874 -11.99009 -11.67785 -11.29063 -11.08532 -10.92621 -10.82581 -10.78885 -10.47704 -9.97943 -9.13478 -8.95877 -7.92337 -5.19273 1.07052 1.46356 1.47510 1.55606 1.56915 1.85710 2.07723 2.19611 2.57007 3.16651 3.40908 3.48879 3.51205 3.58713 3.76616 3.88708 3.92761 4.00727 4.06584 4.13534 4.25406 4.33604 4.34610 4.36253 4.41508 4.46315 4.50956 4.61792 4.63285 4.67889 4.70542 4.73634 4.85701 4.86314 4.89807 5.02062 5.04693 5.07801 5.12961 5.16665 5.18958 5.28645 5.33057 5.37142 5.49997 5.58722 5.61796 5.68178 5.88387 6.24584 6.30918 6.55155 7.18011 7.22392 7.36778 8.15715 8.37105 9.30951 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009351 B = 0.003001 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.772587 B = 9327.319885 C =11712.247361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.042 4.042 3 C -0.041 4.041 4 N -0.453 5.453 5 C 0.194 3.806 6 N -0.532 5.532 7 C -0.020 4.020 8 C -0.100 4.100 9 H 0.127 0.873 10 C 0.525 3.475 11 O -0.571 6.571 12 N -0.711 5.711 13 C 0.153 3.847 14 C -0.119 4.119 15 C -0.120 4.120 16 C 0.173 3.827 17 N -0.737 5.737 18 C -0.234 4.234 19 H 0.071 0.929 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.965 3.035 23 H -0.286 1.286 24 H -0.298 1.298 25 H -0.273 1.273 26 C -0.116 4.116 27 C -0.110 4.110 28 C -0.110 4.110 29 C 0.104 3.896 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.212 0.788 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.407 0.593 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.028 0.972 41 H 0.047 0.953 42 H 0.039 0.961 43 H 0.372 0.628 44 H 0.249 0.751 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.064 0.936 50 H 0.112 0.888 51 H 0.118 0.882 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.602 27.371 1.397 27.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.171 4.171 3 C -0.174 4.174 4 N -0.136 5.136 5 C -0.069 4.069 6 N -0.253 5.253 7 C -0.059 4.059 8 C -0.122 4.122 9 H 0.145 0.855 10 C 0.311 3.689 11 O -0.450 6.450 12 N -0.362 5.362 13 C 0.048 3.952 14 C -0.158 4.158 15 C -0.160 4.160 16 C 0.065 3.935 17 N -0.376 5.376 18 C -0.367 4.367 19 H 0.089 0.911 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.795 3.205 23 H -0.213 1.213 24 H -0.225 1.225 25 H -0.198 1.198 26 C -0.155 4.155 27 C -0.148 4.148 28 C -0.148 4.148 29 C -0.017 4.017 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.229 0.771 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.244 0.756 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.204 0.796 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.107 0.893 48 H 0.109 0.891 49 H 0.083 0.917 50 H 0.130 0.870 51 H 0.136 0.864 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.131 26.829 0.737 27.155 hybrid contribution -0.894 -0.915 -0.272 1.308 sum 3.237 25.913 0.465 26.119 Atomic orbital electron populations 1.20047 0.86454 1.02975 1.02538 1.21385 0.97828 0.88576 1.09274 1.22840 0.82321 1.01321 1.10943 1.45607 1.07715 1.06750 1.53492 1.23131 0.94325 0.82836 1.06567 1.69926 1.01278 1.32600 1.21470 1.20039 0.86614 0.95614 1.03678 1.21396 0.90875 0.95809 1.04130 0.85518 1.20544 0.87775 0.81084 0.79469 1.90683 1.47594 1.69731 1.37035 1.46179 1.22439 1.21139 1.46449 1.20933 0.86866 0.92643 0.94732 1.21839 0.99032 0.97178 0.97777 1.22001 0.97951 0.97052 0.99029 1.20467 0.89984 0.89405 0.93677 1.42633 1.26303 1.19142 1.49546 1.19569 1.04998 0.95703 1.16392 0.91119 1.25469 0.97630 1.02248 1.01460 1.69799 1.13510 1.38147 1.40441 0.85251 0.76236 0.80415 0.78573 1.21346 1.22461 1.19792 1.21701 0.98975 0.97490 0.97287 1.21740 0.98668 0.96771 0.97616 1.21687 0.99264 0.94114 0.99775 1.22316 0.79839 0.94014 1.05485 0.91054 0.88895 0.92894 0.77123 0.90389 0.88496 0.75561 0.89095 0.93198 0.90418 0.95289 0.93454 0.94298 0.79613 0.94204 0.92030 0.92084 0.89324 0.89073 0.91704 0.86958 0.86360 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.42 71.23 0.74 -0.42 16 2 C -0.04 -1.04 7.10 41.40 0.29 -0.74 16 3 C -0.04 -0.72 11.55 83.22 0.96 0.24 16 4 N -0.45 -8.25 3.13 -513.81 -1.61 -9.86 16 5 C 0.19 4.92 7.65 138.23 1.06 5.98 16 6 N -0.53 -16.64 11.24 -175.69 -1.98 -18.61 16 7 C -0.02 -0.45 5.47 30.09 0.16 -0.28 16 8 C -0.10 -1.65 2.55 -11.35 -0.03 -1.68 16 9 H 0.13 1.53 8.12 -2.39 -0.02 1.51 16 10 C 0.52 11.27 7.10 87.66 0.62 11.89 16 11 O -0.57 -15.75 15.49 -3.04 -0.05 -15.80 16 12 N -0.71 -14.69 4.14 -442.52 -1.83 -16.52 16 13 C 0.15 3.35 2.78 44.99 0.13 3.47 16 14 C -0.12 -3.23 5.60 30.60 0.17 -3.05 16 15 C -0.12 -4.17 5.34 30.60 0.16 -4.00 16 16 C 0.17 6.41 2.77 44.99 0.12 6.54 16 17 N -0.74 -36.45 5.12 -322.94 -1.65 -38.11 16 18 C -0.23 -13.07 9.93 84.03 0.83 -12.23 16 19 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 20 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 21 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 22 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 26 C -0.12 -3.23 5.22 30.60 0.16 -3.07 16 27 C -0.11 -2.19 5.61 30.60 0.17 -2.02 16 28 C -0.11 -1.50 4.67 30.73 0.14 -1.36 16 29 C 0.10 1.01 6.98 86.47 0.60 1.62 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.21 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.08 1.98 8.11 -2.38 -0.02 1.96 16 35 H 0.10 2.22 7.95 -2.39 -0.02 2.21 16 36 H 0.41 7.81 6.59 -92.71 -0.61 7.20 16 37 H 0.09 1.97 7.58 -2.39 -0.02 1.95 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.05 1.69 7.60 -2.39 -0.02 1.67 16 42 H 0.04 1.50 8.08 -2.38 -0.02 1.48 16 43 H 0.37 19.75 7.80 -92.71 -0.72 19.03 16 44 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.06 1.63 6.51 -2.39 -0.02 1.62 16 47 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 50 H 0.11 1.32 7.79 -2.39 -0.02 1.30 16 51 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 52 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -77.90 407.30 1.56 -76.34 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.41 Total: 36.10 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 6.78 Total: -3.07 kcal Atomic # 7 Polarization: -135.84 SS G_CDS: -6.79 Total: -142.62 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.05 Total: -15.80 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -77.90 1.56 -76.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026515153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.971 kcal (2) G-P(sol) polarization free energy of solvation -77.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds