Wall clock time and date at job start Wed Apr 1 2020 04:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34851 * 125.96108 * 2 1 4 4 N 1.36307 * 106.68560 * 180.02562 * 3 2 1 5 5 C 1.35418 * 107.40221 * 0.05107 * 4 3 2 6 6 N 1.30083 * 108.62652 * 359.93664 * 5 4 3 7 7 C 1.51072 * 123.99647 * 179.83962 * 5 4 3 8 8 C 1.53399 * 108.20064 * 344.15154 * 7 5 4 9 9 H 1.09003 * 109.51007 * 288.79833 * 8 7 5 10 10 C 1.50695 * 109.50770 * 168.70011 * 8 7 5 11 11 O 1.21278 * 120.00128 * 254.26392 * 10 8 7 12 12 N 1.34781 * 119.99764 * 74.26606 * 10 8 7 13 13 C 1.46927 * 120.63222 * 354.40271 * 12 10 8 14 14 C 1.53187 * 108.77346 * 126.41654 * 13 12 10 15 15 C 1.53037 * 109.31333 * 54.63689 * 14 13 12 16 16 C 1.53039 * 109.53921 * 298.63039 * 15 14 13 17 17 H 1.09000 * 109.49896 * 301.38830 * 16 15 14 18 18 N 1.46503 * 109.49935 * 181.31699 * 16 15 14 19 19 C 1.46500 * 120.00087 * 300.00428 * 18 16 15 20 20 C 1.36940 * 119.99675 * 119.99922 * 18 16 15 21 21 H 1.07997 * 120.00356 * 333.68007 * 20 18 16 22 22 C 1.38813 * 119.99436 * 153.94838 * 20 18 16 23 23 N 1.31613 * 120.00253 * 348.69694 * 22 20 18 24 24 Si 1.86799 * 119.99689 * 168.69139 * 22 20 18 25 25 H 1.48500 * 109.47131 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47136 * 119.99911 * 24 22 20 27 27 H 1.48500 * 109.47289 * 240.00164 * 24 22 20 28 28 C 1.46930 * 120.63083 * 174.42980 * 12 10 8 29 29 C 1.53145 * 109.27746 * 48.75087 * 8 7 5 30 30 C 1.46479 * 127.77466 * 180.08993 * 4 3 2 31 31 H 1.09003 * 109.47545 * 89.99683 * 1 2 3 32 32 H 1.09004 * 109.46930 * 209.99810 * 1 2 3 33 33 H 1.08996 * 109.47101 * 329.99126 * 1 2 3 34 34 H 1.07998 * 126.65827 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.75481 * 224.45322 * 7 5 4 36 36 H 1.09000 * 109.68099 * 103.80734 * 7 5 4 37 37 H 1.08994 * 109.58615 * 6.62864 * 13 12 10 38 38 H 1.09003 * 109.70097 * 246.27102 * 13 12 10 39 39 H 1.08998 * 109.49786 * 294.68114 * 14 13 12 40 40 H 1.09005 * 109.52153 * 174.59984 * 14 13 12 41 41 H 1.09006 * 109.45638 * 178.60965 * 15 14 13 42 42 H 1.08998 * 109.46341 * 58.65708 * 15 14 13 43 43 H 1.09000 * 109.46466 * 272.20632 * 19 18 16 44 44 H 1.08997 * 109.46710 * 32.20471 * 19 18 16 45 45 H 1.08998 * 109.47171 * 152.20617 * 19 18 16 46 46 H 0.96998 * 119.99910 * 180.02562 * 23 22 20 47 47 H 1.08992 * 109.58873 * 113.79412 * 28 12 10 48 48 H 1.09003 * 109.58433 * 353.36833 * 28 12 10 49 49 H 1.08998 * 109.46803 * 50.54134 * 29 8 7 50 50 H 1.09000 * 109.46880 * 170.53105 * 29 8 7 51 51 H 1.08999 * 109.58685 * 43.04883 * 30 4 3 52 52 H 1.09006 * 109.69779 * 282.70092 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5856 0.6415 -0.0006 5 6 3.5413 -0.7119 -0.0021 6 7 2.2957 -1.0869 -0.0010 7 6 4.7655 -1.5971 -0.0066 8 6 5.9741 -0.7414 -0.4070 9 1 5.9059 -0.4875 -1.4649 10 6 7.2432 -1.5140 -0.1556 11 8 7.9507 -1.2279 0.7870 12 7 7.5920 -2.5231 -0.9782 13 6 6.6879 -2.9618 -2.0501 14 6 7.4508 -2.9403 -3.3783 15 6 8.7224 -3.7813 -3.2452 16 6 9.6218 -3.1814 -2.1619 17 1 9.8691 -2.1525 -2.4230 18 7 10.8528 -3.9688 -2.0570 19 6 10.7854 -5.3912 -1.7129 20 6 12.0664 -3.3751 -2.2808 21 1 12.1333 -2.5071 -2.9198 22 6 13.2113 -3.8925 -1.6905 23 7 13.1108 -4.8057 -0.7481 24 14 14.8948 -3.2926 -2.2340 25 1 14.7359 -2.2711 -3.3001 26 1 15.6040 -2.6922 -1.0757 27 1 15.6828 -4.4371 -2.7579 28 6 8.8835 -3.2057 -0.8199 29 6 5.9832 0.5426 0.4275 30 6 4.8148 1.4382 0.0010 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.9763 2.1222 -0.0004 35 1 4.6330 -2.4055 -0.7257 36 1 4.9223 -2.0119 0.9891 37 1 5.8347 -2.2860 -2.1078 38 1 6.3391 -3.9740 -1.8453 39 1 7.7181 -1.9135 -3.6277 40 1 6.8218 -3.3542 -4.1664 41 1 9.2546 -3.7879 -4.1965 42 1 8.4558 -4.8021 -2.9715 43 1 10.7966 -5.5035 -0.6288 44 1 9.8661 -5.8186 -2.1131 45 1 11.6435 -5.9096 -2.1408 46 1 13.9108 -5.1669 -0.3355 47 1 8.7159 -4.2382 -0.5136 48 1 9.4789 -2.6907 -0.0659 49 1 5.8811 0.2906 1.4831 50 1 6.9229 1.0719 0.2697 51 1 4.7131 2.2655 0.7034 52 1 5.0005 1.8292 -0.9995 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027463213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:33 Heat of formation + Delta-G solvation = 44.647725 kcal Electronic energy + Delta-G solvation = -31426.839782 eV Core-core repulsion = 27427.647735 eV Total energy + Delta-G solvation = -3999.192047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.59962 -40.25946 -37.77674 -36.41484 -35.16031 -33.64264 -32.29240 -31.78064 -31.29468 -29.47114 -28.65354 -27.48088 -26.01555 -25.35923 -24.17768 -23.76893 -22.64386 -21.68475 -20.65667 -19.65741 -19.17534 -18.60769 -17.33515 -16.99845 -16.75131 -16.20483 -15.51317 -15.47423 -14.95724 -14.48304 -14.41374 -14.28333 -14.08517 -13.93696 -13.85899 -13.60126 -13.43976 -13.23552 -12.82194 -12.67406 -12.57558 -12.49085 -12.27765 -12.13857 -11.91396 -11.82886 -11.52535 -11.42049 -11.13742 -11.04427 -10.84486 -10.64001 -10.41474 -10.37023 -10.18680 -10.12380 -9.92832 -9.76516 -9.71980 -9.56691 -8.59646 -8.39853 -8.35658 -6.73723 -5.77025 -3.24573 1.80922 2.51729 2.66010 2.87366 3.07712 3.36445 3.43505 3.45412 3.93142 4.14869 4.24995 4.27327 4.46500 4.66924 4.71303 4.79238 4.81920 4.90762 5.01345 5.05577 5.08585 5.12885 5.26714 5.33297 5.40755 5.44925 5.48852 5.49967 5.54245 5.60489 5.66788 5.74370 5.79096 5.81664 5.89131 5.97880 6.09716 6.11252 6.21285 6.35765 6.47475 6.58349 6.64881 6.76574 6.91274 6.94070 6.96012 7.34246 7.60517 7.67031 7.79040 7.92397 8.29325 8.40251 9.20789 9.82654 10.33097 11.29000 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.002322 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.527101 B =12055.023705 C =12565.351932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.006 4.006 3 C -0.056 4.056 4 N -0.455 5.455 5 C 0.215 3.785 6 N -0.485 5.485 7 C -0.025 4.025 8 C -0.112 4.112 9 H 0.101 0.899 10 C 0.518 3.482 11 O -0.536 6.536 12 N -0.602 5.602 13 C 0.102 3.898 14 C -0.131 4.131 15 C -0.134 4.134 16 C 0.169 3.831 17 H 0.064 0.936 18 N -0.590 5.590 19 C 0.160 3.840 20 C -0.257 4.257 21 H 0.067 0.933 22 C 0.005 3.995 23 N -0.903 5.903 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.099 3.901 29 C -0.116 4.116 30 C 0.104 3.896 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.173 0.827 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.021 0.979 44 H -0.002 1.002 45 H 0.051 0.949 46 H 0.253 0.747 47 H 0.062 0.938 48 H 0.091 0.909 49 H 0.085 0.915 50 H 0.100 0.900 51 H 0.094 0.906 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.558 10.689 -1.712 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.135 4.135 3 C -0.189 4.189 4 N -0.138 5.138 5 C -0.047 4.047 6 N -0.204 5.204 7 C -0.065 4.065 8 C -0.134 4.134 9 H 0.119 0.881 10 C 0.305 3.695 11 O -0.413 6.413 12 N -0.335 5.335 13 C -0.021 4.021 14 C -0.170 4.170 15 C -0.173 4.173 16 C 0.059 3.941 17 H 0.082 0.918 18 N -0.312 5.312 19 C 0.016 3.984 20 C -0.387 4.387 21 H 0.085 0.915 22 C -0.194 4.194 23 N -0.548 5.548 24 Si 0.735 3.265 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.216 1.216 28 C -0.025 4.025 29 C -0.154 4.154 30 C -0.018 4.018 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.190 0.810 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.039 0.961 44 H 0.016 0.984 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.109 0.891 49 H 0.104 0.896 50 H 0.118 0.882 51 H 0.112 0.888 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.137 10.029 -1.114 24.328 hybrid contribution 1.239 1.143 -0.246 1.704 sum -20.898 11.172 -1.360 23.736 Atomic orbital electron populations 1.19993 0.87724 1.02485 1.02033 1.20798 0.96452 0.88317 1.07947 1.22289 0.82862 1.00356 1.13344 1.45384 1.06600 1.07445 1.54333 1.23073 0.94601 0.81569 1.05475 1.69945 0.99608 1.30416 1.20473 1.20225 0.85974 0.95518 1.04740 1.21432 0.93651 0.96004 1.02301 0.88105 1.20161 0.86536 0.80362 0.82467 1.90726 1.53810 1.67385 1.29355 1.48299 1.19616 1.34210 1.31412 1.21881 0.92315 1.00505 0.87408 1.21907 0.97766 1.01260 0.96071 1.22078 0.95114 0.99217 1.00922 1.20648 0.86775 0.95551 0.91109 0.91812 1.43911 1.00723 1.05123 1.81411 1.20768 0.96191 0.83521 0.97944 1.19221 0.83929 1.12587 1.22946 0.91530 1.25117 0.98536 0.99335 0.96419 1.70053 1.27604 1.31289 1.25821 0.86181 0.84339 0.78072 0.77917 1.20297 1.21645 1.21590 1.22564 0.81837 0.96587 1.01487 1.21730 0.97942 0.94415 1.01265 1.22067 0.81928 0.94397 1.03447 0.91576 0.91270 0.91537 0.80992 0.87858 0.88583 0.90193 0.91086 0.91805 0.91184 0.91709 0.92168 0.96066 0.98354 0.93004 0.93676 0.91977 0.89061 0.89641 0.88196 0.88763 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.42 36.01 0.38 -0.13 16 2 C -0.01 -0.07 7.10 -82.72 -0.59 -0.65 16 3 C -0.06 -0.52 11.55 -16.76 -0.19 -0.71 16 4 N -0.45 -4.41 3.13 -113.74 -0.36 -4.77 16 5 C 0.22 2.49 7.65 -155.24 -1.19 1.31 16 6 N -0.48 -6.41 11.24 -6.87 -0.08 -6.48 16 7 C -0.03 -0.26 5.27 -27.49 -0.14 -0.41 16 8 C -0.11 -1.14 1.68 -91.49 -0.15 -1.30 16 9 H 0.10 0.89 7.16 -51.93 -0.37 0.52 16 10 C 0.52 7.54 6.90 -10.99 -0.08 7.47 16 11 O -0.54 -10.04 15.49 5.56 0.09 -9.95 16 12 N -0.60 -8.80 2.97 -172.77 -0.51 -9.32 16 13 C 0.10 1.13 5.55 -3.71 -0.02 1.11 16 14 C -0.13 -1.54 6.08 -26.62 -0.16 -1.70 16 15 C -0.13 -2.11 5.11 -26.69 -0.14 -2.25 16 16 C 0.17 3.32 2.75 -67.81 -0.19 3.13 16 17 H 0.06 1.33 7.89 -51.93 -0.41 0.92 16 18 N -0.59 -14.36 2.81 -173.35 -0.49 -14.85 16 19 C 0.16 3.83 7.96 59.85 0.48 4.31 16 20 C -0.26 -6.97 9.54 -15.06 -0.14 -7.11 16 21 H 0.07 1.78 7.84 -52.49 -0.41 1.37 16 22 C 0.00 0.14 5.08 -17.43 -0.09 0.05 16 23 N -0.90 -26.21 10.85 55.49 0.60 -25.61 16 24 Si 0.90 21.77 29.57 -169.99 -5.03 16.75 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 28 C 0.10 1.85 5.77 -3.71 -0.02 1.83 16 29 C -0.12 -1.06 4.59 -26.52 -0.12 -1.18 16 30 C 0.10 0.73 6.98 -3.91 -0.03 0.71 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.10 0.97 6.17 -51.93 -0.32 0.65 16 36 H 0.10 1.06 8.11 -51.93 -0.42 0.64 16 37 H 0.08 0.70 4.52 -51.93 -0.23 0.47 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.96 6.73 -51.93 -0.35 0.61 16 43 H 0.02 0.55 7.70 -51.93 -0.40 0.15 16 44 H 0.00 -0.04 6.46 -51.93 -0.34 -0.38 16 45 H 0.05 1.35 7.01 -51.93 -0.36 0.98 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.06 1.19 7.51 -51.93 -0.39 0.80 16 48 H 0.09 2.04 7.04 -51.93 -0.37 1.68 16 49 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 50 H 0.10 0.92 8.02 -51.93 -0.42 0.51 16 51 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 397.30 15.07 5.99 5.99 Total: -1.00 -33.73 397.30 -10.76 -44.49 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -8.57 Total: -0.72 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -2.40 Total: 4.47 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.83 Total: -61.02 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.73 -10.76 -44.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027463213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.136 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds