Wall clock time and date at job start Wed Apr 1 2020 04:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34851 * 125.96108 * 2 1 4 4 N 1.36307 * 106.68560 * 180.02562 * 3 2 1 5 5 C 1.35418 * 107.40221 * 0.05107 * 4 3 2 6 6 N 1.30083 * 108.62652 * 359.93664 * 5 4 3 7 7 C 1.51072 * 123.99647 * 179.83962 * 5 4 3 8 8 C 1.53399 * 108.20064 * 344.15154 * 7 5 4 9 9 H 1.09003 * 109.51007 * 288.79833 * 8 7 5 10 10 C 1.50695 * 109.50770 * 168.70011 * 8 7 5 11 11 O 1.21278 * 120.00128 * 254.26392 * 10 8 7 12 12 N 1.34781 * 119.99764 * 74.26606 * 10 8 7 13 13 C 1.46927 * 120.63222 * 354.40271 * 12 10 8 14 14 C 1.53187 * 108.77346 * 126.41654 * 13 12 10 15 15 C 1.53037 * 109.31333 * 54.63689 * 14 13 12 16 16 C 1.53039 * 109.53921 * 298.63039 * 15 14 13 17 17 H 1.09000 * 109.49896 * 301.38830 * 16 15 14 18 18 N 1.46503 * 109.49935 * 181.31699 * 16 15 14 19 19 C 1.46500 * 120.00087 * 300.00428 * 18 16 15 20 20 C 1.36940 * 119.99675 * 119.99922 * 18 16 15 21 21 H 1.07997 * 120.00356 * 333.68007 * 20 18 16 22 22 C 1.38813 * 119.99436 * 153.94838 * 20 18 16 23 23 N 1.31613 * 120.00253 * 348.69694 * 22 20 18 24 24 Si 1.86799 * 119.99689 * 168.69139 * 22 20 18 25 25 H 1.48500 * 109.47131 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47136 * 119.99911 * 24 22 20 27 27 H 1.48500 * 109.47289 * 240.00164 * 24 22 20 28 28 C 1.46930 * 120.63083 * 174.42980 * 12 10 8 29 29 C 1.53145 * 109.27746 * 48.75087 * 8 7 5 30 30 C 1.46479 * 127.77466 * 180.08993 * 4 3 2 31 31 H 1.09003 * 109.47545 * 89.99683 * 1 2 3 32 32 H 1.09004 * 109.46930 * 209.99810 * 1 2 3 33 33 H 1.08996 * 109.47101 * 329.99126 * 1 2 3 34 34 H 1.07998 * 126.65827 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.75481 * 224.45322 * 7 5 4 36 36 H 1.09000 * 109.68099 * 103.80734 * 7 5 4 37 37 H 1.08994 * 109.58615 * 6.62864 * 13 12 10 38 38 H 1.09003 * 109.70097 * 246.27102 * 13 12 10 39 39 H 1.08998 * 109.49786 * 294.68114 * 14 13 12 40 40 H 1.09005 * 109.52153 * 174.59984 * 14 13 12 41 41 H 1.09006 * 109.45638 * 178.60965 * 15 14 13 42 42 H 1.08998 * 109.46341 * 58.65708 * 15 14 13 43 43 H 1.09000 * 109.46466 * 272.20632 * 19 18 16 44 44 H 1.08997 * 109.46710 * 32.20471 * 19 18 16 45 45 H 1.08998 * 109.47171 * 152.20617 * 19 18 16 46 46 H 0.96998 * 119.99910 * 180.02562 * 23 22 20 47 47 H 1.08992 * 109.58873 * 113.79412 * 28 12 10 48 48 H 1.09003 * 109.58433 * 353.36833 * 28 12 10 49 49 H 1.08998 * 109.46803 * 50.54134 * 29 8 7 50 50 H 1.09000 * 109.46880 * 170.53105 * 29 8 7 51 51 H 1.08999 * 109.58685 * 43.04883 * 30 4 3 52 52 H 1.09006 * 109.69779 * 282.70092 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5856 0.6415 -0.0006 5 6 3.5413 -0.7119 -0.0021 6 7 2.2957 -1.0869 -0.0010 7 6 4.7655 -1.5971 -0.0066 8 6 5.9741 -0.7414 -0.4070 9 1 5.9059 -0.4875 -1.4649 10 6 7.2432 -1.5140 -0.1556 11 8 7.9507 -1.2279 0.7870 12 7 7.5920 -2.5231 -0.9782 13 6 6.6879 -2.9618 -2.0501 14 6 7.4508 -2.9403 -3.3783 15 6 8.7224 -3.7813 -3.2452 16 6 9.6218 -3.1814 -2.1619 17 1 9.8691 -2.1525 -2.4230 18 7 10.8528 -3.9688 -2.0570 19 6 10.7854 -5.3912 -1.7129 20 6 12.0664 -3.3751 -2.2808 21 1 12.1333 -2.5071 -2.9198 22 6 13.2113 -3.8925 -1.6905 23 7 13.1108 -4.8057 -0.7481 24 14 14.8948 -3.2926 -2.2340 25 1 14.7359 -2.2711 -3.3001 26 1 15.6040 -2.6922 -1.0757 27 1 15.6828 -4.4371 -2.7579 28 6 8.8835 -3.2057 -0.8199 29 6 5.9832 0.5426 0.4275 30 6 4.8148 1.4382 0.0010 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.9763 2.1222 -0.0004 35 1 4.6330 -2.4055 -0.7257 36 1 4.9223 -2.0119 0.9891 37 1 5.8347 -2.2860 -2.1078 38 1 6.3391 -3.9740 -1.8453 39 1 7.7181 -1.9135 -3.6277 40 1 6.8218 -3.3542 -4.1664 41 1 9.2546 -3.7879 -4.1965 42 1 8.4558 -4.8021 -2.9715 43 1 10.7966 -5.5035 -0.6288 44 1 9.8661 -5.8186 -2.1131 45 1 11.6435 -5.9096 -2.1408 46 1 13.9108 -5.1669 -0.3355 47 1 8.7159 -4.2382 -0.5136 48 1 9.4789 -2.6907 -0.0659 49 1 5.8811 0.2906 1.4831 50 1 6.9229 1.0719 0.2697 51 1 4.7131 2.2655 0.7034 52 1 5.0005 1.8292 -0.9995 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027463213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:32 Heat of formation + Delta-G solvation = 24.841046 kcal Electronic energy + Delta-G solvation = -31427.698664 eV Core-core repulsion = 27427.647735 eV Total energy + Delta-G solvation = -4000.050929 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.34012 -41.44431 -39.12698 -37.33144 -36.80806 -34.57904 -33.76070 -32.83225 -32.44556 -30.73135 -29.77153 -28.28203 -28.04172 -26.46624 -25.37535 -24.90798 -23.65589 -23.04742 -21.48768 -20.86428 -20.07054 -19.84240 -18.78621 -18.32445 -17.74309 -17.19135 -16.95740 -16.53873 -16.37852 -15.76669 -15.45894 -15.37195 -15.19210 -15.01115 -14.87652 -14.72843 -14.61086 -14.40789 -13.99276 -13.82935 -13.76195 -13.61994 -13.36163 -13.12744 -12.94226 -12.85041 -12.82799 -12.62094 -12.49986 -12.31029 -12.23637 -12.17851 -12.09830 -12.03136 -11.72693 -11.62178 -11.37622 -10.92578 -10.80115 -10.65247 -10.45413 -9.70306 -9.10734 -8.73214 -7.87374 -5.37213 1.09775 1.43252 1.44535 1.50403 1.55075 1.85102 1.91574 2.09914 2.48615 3.07680 3.28146 3.40174 3.47087 3.54078 3.61641 3.85045 3.97099 4.04803 4.06614 4.09018 4.14429 4.23072 4.27234 4.36513 4.38915 4.47341 4.49878 4.57008 4.61537 4.69692 4.75050 4.79932 4.82139 4.92550 4.94976 4.96036 5.03674 5.06054 5.06572 5.17191 5.19870 5.24484 5.40477 5.42356 5.47909 5.56739 5.61877 5.67710 5.91090 6.24154 6.32849 6.42896 7.10393 7.13600 7.17430 7.83992 8.28530 9.16894 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.002322 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.527101 B =12055.023705 C =12565.351932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.037 4.037 3 C -0.044 4.044 4 N -0.454 5.454 5 C 0.197 3.803 6 N -0.521 5.521 7 C -0.019 4.019 8 C -0.096 4.096 9 H 0.127 0.873 10 C 0.515 3.485 11 O -0.585 6.585 12 N -0.602 5.602 13 C 0.098 3.902 14 C -0.122 4.122 15 C -0.124 4.124 16 C 0.167 3.833 17 H 0.048 0.952 18 N -0.608 5.608 19 C 0.178 3.822 20 C -0.263 4.263 21 H 0.067 0.933 22 C -0.052 4.052 23 N -0.937 5.937 24 Si 0.969 3.031 25 H -0.265 1.265 26 H -0.295 1.295 27 H -0.288 1.288 28 C 0.116 3.884 29 C -0.114 4.114 30 C 0.108 3.892 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.207 0.793 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.057 0.943 42 H 0.061 0.939 43 H -0.008 1.008 44 H 0.034 0.966 45 H 0.023 0.977 46 H 0.249 0.751 47 H 0.055 0.945 48 H 0.044 0.956 49 H 0.066 0.934 50 H 0.098 0.902 51 H 0.117 0.883 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.180 12.761 -3.832 28.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.166 4.166 3 C -0.178 4.178 4 N -0.137 5.137 5 C -0.066 4.066 6 N -0.242 5.242 7 C -0.058 4.058 8 C -0.117 4.117 9 H 0.145 0.855 10 C 0.304 3.696 11 O -0.466 6.466 12 N -0.334 5.334 13 C -0.023 4.023 14 C -0.161 4.161 15 C -0.163 4.163 16 C 0.059 3.941 17 H 0.066 0.934 18 N -0.330 5.330 19 C 0.033 3.967 20 C -0.394 4.394 21 H 0.085 0.915 22 C -0.248 4.248 23 N -0.583 5.583 24 Si 0.797 3.203 25 H -0.189 1.189 26 H -0.222 1.222 27 H -0.215 1.215 28 C -0.010 4.010 29 C -0.152 4.152 30 C -0.013 4.013 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.224 0.776 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.124 0.876 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.010 0.990 44 H 0.052 0.948 45 H 0.042 0.958 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.085 0.915 50 H 0.116 0.884 51 H 0.135 0.865 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.813 12.121 -3.276 27.809 hybrid contribution 1.977 0.537 0.447 2.096 sum -22.836 12.658 -2.829 26.263 Atomic orbital electron populations 1.20044 0.86176 1.03032 1.02648 1.21364 0.97814 0.88437 1.08955 1.22839 0.82251 1.01495 1.11195 1.45566 1.07554 1.07039 1.53526 1.23078 0.94353 0.82559 1.06597 1.69885 1.00660 1.32124 1.21500 1.20136 0.85658 0.95691 1.04278 1.21368 0.90733 0.95632 1.03989 0.85480 1.20965 0.87412 0.79890 0.81364 1.90708 1.55741 1.68636 1.31472 1.48313 1.18496 1.33969 1.32581 1.22205 0.92265 1.02155 0.85686 1.21886 0.95994 1.00817 0.97356 1.21919 0.96121 0.99773 0.98469 1.20801 0.85978 0.94505 0.92776 0.93377 1.44140 1.01631 1.05671 1.81589 1.20476 0.96565 0.83637 0.96004 1.19532 0.85342 1.12220 1.22285 0.91504 1.25890 1.02023 1.00012 0.96852 1.70216 1.28037 1.32813 1.27232 0.85179 0.79981 0.77692 0.77450 1.18919 1.22180 1.21479 1.21960 0.83628 0.95871 0.99502 1.21691 0.99135 0.94339 1.00082 1.22217 0.79791 0.93802 1.05463 0.90878 0.92385 0.89336 0.77584 0.86737 0.90130 0.86896 0.89761 0.91422 0.87567 0.92423 0.91998 0.98976 0.94803 0.95768 0.94221 0.92692 0.93703 0.91522 0.88358 0.86514 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 10.42 71.24 0.74 -0.09 16 2 C -0.04 -0.74 7.10 41.41 0.29 -0.44 16 3 C -0.04 -0.67 11.55 83.22 0.96 0.29 16 4 N -0.45 -7.42 3.13 -513.76 -1.61 -9.04 16 5 C 0.20 4.17 7.65 138.25 1.06 5.23 16 6 N -0.52 -13.05 11.24 -175.66 -1.98 -15.02 16 7 C -0.02 -0.35 5.27 30.10 0.16 -0.19 16 8 C -0.10 -1.77 1.68 -11.36 -0.02 -1.79 16 9 H 0.13 1.73 7.16 -2.39 -0.02 1.72 16 10 C 0.51 14.87 6.90 87.65 0.61 15.48 16 11 O -0.59 -22.87 15.49 -3.02 -0.05 -22.91 16 12 N -0.60 -17.14 2.97 -818.92 -2.43 -19.58 16 13 C 0.10 1.85 5.55 86.36 0.48 2.33 16 14 C -0.12 -2.40 6.08 30.67 0.19 -2.22 16 15 C -0.12 -3.67 5.11 30.62 0.16 -3.51 16 16 C 0.17 6.65 2.75 45.07 0.12 6.77 16 17 H 0.05 2.04 7.89 -2.39 -0.02 2.02 16 18 N -0.61 -30.40 2.81 -702.35 -1.97 -32.37 16 19 C 0.18 8.77 7.96 127.77 1.02 9.79 16 20 C -0.26 -14.63 9.54 84.03 0.80 -13.83 16 21 H 0.07 3.63 7.84 -2.91 -0.02 3.61 16 22 C -0.05 -2.99 5.08 84.86 0.43 -2.56 16 23 N -0.94 -56.56 10.85 21.65 0.24 -56.32 16 24 Si 0.97 45.77 29.57 68.60 2.03 47.80 16 25 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 28 C 0.12 4.47 5.77 86.36 0.50 4.97 16 29 C -0.11 -1.91 4.59 30.73 0.14 -1.77 16 30 C 0.11 1.15 6.98 86.47 0.60 1.75 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.21 1.50 8.06 -2.91 -0.02 1.47 16 35 H 0.11 1.86 6.17 -2.39 -0.01 1.84 16 36 H 0.08 1.77 8.11 -2.39 -0.02 1.75 16 37 H 0.11 1.46 4.52 -2.39 -0.01 1.45 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.06 1.82 6.73 -2.39 -0.02 1.81 16 43 H -0.01 -0.44 7.70 -2.39 -0.02 -0.46 16 44 H 0.03 1.39 6.46 -2.39 -0.02 1.38 16 45 H 0.02 1.29 7.01 -2.39 -0.02 1.27 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.05 2.18 7.51 -2.39 -0.02 2.16 16 48 H 0.04 2.14 7.04 -2.39 -0.02 2.13 16 49 H 0.07 1.37 8.12 -2.39 -0.02 1.35 16 50 H 0.10 1.70 8.02 -2.39 -0.02 1.68 16 51 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -78.91 397.30 3.37 -75.54 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.91 Total: 11.70 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 8.24 Total: 20.20 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -7.76 Total: -132.32 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.05 Total: -22.91 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -78.91 3.37 -75.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027463213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.382 kcal (2) G-P(sol) polarization free energy of solvation -78.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds