Wall clock time and date at job start Wed Apr 1 2020 04:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34854 * 125.96528 * 2 1 4 4 N 1.36317 * 106.68913 * 179.90775 * 3 2 1 5 5 C 1.35418 * 107.40002 * 0.33774 * 4 3 2 6 6 N 1.30096 * 108.62796 * 359.81707 * 5 4 3 7 7 C 1.51042 * 123.98508 * 179.85626 * 5 4 3 8 8 C 1.53407 * 108.20593 * 15.94144 * 7 5 4 9 9 H 1.08994 * 109.55787 * 71.13118 * 8 7 5 10 10 C 1.50697 * 109.50409 * 191.25585 * 8 7 5 11 11 O 1.21283 * 120.00155 * 105.37918 * 10 8 7 12 12 N 1.34770 * 120.00055 * 285.37171 * 10 8 7 13 13 C 1.46931 * 120.63583 * 185.59117 * 12 10 8 14 14 C 1.53190 * 108.77677 * 126.36926 * 13 12 10 15 15 C 1.53033 * 109.31292 * 54.63878 * 14 13 12 16 16 C 1.53048 * 109.53873 * 298.63334 * 15 14 13 17 17 H 1.09002 * 109.49382 * 301.38281 * 16 15 14 18 18 N 1.46501 * 109.49863 * 181.31727 * 16 15 14 19 19 C 1.46497 * 119.99959 * 300.00092 * 18 16 15 20 20 C 1.36936 * 119.99919 * 119.99618 * 18 16 15 21 21 H 1.08000 * 119.99995 * 19.57025 * 20 18 16 22 22 C 1.38814 * 120.00131 * 199.56392 * 20 18 16 23 23 N 1.31618 * 120.00088 * 15.28653 * 22 20 18 24 24 Si 1.86793 * 120.00082 * 195.29124 * 22 20 18 25 25 H 1.48503 * 109.47420 * 59.99643 * 24 22 20 26 26 H 1.48505 * 109.47252 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47029 * 299.99822 * 24 22 20 28 28 C 1.46929 * 120.63276 * 5.31155 * 12 10 8 29 29 C 1.53151 * 109.23557 * 311.18035 * 8 7 5 30 30 C 1.46470 * 127.77382 * 180.02562 * 4 3 2 31 31 H 1.09008 * 109.46778 * 269.70816 * 1 2 3 32 32 H 1.08994 * 109.47507 * 149.71364 * 1 2 3 33 33 H 1.08998 * 109.47332 * 29.70301 * 1 2 3 34 34 H 1.08004 * 126.65241 * 0.03060 * 3 2 1 35 35 H 1.09000 * 109.71537 * 135.60010 * 7 5 4 36 36 H 1.08996 * 109.71446 * 256.24976 * 7 5 4 37 37 H 1.08995 * 109.58773 * 246.15895 * 13 12 10 38 38 H 1.09000 * 109.57930 * 6.44040 * 13 12 10 39 39 H 1.09001 * 109.49643 * 174.59381 * 14 13 12 40 40 H 1.09003 * 109.49621 * 294.65547 * 14 13 12 41 41 H 1.08997 * 109.46288 * 58.65548 * 15 14 13 42 42 H 1.09004 * 109.46236 * 178.61602 * 15 14 13 43 43 H 1.09008 * 109.47175 * 94.95046 * 19 18 16 44 44 H 1.09004 * 109.47235 * 214.95024 * 19 18 16 45 45 H 1.09001 * 109.47041 * 334.95098 * 19 18 16 46 46 H 0.96997 * 120.00346 * 179.97438 * 23 22 20 47 47 H 1.09004 * 109.58014 * 353.42044 * 28 12 10 48 48 H 1.08998 * 109.58884 * 113.84063 * 28 12 10 49 49 H 1.09001 * 109.46648 * 309.48440 * 29 8 7 50 50 H 1.09000 * 109.46851 * 189.50535 * 29 8 7 51 51 H 1.09005 * 109.58229 * 317.25029 * 30 4 3 52 52 H 1.09002 * 109.58786 * 77.66349 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5857 0.6415 0.0021 5 6 3.5414 -0.7120 -0.0043 6 7 2.2956 -1.0870 -0.0061 7 6 4.7655 -1.5968 -0.0075 8 6 5.9745 -0.7439 0.3976 9 1 5.9077 -0.4961 1.4569 10 6 7.2433 -1.5150 0.1400 11 8 7.9468 -1.2270 -0.8050 12 7 7.5964 -2.5248 0.9599 13 6 8.8879 -3.2058 0.7958 14 6 9.6318 -3.1816 2.1347 15 6 8.7377 -3.7833 3.2213 16 6 7.4655 -2.9438 3.3603 17 1 7.7328 -1.9170 3.6098 18 7 6.6248 -3.5022 4.4221 19 6 6.1312 -4.8776 4.3186 20 6 6.3004 -2.7385 5.5115 21 1 6.3800 -1.6627 5.4598 22 6 5.8691 -3.3471 6.6822 23 7 6.0524 -4.6385 6.8588 24 14 5.0285 -2.3334 8.0069 25 1 3.7989 -1.7138 7.4506 26 1 4.6677 -3.2121 9.1485 27 1 5.9512 -1.2682 8.4752 28 6 6.6997 -2.9616 2.0387 29 6 5.9825 0.5451 -0.4295 30 6 4.8148 1.4381 0.0035 31 1 -0.3633 -0.0052 1.0277 32 1 -0.3634 -0.8873 -0.5182 33 1 -0.3634 0.8926 -0.5092 34 1 1.9763 2.1222 0.0005 35 1 4.6335 -2.4097 0.7065 36 1 4.9213 -2.0052 -1.0060 37 1 8.7203 -4.2383 0.4894 38 1 9.4786 -2.6911 0.0379 39 1 10.5480 -3.7662 2.0525 40 1 9.8790 -2.1524 2.3950 41 1 8.4711 -4.8042 2.9481 42 1 9.2738 -3.7898 4.1703 43 1 6.8037 -5.5465 4.8559 44 1 5.1335 -4.9393 4.7533 45 1 6.0892 -5.1706 3.2695 46 1 5.7513 -5.0637 7.6769 47 1 5.8479 -2.2844 2.1025 48 1 6.3499 -3.9738 1.8359 49 1 5.8791 0.2992 -1.4863 50 1 6.9225 1.0733 -0.2698 51 1 4.7122 2.2693 -0.6942 52 1 5.0006 1.8215 1.0068 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027463214.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:36 Heat of formation + Delta-G solvation = 28.535449 kcal Electronic energy + Delta-G solvation = -32063.251589 eV Core-core repulsion = 28063.360861 eV Total energy + Delta-G solvation = -3999.890728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.35028 -41.47411 -39.14902 -37.41849 -36.61193 -34.66572 -33.74877 -33.00275 -32.44875 -30.44455 -29.88996 -28.31987 -28.03359 -26.47589 -25.29272 -24.94719 -24.06377 -22.60578 -21.50517 -20.99622 -20.11262 -19.83385 -18.75325 -18.32809 -17.75380 -17.19159 -16.97389 -16.52450 -16.39518 -15.73376 -15.55968 -15.41682 -15.14704 -15.05550 -14.86028 -14.69027 -14.68191 -14.43925 -14.00570 -13.81967 -13.71844 -13.51773 -13.44423 -13.14762 -12.90712 -12.83021 -12.76119 -12.63163 -12.49234 -12.32798 -12.24959 -12.21364 -12.12508 -11.91206 -11.79026 -11.61135 -11.43151 -10.94209 -10.83050 -10.60214 -10.47392 -9.73162 -9.12527 -8.77677 -7.81725 -5.26483 1.07718 1.44932 1.46742 1.48753 1.54112 1.84312 1.91594 2.08420 2.51121 3.05385 3.31825 3.36837 3.46652 3.54056 3.66427 3.85265 3.94167 4.02293 4.04772 4.10244 4.14384 4.22564 4.25889 4.33153 4.37915 4.44191 4.48191 4.53789 4.58229 4.66003 4.73929 4.78754 4.85430 4.90339 4.91135 4.92347 4.99859 5.02665 5.05314 5.11249 5.16662 5.29836 5.37968 5.45205 5.47941 5.49836 5.65624 5.76269 5.89291 6.23522 6.28153 6.36804 7.04917 7.15937 7.16441 7.88237 8.29867 9.21111 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008014 B = 0.004122 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3493.201287 B = 6790.465845 C = 9261.090143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.455 5.455 5 C 0.195 3.805 6 N -0.527 5.527 7 C -0.018 4.018 8 C -0.107 4.107 9 H 0.104 0.896 10 C 0.529 3.471 11 O -0.568 6.568 12 N -0.600 5.600 13 C 0.112 3.888 14 C -0.118 4.118 15 C -0.125 4.125 16 C 0.165 3.835 17 H 0.056 0.944 18 N -0.606 5.606 19 C 0.179 3.821 20 C -0.260 4.260 21 H 0.071 0.929 22 C -0.049 4.049 23 N -0.935 5.935 24 Si 0.960 3.040 25 H -0.283 1.283 26 H -0.296 1.296 27 H -0.276 1.276 28 C 0.102 3.898 29 C -0.107 4.107 30 C 0.103 3.897 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.210 0.790 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.042 0.958 43 H 0.003 0.997 44 H 0.014 0.986 45 H 0.032 0.968 46 H 0.247 0.753 47 H 0.086 0.914 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.107 0.893 51 H 0.125 0.875 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 11.965 -16.403 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.167 4.167 3 C -0.178 4.178 4 N -0.137 5.137 5 C -0.068 4.068 6 N -0.247 5.247 7 C -0.057 4.057 8 C -0.129 4.129 9 H 0.122 0.878 10 C 0.318 3.682 11 O -0.448 6.448 12 N -0.332 5.332 13 C -0.010 4.010 14 C -0.157 4.157 15 C -0.164 4.164 16 C 0.057 3.943 17 H 0.074 0.926 18 N -0.329 5.329 19 C 0.034 3.966 20 C -0.390 4.390 21 H 0.089 0.911 22 C -0.244 4.244 23 N -0.582 5.582 24 Si 0.789 3.211 25 H -0.209 1.209 26 H -0.222 1.222 27 H -0.201 1.201 28 C -0.022 4.022 29 C -0.144 4.144 30 C -0.018 4.018 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.227 0.773 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.021 0.979 44 H 0.033 0.967 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.104 0.896 48 H 0.089 0.911 49 H 0.096 0.904 50 H 0.125 0.875 51 H 0.143 0.857 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.901 11.311 -16.750 20.231 hybrid contribution -0.254 0.600 1.455 1.594 sum -1.155 11.911 -15.294 19.420 Atomic orbital electron populations 1.20045 0.86208 1.03231 1.02404 1.21387 0.97872 0.88479 1.09007 1.22859 0.82306 1.01470 1.11208 1.45578 1.07705 1.06919 1.53520 1.23112 0.94407 0.82751 1.06484 1.69887 1.00926 1.32370 1.21533 1.20089 0.86103 0.95499 1.04003 1.21392 0.91865 0.96474 1.03131 0.87845 1.20452 0.86887 0.79491 0.81417 1.90657 1.55352 1.68409 1.30350 1.48185 1.19594 1.34175 1.31246 1.21708 0.83482 0.97800 0.97982 1.21830 0.98627 1.01651 0.93593 1.21967 0.96697 0.99631 0.98138 1.20643 0.89882 0.96467 0.87263 0.92591 1.44089 1.56957 1.11914 1.19917 1.20495 0.96616 0.84722 0.94726 1.19480 1.38723 0.90243 0.90595 0.91092 1.25592 1.02722 0.96918 0.99149 1.70230 1.50575 1.10723 1.26667 0.85455 0.78911 0.77932 0.78846 1.20896 1.22242 1.20142 1.22268 0.92812 1.00811 0.86317 1.21672 0.99036 0.93526 1.00210 1.22292 0.80136 0.94259 1.05119 0.91480 0.92275 0.88845 0.77303 0.88833 0.88873 0.90445 0.88994 0.88836 0.92048 0.92513 0.93928 0.97904 0.96686 0.94917 0.94393 0.89625 0.91109 0.90395 0.87468 0.85739 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.19 10.42 71.23 0.74 -0.45 16 2 C -0.04 -1.01 7.10 41.40 0.29 -0.72 16 3 C -0.05 -0.93 11.55 83.22 0.96 0.03 16 4 N -0.45 -9.86 3.13 -513.83 -1.61 -11.47 16 5 C 0.20 5.41 7.65 138.23 1.06 6.47 16 6 N -0.53 -16.93 11.24 -175.69 -1.98 -18.90 16 7 C -0.02 -0.44 5.28 30.09 0.16 -0.28 16 8 C -0.11 -2.38 1.68 -11.35 -0.02 -2.40 16 9 H 0.10 2.39 7.13 -2.39 -0.02 2.37 16 10 C 0.53 13.84 6.90 87.66 0.60 14.45 16 11 O -0.57 -17.18 15.50 -3.04 -0.05 -17.23 16 12 N -0.60 -15.87 2.98 -819.75 -2.44 -18.31 16 13 C 0.11 2.67 6.42 86.36 0.55 3.23 16 14 C -0.12 -2.90 6.08 30.67 0.19 -2.71 16 15 C -0.12 -4.07 5.15 30.62 0.16 -3.91 16 16 C 0.17 6.03 2.72 44.93 0.12 6.15 16 17 H 0.06 2.13 7.84 -2.39 -0.02 2.11 16 18 N -0.61 -28.34 2.82 -703.13 -1.98 -30.32 16 19 C 0.18 8.45 8.03 127.77 1.03 9.47 16 20 C -0.26 -13.69 9.62 84.03 0.81 -12.88 16 21 H 0.07 3.61 7.80 -2.91 -0.02 3.59 16 22 C -0.05 -2.65 5.06 84.86 0.43 -2.22 16 23 N -0.94 -54.25 10.64 21.65 0.23 -54.02 16 24 Si 0.96 44.45 29.58 68.60 2.03 46.48 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 28 C 0.10 3.08 4.89 86.22 0.42 3.50 16 29 C -0.11 -1.83 4.58 30.73 0.14 -1.69 16 30 C 0.10 1.45 6.98 86.47 0.60 2.05 16 31 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.21 2.49 8.06 -2.91 -0.02 2.46 16 35 H 0.09 2.52 6.22 -2.39 -0.01 2.51 16 36 H 0.09 2.25 8.11 -2.39 -0.02 2.24 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 2.18 7.04 -2.39 -0.02 2.16 16 39 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.86 7.72 -2.39 -0.02 1.84 16 42 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.00 0.14 7.43 -2.38 -0.02 0.12 16 44 H 0.01 0.76 7.16 -2.39 -0.02 0.75 16 45 H 0.03 1.29 6.35 -2.39 -0.02 1.27 16 46 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 47 H 0.09 2.60 4.55 -2.39 -0.01 2.59 16 48 H 0.07 2.17 6.48 -2.39 -0.02 2.15 16 49 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 50 H 0.11 1.66 8.03 -2.39 -0.02 1.64 16 51 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 52 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -70.90 396.96 3.36 -67.54 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.91 Total: 18.15 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 8.25 Total: 18.08 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -7.78 Total: -133.02 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.05 Total: -17.23 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -70.90 3.36 -67.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027463214.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.074 kcal (2) G-P(sol) polarization free energy of solvation -70.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds