Wall clock time and date at job start Wed Apr 1 2020 04:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34854 * 125.96461 * 2 1 4 4 N 1.36309 * 106.68789 * 179.97438 * 3 2 1 5 5 C 1.35415 * 107.40135 * 0.03289 * 4 3 2 6 6 N 1.30097 * 108.63089 * 359.95380 * 5 4 3 7 7 C 1.51043 * 123.98643 * 179.91841 * 5 4 3 8 8 C 1.53405 * 108.20253 * 344.01165 * 7 5 4 9 9 H 1.08998 * 109.51179 * 288.91960 * 8 7 5 10 10 C 1.50703 * 109.51057 * 168.82309 * 8 7 5 11 11 O 1.21273 * 120.00102 * 247.11729 * 10 8 7 12 12 N 1.34777 * 119.99630 * 67.11886 * 10 8 7 13 13 C 1.46932 * 120.62787 * 183.15681 * 12 10 8 14 14 C 1.52758 * 109.00881 * 233.58434 * 13 12 10 15 15 C 1.53048 * 109.38161 * 305.58698 * 14 13 12 16 16 C 1.53039 * 109.53710 * 61.24026 * 15 14 13 17 17 H 1.09001 * 109.50374 * 58.58621 * 16 15 14 18 18 N 1.46499 * 109.49841 * 178.68595 * 16 15 14 19 19 C 1.46500 * 120.00332 * 59.83467 * 18 16 15 20 20 C 1.36944 * 119.99951 * 239.84101 * 18 16 15 21 21 H 1.08004 * 119.99607 * 19.78742 * 20 18 16 22 22 C 1.38807 * 119.99722 * 199.79471 * 20 18 16 23 23 N 1.31616 * 120.00433 * 15.33204 * 22 20 18 24 24 Si 1.86802 * 119.99621 * 195.33544 * 22 20 18 25 25 H 1.48497 * 109.47538 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47347 * 119.99809 * 24 22 20 27 27 H 1.48507 * 109.47040 * 239.99719 * 24 22 20 28 28 C 1.46929 * 120.63301 * 3.43269 * 12 10 8 29 29 C 1.53126 * 109.24169 * 48.83919 * 8 7 5 30 30 C 1.46479 * 127.77696 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.46682 * 270.01387 * 1 2 3 32 32 H 1.09001 * 109.46690 * 30.01269 * 1 2 3 33 33 H 1.08991 * 109.47395 * 150.01694 * 1 2 3 34 34 H 1.07997 * 126.65733 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.72043 * 103.68513 * 7 5 4 36 36 H 1.08998 * 109.72001 * 224.33865 * 7 5 4 37 37 H 1.08998 * 109.58592 * 353.41786 * 13 12 10 38 38 H 1.08996 * 109.58385 * 113.84325 * 13 12 10 39 39 H 1.08996 * 109.56629 * 185.55527 * 14 13 12 40 40 H 1.08995 * 109.36289 * 65.49322 * 14 13 12 41 41 H 1.09001 * 109.46002 * 301.22031 * 15 14 13 42 42 H 1.08995 * 109.44716 * 181.25181 * 15 14 13 43 43 H 1.08997 * 109.47165 * 94.86853 * 19 18 16 44 44 H 1.09001 * 109.47390 * 214.87423 * 19 18 16 45 45 H 1.09007 * 109.46697 * 334.87283 * 19 18 16 46 46 H 0.97002 * 120.00366 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.58545 * 246.15219 * 28 12 10 48 48 H 1.08994 * 109.58508 * 6.58740 * 28 12 10 49 49 H 1.08998 * 109.46783 * 170.51207 * 29 8 7 50 50 H 1.09009 * 109.45655 * 50.53875 * 29 8 7 51 51 H 1.09006 * 109.57763 * 282.66274 * 30 4 3 52 52 H 1.08998 * 109.58171 * 43.06922 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6415 0.0006 5 6 3.5414 -0.7119 0.0002 6 7 2.2956 -1.0870 0.0004 7 6 4.7655 -1.5968 -0.0012 8 6 5.9742 -0.7421 -0.4033 9 1 5.9055 -0.4894 -1.4614 10 6 7.2432 -1.5150 -0.1518 11 8 8.0160 -1.1487 0.7081 12 7 7.5194 -2.6132 -0.8826 13 6 8.7176 -3.4164 -0.6033 14 6 9.5231 -3.5729 -1.8918 15 6 8.6221 -4.1476 -2.9874 16 6 7.4631 -3.1845 -3.2543 17 1 7.8581 -2.2136 -3.5534 18 7 6.6187 -3.7203 -4.3248 19 6 5.9692 -5.0234 -4.1628 20 6 6.4365 -3.0031 -5.4771 21 1 7.1354 -2.2243 -5.7445 22 6 5.3537 -3.2771 -6.3012 23 7 4.3481 -3.9960 -5.8495 24 14 5.3239 -2.6254 -8.0516 25 1 6.5638 -1.8512 -8.3129 26 1 5.2408 -3.7633 -9.0022 27 1 4.1429 -1.7431 -8.2313 28 6 6.6312 -3.0267 -1.9776 29 6 5.9831 0.5429 0.4295 30 6 4.8149 1.4381 0.0013 31 1 -0.3633 0.0002 1.0277 32 1 -0.3633 0.8899 -0.5140 33 1 -0.3634 -0.8900 -0.5135 34 1 1.9765 2.1222 -0.0004 35 1 4.9222 -2.0093 0.9955 36 1 4.6330 -2.4068 -0.7184 37 1 9.3270 -2.9144 0.1482 38 1 8.4214 -4.4000 -0.2391 39 1 10.3611 -4.2481 -1.7187 40 1 9.8988 -2.5985 -2.2038 41 1 8.2270 -5.1107 -2.6645 42 1 9.2015 -4.2805 -3.9010 43 1 4.9560 -4.8803 -3.7873 44 1 5.9313 -5.5328 -5.1257 45 1 6.5372 -5.6269 -3.4547 46 1 3.5915 -4.1878 -6.4255 47 1 6.1615 -3.9780 -1.7276 48 1 5.8645 -2.2676 -2.1325 49 1 6.9229 1.0718 0.2712 50 1 5.8810 0.2919 1.4854 51 1 4.9995 1.8259 -1.0006 52 1 4.7131 2.2662 0.7027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027463215.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:41 Heat of formation + Delta-G solvation = 45.360358 kcal Electronic energy + Delta-G solvation = -32165.554908 eV Core-core repulsion = 28166.393763 eV Total energy + Delta-G solvation = -3999.161145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.34233 -40.26158 -37.77576 -36.35504 -34.98638 -33.62967 -32.30058 -31.56377 -31.38028 -29.06061 -28.67245 -27.32690 -26.07281 -25.30452 -23.99371 -23.65130 -22.91635 -21.32884 -20.39402 -19.66584 -19.10451 -18.56478 -17.20440 -16.89554 -16.65126 -16.12477 -15.45570 -15.40106 -14.94549 -14.43195 -14.29022 -14.13572 -13.96147 -13.88478 -13.72708 -13.51841 -13.44919 -13.03742 -12.69444 -12.64333 -12.42811 -12.34590 -12.24783 -12.05994 -11.77336 -11.69484 -11.33918 -11.27632 -11.15048 -11.02843 -10.85290 -10.57935 -10.48624 -10.38709 -10.30116 -9.87572 -9.84498 -9.83061 -9.59321 -9.45596 -8.65227 -8.39507 -8.12872 -6.86016 -5.78663 -3.22704 2.06967 2.64893 2.75508 3.08028 3.16586 3.34212 3.42083 3.43529 4.11664 4.32836 4.39823 4.45649 4.47566 4.85711 4.90045 5.00229 5.07758 5.08795 5.21176 5.22250 5.24922 5.29586 5.37460 5.38156 5.50615 5.55993 5.60887 5.62108 5.65736 5.72927 5.75398 5.86035 5.90795 5.93419 6.02694 6.06809 6.09620 6.14316 6.29587 6.33030 6.36020 6.64203 6.72408 6.77519 6.85270 6.87477 7.20164 7.34010 7.55011 7.65970 7.76451 8.20900 8.23769 8.32095 9.16448 9.79789 10.26870 11.25930 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007803 B = 0.004307 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3587.586205 B = 6498.795419 C = 8979.679456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.004 4.004 3 C -0.058 4.058 4 N -0.456 5.456 5 C 0.219 3.781 6 N -0.481 5.481 7 C -0.025 4.025 8 C -0.114 4.114 9 H 0.107 0.893 10 C 0.526 3.474 11 O -0.552 6.552 12 N -0.601 5.601 13 C 0.112 3.888 14 C -0.130 4.130 15 C -0.134 4.134 16 C 0.169 3.831 17 H 0.065 0.935 18 N -0.592 5.592 19 C 0.160 3.840 20 C -0.259 4.259 21 H 0.069 0.931 22 C 0.005 3.995 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.085 3.915 29 C -0.112 4.112 30 C 0.104 3.896 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.172 0.828 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.030 0.970 44 H 0.044 0.956 45 H 0.000 1.000 46 H 0.253 0.747 47 H 0.069 0.931 48 H 0.086 0.914 49 H 0.098 0.902 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.789 7.820 13.162 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.133 4.133 3 C -0.191 4.191 4 N -0.140 5.140 5 C -0.043 4.043 6 N -0.200 5.200 7 C -0.064 4.064 8 C -0.135 4.135 9 H 0.125 0.875 10 C 0.313 3.687 11 O -0.431 6.431 12 N -0.333 5.333 13 C -0.010 4.010 14 C -0.169 4.169 15 C -0.173 4.173 16 C 0.059 3.941 17 H 0.083 0.917 18 N -0.313 5.313 19 C 0.016 3.984 20 C -0.388 4.388 21 H 0.087 0.913 22 C -0.194 4.194 23 N -0.547 5.547 24 Si 0.731 3.269 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.218 1.218 28 C -0.039 4.039 29 C -0.150 4.150 30 C -0.019 4.019 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.189 0.811 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.048 0.952 44 H 0.063 0.937 45 H 0.019 0.981 46 H 0.063 0.937 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.116 0.884 50 H 0.100 0.900 51 H 0.106 0.894 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.868 7.235 13.485 15.417 hybrid contribution 0.008 1.184 -1.199 1.686 sum 1.876 8.420 12.286 15.012 Atomic orbital electron populations 1.19991 0.87817 1.02635 1.01796 1.20786 0.96438 0.88315 1.07739 1.22241 0.82888 1.00256 1.13709 1.45350 1.06502 1.07426 1.54674 1.23022 0.94633 0.81421 1.05256 1.69965 0.99619 1.30332 1.20132 1.20210 0.85974 0.95899 1.04361 1.21412 0.93352 0.95804 1.02967 0.87456 1.20204 0.86963 0.80457 0.81053 1.90649 1.50149 1.68225 1.34106 1.48280 1.25501 1.26161 1.33388 1.21501 0.86488 0.95073 0.97943 1.21821 0.98143 1.01557 0.95372 1.22094 0.97527 0.99908 0.97811 1.20612 0.90354 0.96035 0.87075 0.91713 1.43967 1.55525 1.17782 1.14071 1.20815 0.94603 0.84773 0.98256 1.19237 1.06168 1.16443 0.96981 0.91314 1.24941 0.95118 1.00106 0.99208 1.70090 1.07284 1.42542 1.34751 0.86239 0.77399 0.78173 0.85045 1.20359 1.21531 1.21764 1.22881 0.93429 1.00977 0.86619 1.21696 0.97916 0.94535 1.00850 1.22042 0.82077 0.94303 1.03428 0.91757 0.91563 0.91115 0.81078 0.89038 0.87331 0.89472 0.91699 0.91251 0.91876 0.92161 0.91659 0.95165 0.93700 0.98104 0.93668 0.91293 0.89561 0.88375 0.89995 0.89442 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.42 36.01 0.38 -0.35 16 2 C 0.00 -0.05 7.10 -82.71 -0.59 -0.64 16 3 C -0.06 -0.73 11.55 -16.76 -0.19 -0.92 16 4 N -0.46 -5.87 3.13 -113.74 -0.36 -6.23 16 5 C 0.22 3.35 7.65 -155.24 -1.19 2.17 16 6 N -0.48 -8.29 11.24 -6.88 -0.08 -8.37 16 7 C -0.03 -0.35 5.24 -27.51 -0.14 -0.49 16 8 C -0.11 -1.45 1.69 -91.50 -0.15 -1.60 16 9 H 0.11 1.44 7.14 -51.93 -0.37 1.07 16 10 C 0.53 7.64 6.97 -10.98 -0.08 7.56 16 11 O -0.55 -9.14 15.34 5.56 0.09 -9.05 16 12 N -0.60 -8.71 2.98 -173.03 -0.52 -9.23 16 13 C 0.11 1.47 6.41 -3.93 -0.03 1.45 16 14 C -0.13 -1.68 6.07 -26.83 -0.16 -1.84 16 15 C -0.13 -2.11 5.13 -26.69 -0.14 -2.25 16 16 C 0.17 3.13 2.74 -67.81 -0.19 2.94 16 17 H 0.06 1.26 7.85 -51.93 -0.41 0.85 16 18 N -0.59 -13.70 2.82 -173.34 -0.49 -14.19 16 19 C 0.16 3.69 7.92 59.85 0.47 4.16 16 20 C -0.26 -6.75 9.62 -15.06 -0.14 -6.90 16 21 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 22 C 0.01 0.14 5.06 -17.43 -0.09 0.05 16 23 N -0.90 -25.48 10.66 55.49 0.59 -24.88 16 24 Si 0.90 21.33 29.58 -169.99 -5.03 16.30 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 C 0.09 1.39 4.57 -3.71 -0.02 1.38 16 29 C -0.11 -1.18 4.62 -26.52 -0.12 -1.30 16 30 C 0.10 0.98 6.98 -3.91 -0.03 0.95 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 36 H 0.11 1.62 6.06 -51.93 -0.31 1.31 16 37 H 0.09 1.16 7.00 -51.93 -0.36 0.79 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.95 6.71 -51.93 -0.35 0.60 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.03 0.76 7.43 -51.93 -0.39 0.37 16 44 H 0.04 1.14 7.17 -51.93 -0.37 0.77 16 45 H 0.00 0.01 6.45 -51.93 -0.34 -0.33 16 46 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.07 1.16 7.51 -51.93 -0.39 0.77 16 48 H 0.09 1.49 4.79 -51.93 -0.25 1.24 16 49 H 0.10 0.97 7.91 -51.93 -0.41 0.56 16 50 H 0.08 0.90 8.12 -51.92 -0.42 0.48 16 51 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 396.49 15.07 5.98 5.98 Total: -1.00 -32.07 396.49 -10.78 -42.85 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -8.56 Total: 2.45 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.40 Total: 4.37 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.85 Total: -62.90 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.07 -10.78 -42.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027463215.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.212 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds