Wall clock time and date at job start Wed Apr 1 2020 03:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30836 * 125.89473 * 2 1 4 4 N 1.40085 * 108.20389 * 179.97438 * 3 2 1 5 5 H 0.96995 * 126.04268 * 180.02562 * 4 3 2 6 6 C 1.34953 * 107.92319 * 359.75906 * 4 3 2 7 7 C 1.50697 * 126.12613 * 180.23755 * 6 4 3 8 8 C 1.35318 * 107.74628 * 0.38939 * 6 4 3 9 9 C 1.50693 * 126.04138 * 179.86990 * 8 6 4 10 10 H 1.09007 * 109.47045 * 4.68672 * 9 8 6 11 11 C 1.53000 * 109.47126 * 124.68333 * 9 8 6 12 12 C 1.52997 * 109.47608 * 244.68762 * 9 8 6 13 13 C 1.50700 * 109.47542 * 173.22587 * 12 9 8 14 14 O 1.21280 * 119.99782 * 359.97438 * 13 12 9 15 15 N 1.34777 * 120.00169 * 180.02562 * 13 12 9 16 16 C 1.48438 * 120.83115 * 359.61561 * 15 13 12 17 17 C 1.53889 * 107.37796 * 132.53899 * 16 15 13 18 18 H 1.08999 * 112.09379 * 182.51282 * 17 16 15 19 19 C 1.54548 * 108.36416 * 306.85079 * 17 16 15 20 20 C 1.54287 * 104.84645 * 89.30142 * 19 17 16 21 21 C 1.54543 * 104.84745 * 359.97438 * 20 19 17 22 22 H 1.09006 * 112.18021 * 146.40683 * 21 20 19 23 23 C 1.47157 * 120.71272 * 179.97438 * 15 13 12 24 24 N 1.48305 * 104.36272 * 24.70079 * 21 20 19 25 25 C 1.36939 * 128.07989 * 139.05508 * 24 21 20 26 26 H 1.08000 * 119.99760 * 193.34130 * 25 24 21 27 27 C 1.38811 * 119.99683 * 13.34787 * 25 24 21 28 28 N 1.31612 * 120.00305 * 10.96639 * 27 25 24 29 29 Si 1.86796 * 119.99731 * 190.96371 * 27 25 24 30 30 H 1.48497 * 109.47485 * 94.84868 * 29 27 25 31 31 H 1.48504 * 109.47052 * 214.84922 * 29 27 25 32 32 H 1.48503 * 109.47479 * 334.84489 * 29 27 25 33 33 H 1.09004 * 109.46651 * 264.62662 * 1 2 3 34 34 H 1.08998 * 109.46902 * 24.62293 * 1 2 3 35 35 H 1.08991 * 109.47160 * 144.62873 * 1 2 3 36 36 H 1.09005 * 109.47575 * 270.17853 * 7 6 4 37 37 H 1.09003 * 109.47620 * 30.17941 * 7 6 4 38 38 H 1.09000 * 109.47128 * 150.18400 * 7 6 4 39 39 H 1.08993 * 109.46862 * 60.00455 * 11 9 8 40 40 H 1.09005 * 109.47095 * 180.02562 * 11 9 8 41 41 H 1.08997 * 109.47282 * 300.00083 * 11 9 8 42 42 H 1.09000 * 109.46842 * 53.21900 * 12 9 8 43 43 H 1.09007 * 109.47080 * 293.22533 * 12 9 8 44 44 H 1.08994 * 109.56900 * 13.38842 * 16 15 13 45 45 H 1.09005 * 110.56800 * 252.24724 * 16 15 13 46 46 H 1.08994 * 110.36363 * 208.14055 * 19 17 16 47 47 H 1.08993 * 110.36579 * 330.46284 * 19 17 16 48 48 H 1.08999 * 110.35979 * 241.15876 * 20 19 17 49 49 H 1.09000 * 110.45658 * 118.89064 * 20 19 17 50 50 H 1.09005 * 109.74827 * 107.60720 * 23 15 13 51 51 H 1.08999 * 109.74969 * 346.88166 * 23 15 13 52 52 H 0.96998 * 120.00353 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 1 4.3908 1.2080 0.0011 6 6 3.6142 -0.7153 0.0064 7 6 4.8350 -1.5988 0.0141 8 6 2.3272 -1.1330 0.0006 9 6 1.8599 -2.5657 0.0011 10 1 2.7207 -3.2285 0.0909 11 6 0.9153 -2.7936 1.1829 12 6 1.1222 -2.8622 -1.3061 13 6 0.8010 -4.3327 -1.3793 14 8 1.1301 -5.0710 -0.4752 15 7 0.1488 -4.8276 -2.4499 16 6 -0.2691 -3.9395 -3.5635 17 6 0.1548 -4.6192 -4.8774 18 1 -0.0778 -4.0075 -5.7491 19 6 1.6601 -4.9575 -4.7870 20 6 1.7115 -6.3689 -4.1659 21 6 0.2326 -6.7548 -3.9369 22 1 0.0609 -7.8231 -4.0694 23 6 -0.1723 -6.2610 -2.5379 24 7 -0.5172 -5.9402 -4.9236 25 6 -1.5812 -6.3195 -5.6976 26 1 -1.8956 -5.6998 -6.5244 27 6 -2.2558 -7.5004 -5.4195 28 7 -2.0198 -8.1441 -4.2960 29 14 -3.4985 -8.1757 -6.6396 30 1 -2.8370 -9.1723 -7.5196 31 1 -4.6115 -8.8272 -5.9033 32 1 -4.0351 -7.0647 -7.4660 33 1 -0.3633 -0.0962 1.0232 34 1 -0.3633 0.9342 -0.4282 35 1 -0.3633 -0.8379 -0.5948 36 1 5.1347 -1.8136 -1.0118 37 1 5.6486 -1.0900 0.5311 38 1 4.6050 -2.5319 0.5283 39 1 0.0547 -2.1309 1.0931 40 1 0.5777 -3.8300 1.1836 41 1 1.4409 -2.5825 2.1141 42 1 1.7537 -2.5856 -2.1504 43 1 0.1974 -2.2861 -1.3401 44 1 0.2311 -2.9757 -3.4692 45 1 -1.3498 -3.7968 -3.5546 46 1 2.1078 -4.9639 -5.7807 47 1 2.1719 -4.2414 -4.1440 48 1 2.2485 -6.3466 -3.2176 49 1 2.1850 -7.0703 -4.8528 50 1 -1.2423 -6.4084 -2.3907 51 1 0.3837 -6.8103 -1.7782 52 1 -2.4914 -8.9691 -4.1015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029365421.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:04 Heat of formation + Delta-G solvation = 61.824345 kcal Electronic energy + Delta-G solvation = -32311.429065 eV Core-core repulsion = 28312.981852 eV Total energy + Delta-G solvation = -3998.447213 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.57555 -39.95035 -37.99382 -35.20046 -33.65636 -33.46236 -32.33862 -30.95023 -30.39795 -29.30284 -28.26901 -27.87687 -26.88001 -25.82092 -23.83190 -23.64098 -22.21193 -20.29100 -19.78634 -19.58777 -19.15627 -18.39905 -17.15536 -16.90478 -16.11318 -15.57550 -15.35686 -15.11649 -14.70886 -14.35754 -14.02304 -13.81253 -13.75386 -13.52525 -13.23697 -13.04201 -12.97577 -12.88893 -12.74424 -12.60170 -12.51222 -12.23409 -12.01223 -11.84901 -11.65827 -11.57004 -11.22361 -11.16824 -10.93128 -10.86948 -10.84019 -10.75530 -10.32665 -10.23712 -10.02158 -9.83632 -9.63937 -9.53677 -9.35067 -9.11460 -8.76312 -8.42931 -7.98372 -6.85021 -5.83909 -3.18436 1.72352 2.60039 2.71244 3.21217 3.35634 3.41504 3.43435 3.68667 4.41280 4.48122 4.53991 4.81326 4.93614 5.03280 5.16900 5.17876 5.22121 5.27825 5.32089 5.44274 5.49338 5.56635 5.60502 5.63184 5.66552 5.69339 5.76412 5.80513 5.84970 5.88911 5.95828 5.98087 6.09029 6.19306 6.26729 6.34827 6.41046 6.43211 6.51390 6.53921 6.66259 6.68499 6.73975 6.81797 6.89594 7.02981 7.15267 7.32869 7.51152 7.58808 7.71294 8.13481 8.17037 8.80981 9.05572 9.68013 10.44095 11.28772 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019406 B = 0.002766 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.499696 B =10121.180942 C =10253.934164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.089 3.911 3 N -0.300 5.300 4 N -0.480 5.480 5 H 0.435 0.565 6 C 0.088 3.912 7 C -0.095 4.095 8 C -0.222 4.222 9 C 0.007 3.993 10 H 0.081 0.919 11 C -0.150 4.150 12 C -0.132 4.132 13 C 0.507 3.493 14 O -0.558 6.558 15 N -0.594 5.594 16 C 0.096 3.904 17 C 0.133 3.867 18 H 0.076 0.924 19 C -0.121 4.121 20 C -0.136 4.136 21 C 0.167 3.833 22 H 0.119 0.881 23 C 0.113 3.887 24 N -0.585 5.585 25 C -0.227 4.227 26 H 0.077 0.923 27 C -0.003 4.003 28 N -0.912 5.912 29 Si 0.911 3.089 30 H -0.289 1.289 31 H -0.291 1.291 32 H -0.281 1.281 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.051 0.949 50 H 0.076 0.924 51 H 0.068 0.932 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.955 14.327 7.502 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 N -0.123 5.123 4 N -0.189 5.189 5 H 0.279 0.721 6 C -0.040 4.040 7 C -0.154 4.154 8 C -0.233 4.233 9 C -0.013 4.013 10 H 0.100 0.900 11 C -0.207 4.207 12 C -0.172 4.172 13 C 0.295 3.705 14 O -0.438 6.438 15 N -0.326 5.326 16 C -0.029 4.029 17 C 0.024 3.976 18 H 0.094 0.906 19 C -0.160 4.160 20 C -0.175 4.175 21 C 0.060 3.940 22 H 0.136 0.864 23 C -0.010 4.010 24 N -0.306 5.306 25 C -0.355 4.355 26 H 0.095 0.905 27 C -0.200 4.200 28 N -0.558 5.558 29 Si 0.742 3.258 30 H -0.217 1.217 31 H -0.218 1.218 32 H -0.206 1.206 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.094 0.906 51 H 0.086 0.914 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.912 14.995 7.901 20.159 hybrid contribution -0.243 -0.703 -0.672 1.002 sum 10.669 14.292 7.230 19.245 Atomic orbital electron populations 1.20387 0.86932 1.03395 1.03164 1.22169 0.96840 0.90141 0.98608 1.77261 0.86491 1.22387 1.26188 1.46108 1.07220 1.04785 1.60759 0.72136 1.20888 0.97006 0.84831 1.01291 1.20499 0.92671 0.98596 1.03602 1.19776 0.90988 0.96265 1.16299 1.19127 0.98565 0.89713 0.93879 0.90032 1.21971 0.98758 1.03252 0.96700 1.21780 1.02035 0.94026 0.99323 1.20491 0.78142 0.90073 0.81811 1.90606 1.54776 1.60638 1.37810 1.48549 1.55240 1.10135 1.18693 1.22740 0.99829 0.91979 0.88402 1.21937 0.91782 0.89643 0.94219 0.90590 1.22449 0.97029 0.97185 0.99350 1.22630 0.99696 0.96089 0.99081 1.21904 0.86443 0.98799 0.86885 0.86390 1.22351 1.01251 0.78133 0.99310 1.45182 1.34028 1.05524 1.45868 1.19011 1.04880 1.05283 1.06307 0.90534 1.24802 0.99074 0.99167 0.97007 1.69844 1.44920 1.18617 1.22402 0.86123 0.80510 0.78935 0.80271 1.21658 1.21790 1.20646 0.90306 0.91010 0.89917 0.90019 0.91266 0.89201 0.92982 0.90474 0.93411 0.89587 0.89342 0.91633 0.91460 0.92763 0.93066 0.92862 0.92973 0.90570 0.91370 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 8.66 36.01 0.31 -0.47 16 2 C 0.09 1.06 7.05 -82.40 -0.58 0.48 16 3 N -0.30 -3.73 12.70 33.67 0.43 -3.30 16 4 N -0.48 -4.73 7.36 33.48 0.25 -4.48 16 5 H 0.44 2.87 8.96 -182.61 -1.64 1.23 16 6 C 0.09 0.88 7.21 -82.26 -0.59 0.29 16 7 C -0.10 -0.68 10.10 36.00 0.36 -0.31 16 8 C -0.22 -2.57 4.80 -105.06 -0.50 -3.08 16 9 C 0.01 0.09 2.19 -91.78 -0.20 -0.11 16 10 H 0.08 1.06 6.51 -51.93 -0.34 0.72 16 11 C -0.15 -1.88 8.77 37.16 0.33 -1.56 16 12 C -0.13 -1.71 3.39 -27.88 -0.09 -1.80 16 13 C 0.51 8.62 7.43 -10.99 -0.08 8.53 16 14 O -0.56 -10.97 13.54 5.56 0.08 -10.90 16 15 N -0.59 -10.86 2.26 -170.55 -0.39 -11.24 16 16 C 0.10 1.60 5.91 -2.51 -0.01 1.59 16 17 C 0.13 2.47 4.27 -65.67 -0.28 2.19 16 18 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 19 C -0.12 -2.06 6.19 -25.24 -0.16 -2.21 16 20 C -0.14 -2.58 6.19 -25.25 -0.16 -2.74 16 21 C 0.17 3.73 3.13 -65.72 -0.21 3.53 16 22 H 0.12 3.02 6.30 -51.93 -0.33 2.69 16 23 C 0.11 2.43 5.82 -3.27 -0.02 2.41 16 24 N -0.58 -13.56 2.80 -152.67 -0.43 -13.98 16 25 C -0.23 -5.83 10.37 -15.06 -0.16 -5.99 16 26 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 27 C 0.00 -0.09 5.41 -17.43 -0.09 -0.18 16 28 N -0.91 -24.85 10.50 55.49 0.58 -24.27 16 29 Si 0.91 21.05 29.57 -169.99 -5.03 16.03 16 30 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 31 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 32 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 33 H 0.08 0.69 7.61 -51.93 -0.40 0.30 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.77 5.27 -51.93 -0.27 0.50 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.67 7.08 -51.93 -0.37 0.30 16 39 H 0.05 0.59 5.55 -51.93 -0.29 0.30 16 40 H 0.08 1.16 6.11 -51.93 -0.32 0.84 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.06 7.61 -51.93 -0.40 0.66 16 43 H 0.09 1.06 5.57 -51.93 -0.29 0.77 16 44 H 0.07 0.88 6.13 -51.93 -0.32 0.56 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.05 0.78 7.86 -51.93 -0.41 0.38 16 48 H 0.05 0.99 7.84 -51.93 -0.41 0.59 16 49 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.08 1.88 7.91 -51.93 -0.41 1.47 16 51 H 0.07 1.49 7.11 -51.93 -0.37 1.12 16 52 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 391.65 15.07 5.90 5.90 Total: -1.00 -30.70 391.65 -10.21 -40.91 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -9.47 Total: 4.78 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.14 Total: 0.56 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.44 Total: -57.28 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.70 -10.21 -40.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029365421.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.737 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds