Wall clock time and date at job start Wed Apr 1 2020 03:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30836 * 125.89473 * 2 1 4 4 N 1.40085 * 108.20389 * 179.97438 * 3 2 1 5 5 H 0.96995 * 126.04268 * 180.02562 * 4 3 2 6 6 C 1.34953 * 107.92319 * 359.75906 * 4 3 2 7 7 C 1.50697 * 126.12613 * 180.23755 * 6 4 3 8 8 C 1.35318 * 107.74628 * 0.38939 * 6 4 3 9 9 C 1.50693 * 126.04138 * 179.86990 * 8 6 4 10 10 H 1.09007 * 109.47045 * 4.68672 * 9 8 6 11 11 C 1.53000 * 109.47126 * 124.68333 * 9 8 6 12 12 C 1.52997 * 109.47608 * 244.68762 * 9 8 6 13 13 C 1.50700 * 109.47542 * 173.22587 * 12 9 8 14 14 O 1.21280 * 119.99782 * 359.97438 * 13 12 9 15 15 N 1.34777 * 120.00169 * 180.02562 * 13 12 9 16 16 C 1.48438 * 120.83115 * 359.61561 * 15 13 12 17 17 C 1.53889 * 107.37796 * 132.53899 * 16 15 13 18 18 H 1.08999 * 112.09379 * 182.51282 * 17 16 15 19 19 C 1.54548 * 108.36416 * 306.85079 * 17 16 15 20 20 C 1.54287 * 104.84645 * 89.30142 * 19 17 16 21 21 C 1.54543 * 104.84745 * 359.97438 * 20 19 17 22 22 H 1.09006 * 112.18021 * 146.40683 * 21 20 19 23 23 C 1.47157 * 120.71272 * 179.97438 * 15 13 12 24 24 N 1.48305 * 104.36272 * 24.70079 * 21 20 19 25 25 C 1.36939 * 128.07989 * 139.05508 * 24 21 20 26 26 H 1.08000 * 119.99760 * 193.34130 * 25 24 21 27 27 C 1.38811 * 119.99683 * 13.34787 * 25 24 21 28 28 N 1.31612 * 120.00305 * 10.96639 * 27 25 24 29 29 Si 1.86796 * 119.99731 * 190.96371 * 27 25 24 30 30 H 1.48497 * 109.47485 * 94.84868 * 29 27 25 31 31 H 1.48504 * 109.47052 * 214.84922 * 29 27 25 32 32 H 1.48503 * 109.47479 * 334.84489 * 29 27 25 33 33 H 1.09004 * 109.46651 * 264.62662 * 1 2 3 34 34 H 1.08998 * 109.46902 * 24.62293 * 1 2 3 35 35 H 1.08991 * 109.47160 * 144.62873 * 1 2 3 36 36 H 1.09005 * 109.47575 * 270.17853 * 7 6 4 37 37 H 1.09003 * 109.47620 * 30.17941 * 7 6 4 38 38 H 1.09000 * 109.47128 * 150.18400 * 7 6 4 39 39 H 1.08993 * 109.46862 * 60.00455 * 11 9 8 40 40 H 1.09005 * 109.47095 * 180.02562 * 11 9 8 41 41 H 1.08997 * 109.47282 * 300.00083 * 11 9 8 42 42 H 1.09000 * 109.46842 * 53.21900 * 12 9 8 43 43 H 1.09007 * 109.47080 * 293.22533 * 12 9 8 44 44 H 1.08994 * 109.56900 * 13.38842 * 16 15 13 45 45 H 1.09005 * 110.56800 * 252.24724 * 16 15 13 46 46 H 1.08994 * 110.36363 * 208.14055 * 19 17 16 47 47 H 1.08993 * 110.36579 * 330.46284 * 19 17 16 48 48 H 1.08999 * 110.35979 * 241.15876 * 20 19 17 49 49 H 1.09000 * 110.45658 * 118.89064 * 20 19 17 50 50 H 1.09005 * 109.74827 * 107.60720 * 23 15 13 51 51 H 1.08999 * 109.74969 * 346.88166 * 23 15 13 52 52 H 0.96998 * 120.00353 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 1 4.3908 1.2080 0.0011 6 6 3.6142 -0.7153 0.0064 7 6 4.8350 -1.5988 0.0141 8 6 2.3272 -1.1330 0.0006 9 6 1.8599 -2.5657 0.0011 10 1 2.7207 -3.2285 0.0909 11 6 0.9153 -2.7936 1.1829 12 6 1.1222 -2.8622 -1.3061 13 6 0.8010 -4.3327 -1.3793 14 8 1.1301 -5.0710 -0.4752 15 7 0.1488 -4.8276 -2.4499 16 6 -0.2691 -3.9395 -3.5635 17 6 0.1548 -4.6192 -4.8774 18 1 -0.0778 -4.0075 -5.7491 19 6 1.6601 -4.9575 -4.7870 20 6 1.7115 -6.3689 -4.1659 21 6 0.2326 -6.7548 -3.9369 22 1 0.0609 -7.8231 -4.0694 23 6 -0.1723 -6.2610 -2.5379 24 7 -0.5172 -5.9402 -4.9236 25 6 -1.5812 -6.3195 -5.6976 26 1 -1.8956 -5.6998 -6.5244 27 6 -2.2558 -7.5004 -5.4195 28 7 -2.0198 -8.1441 -4.2960 29 14 -3.4985 -8.1757 -6.6396 30 1 -2.8370 -9.1723 -7.5196 31 1 -4.6115 -8.8272 -5.9033 32 1 -4.0351 -7.0647 -7.4660 33 1 -0.3633 -0.0962 1.0232 34 1 -0.3633 0.9342 -0.4282 35 1 -0.3633 -0.8379 -0.5948 36 1 5.1347 -1.8136 -1.0118 37 1 5.6486 -1.0900 0.5311 38 1 4.6050 -2.5319 0.5283 39 1 0.0547 -2.1309 1.0931 40 1 0.5777 -3.8300 1.1836 41 1 1.4409 -2.5825 2.1141 42 1 1.7537 -2.5856 -2.1504 43 1 0.1974 -2.2861 -1.3401 44 1 0.2311 -2.9757 -3.4692 45 1 -1.3498 -3.7968 -3.5546 46 1 2.1078 -4.9639 -5.7807 47 1 2.1719 -4.2414 -4.1440 48 1 2.2485 -6.3466 -3.2176 49 1 2.1850 -7.0703 -4.8528 50 1 -1.2423 -6.4084 -2.3907 51 1 0.3837 -6.8103 -1.7782 52 1 -2.4914 -8.9691 -4.1015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029365421.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:03 Heat of formation + Delta-G solvation = 44.640355 kcal Electronic energy + Delta-G solvation = -32312.174219 eV Core-core repulsion = 28312.981852 eV Total energy + Delta-G solvation = -3999.192367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.38863 -41.41912 -39.45470 -36.23483 -35.30216 -34.20518 -34.08542 -32.35024 -31.39835 -31.02154 -29.19201 -28.92070 -27.61340 -27.36733 -25.42446 -25.28258 -23.27709 -21.24672 -21.16828 -21.06116 -20.19619 -19.82716 -18.51286 -17.90083 -17.62330 -16.98400 -16.56663 -16.51715 -16.04197 -15.66898 -15.49631 -15.11517 -14.62697 -14.61762 -14.48320 -14.31633 -14.16688 -14.00718 -13.70883 -13.53152 -13.46636 -13.41370 -13.21410 -13.16220 -13.03615 -12.84691 -12.75347 -12.68189 -12.55890 -12.18937 -12.01082 -11.93621 -11.80119 -11.74454 -11.42715 -11.38495 -11.14292 -11.08619 -10.77182 -10.42446 -10.13193 -9.60512 -9.25519 -8.66966 -7.81792 -5.15954 0.95329 1.50007 1.51485 1.59281 1.75836 1.85864 2.02642 2.26501 2.53804 3.37365 3.53267 3.63625 3.80151 3.86503 4.01843 4.14102 4.19287 4.25484 4.28385 4.29803 4.39157 4.42834 4.48405 4.50833 4.64078 4.73606 4.73992 4.76784 4.80230 4.82126 4.91541 4.93032 4.99128 5.04723 5.08495 5.12643 5.14129 5.17877 5.21018 5.23084 5.33464 5.38284 5.45882 5.48573 5.52085 5.58558 5.62625 5.82913 5.91687 6.26643 6.50333 6.75229 6.80756 7.09577 7.41329 7.77204 8.55520 9.29587 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019406 B = 0.002766 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.499696 B =10121.180942 C =10253.934164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.082 3.918 3 N -0.330 5.330 4 N -0.473 5.473 5 H 0.448 0.552 6 C 0.098 3.902 7 C -0.095 4.095 8 C -0.243 4.243 9 C 0.017 3.983 10 H 0.074 0.926 11 C -0.146 4.146 12 C -0.121 4.121 13 C 0.507 3.493 14 O -0.587 6.587 15 N -0.598 5.598 16 C 0.101 3.899 17 C 0.126 3.874 18 H 0.092 0.908 19 C -0.109 4.109 20 C -0.127 4.127 21 C 0.164 3.836 22 H 0.076 0.924 23 C 0.131 3.869 24 N -0.606 5.606 25 C -0.228 4.228 26 H 0.082 0.918 27 C -0.058 4.058 28 N -0.938 5.938 29 Si 0.969 3.031 30 H -0.293 1.293 31 H -0.302 1.302 32 H -0.268 1.268 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.055 0.945 49 H 0.050 0.950 50 H 0.034 0.966 51 H 0.055 0.945 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.715 17.250 6.822 22.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 N -0.154 5.154 4 N -0.182 5.182 5 H 0.294 0.706 6 C -0.032 4.032 7 C -0.153 4.153 8 C -0.254 4.254 9 C -0.003 4.003 10 H 0.092 0.908 11 C -0.203 4.203 12 C -0.160 4.160 13 C 0.297 3.703 14 O -0.468 6.468 15 N -0.330 5.330 16 C -0.023 4.023 17 C 0.019 3.981 18 H 0.110 0.890 19 C -0.148 4.148 20 C -0.166 4.166 21 C 0.056 3.944 22 H 0.094 0.906 23 C 0.006 3.994 24 N -0.328 5.328 25 C -0.357 4.357 26 H 0.100 0.900 27 C -0.252 4.252 28 N -0.586 5.586 29 Si 0.799 3.201 30 H -0.221 1.221 31 H -0.229 1.229 32 H -0.193 1.193 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.130 0.870 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.052 0.948 51 H 0.074 0.926 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.702 17.988 7.211 23.172 hybrid contribution -0.725 -1.576 -0.395 1.779 sum 11.978 16.412 6.816 21.431 Atomic orbital electron populations 1.20452 0.85998 1.03864 1.03710 1.22457 0.97665 0.90081 0.98235 1.77218 0.87588 1.23115 1.27454 1.46142 1.07090 1.05045 1.59952 0.70574 1.21290 0.97544 0.85082 0.99255 1.20606 0.92126 0.98019 1.04581 1.19695 0.91756 0.95490 1.18437 1.18962 0.97950 0.90299 0.93093 0.90792 1.21915 0.99449 1.01583 0.97401 1.21795 1.03247 0.90415 1.00586 1.21235 0.76853 0.91658 0.80553 1.90605 1.55622 1.61901 1.38689 1.48553 1.55785 1.08713 1.19915 1.22749 0.99543 0.93225 0.86761 1.22240 0.92309 0.87887 0.95711 0.89024 1.22388 0.95995 0.95914 1.00478 1.22496 0.96896 0.97751 0.99451 1.21715 0.88731 0.96740 0.87172 0.90583 1.21798 0.98274 0.80709 0.98608 1.45368 1.33827 1.07921 1.45650 1.19331 1.04955 1.05024 1.06377 0.89984 1.25493 1.01293 1.00001 0.98462 1.70045 1.46017 1.18612 1.23943 0.85201 0.78277 0.78286 0.78359 1.22053 1.22899 1.19292 0.89697 0.90412 0.89552 0.88897 0.88998 0.89634 0.91840 0.93324 0.93007 0.87589 0.87759 0.87021 0.92941 0.91445 0.90343 0.92579 0.93084 0.94788 0.92636 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 8.66 71.24 0.62 -0.78 16 2 C 0.08 1.74 7.05 43.10 0.30 2.04 16 3 N -0.33 -7.43 12.70 -47.38 -0.60 -8.03 16 4 N -0.47 -7.96 7.36 -48.00 -0.35 -8.32 16 5 H 0.45 4.62 8.96 -213.34 -1.91 2.71 16 6 C 0.10 1.66 7.21 41.40 0.30 1.96 16 7 C -0.10 -1.03 10.10 71.23 0.72 -0.31 16 8 C -0.24 -4.96 4.80 -20.15 -0.10 -5.05 16 9 C 0.02 0.38 2.19 -11.54 -0.03 0.35 16 10 H 0.07 1.78 6.51 -2.38 -0.02 1.76 16 11 C -0.15 -3.51 8.77 71.98 0.63 -2.88 16 12 C -0.12 -2.77 3.39 29.85 0.10 -2.67 16 13 C 0.51 16.50 7.43 87.66 0.65 17.15 16 14 O -0.59 -23.00 13.54 -3.03 -0.04 -23.04 16 15 N -0.60 -21.30 2.26 -811.88 -1.84 -23.13 16 16 C 0.10 3.14 5.91 86.31 0.51 3.65 16 17 C 0.13 4.37 4.27 45.48 0.19 4.56 16 18 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 19 C -0.11 -3.34 6.19 31.56 0.20 -3.15 16 20 C -0.13 -4.70 6.19 31.56 0.20 -4.51 16 21 C 0.16 7.52 3.13 45.43 0.14 7.66 16 22 H 0.08 4.13 6.30 -2.38 -0.02 4.11 16 23 C 0.13 5.85 5.82 86.52 0.50 6.36 16 24 N -0.61 -28.06 2.80 -636.94 -1.78 -29.85 16 25 C -0.23 -11.79 10.37 84.03 0.87 -10.92 16 26 H 0.08 4.06 7.85 -2.91 -0.02 4.03 16 27 C -0.06 -3.15 5.41 84.86 0.46 -2.69 16 28 N -0.94 -53.65 10.50 21.65 0.23 -53.42 16 29 Si 0.97 44.22 29.57 68.60 2.03 46.25 16 30 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 31 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 32 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 33 H 0.08 1.32 7.61 -2.39 -0.02 1.30 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.37 5.27 -2.39 -0.01 1.36 16 36 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.08 1.05 7.08 -2.39 -0.02 1.03 16 39 H 0.06 1.34 5.55 -2.39 -0.01 1.33 16 40 H 0.05 1.45 6.11 -2.38 -0.01 1.44 16 41 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.11 2.08 7.61 -2.39 -0.02 2.06 16 43 H 0.10 2.12 5.57 -2.38 -0.01 2.10 16 44 H 0.11 2.46 6.13 -2.39 -0.01 2.45 16 45 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 46 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.08 2.01 7.86 -2.39 -0.02 1.99 16 48 H 0.06 2.03 7.84 -2.39 -0.02 2.01 16 49 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.03 1.78 7.91 -2.38 -0.02 1.76 16 51 H 0.06 2.56 7.11 -2.39 -0.02 2.55 16 52 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -69.36 391.65 2.94 -66.42 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -0.97 Total: 22.36 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 6.27 Total: 10.77 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -4.35 Total: -122.75 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.04 Total: -23.04 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -69.36 2.94 -66.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029365421.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.058 kcal (2) G-P(sol) polarization free energy of solvation -69.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds