Wall clock time and date at job start Wed Apr 1 2020 03:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30834 * 125.90238 * 2 1 4 4 N 1.40077 * 108.20970 * 179.97438 * 3 2 1 5 5 H 0.97003 * 126.03738 * 179.97438 * 4 3 2 6 6 C 1.34946 * 107.92530 * 359.75605 * 4 3 2 7 7 C 1.50702 * 126.12814 * 180.23844 * 6 4 3 8 8 C 1.35312 * 107.74532 * 0.39032 * 6 4 3 9 9 C 1.50700 * 126.04078 * 179.87232 * 8 6 4 10 10 C 1.52995 * 109.47424 * 269.71683 * 9 8 6 11 11 H 1.08999 * 109.46935 * 304.99760 * 10 9 8 12 12 C 1.53004 * 109.47242 * 64.99779 * 10 9 8 13 13 C 1.50703 * 109.47399 * 184.99864 * 10 9 8 14 14 O 1.21280 * 119.99980 * 327.19910 * 13 10 9 15 15 N 1.34772 * 119.99785 * 147.19535 * 13 10 9 16 16 C 1.47623 * 120.90763 * 4.44709 * 15 13 10 17 17 C 1.53883 * 107.50260 * 132.48828 * 16 15 13 18 18 H 1.08997 * 112.09026 * 182.66221 * 17 16 15 19 19 C 1.54539 * 108.37204 * 307.00838 * 17 16 15 20 20 C 1.54273 * 104.84933 * 89.29637 * 19 17 16 21 21 C 1.54962 * 104.81139 * 359.81620 * 20 19 17 22 22 H 1.08999 * 112.25899 * 146.60419 * 21 20 19 23 23 C 1.47167 * 120.70700 * 185.13018 * 15 13 10 24 24 N 1.48311 * 107.20529 * 59.12002 * 17 16 15 25 25 C 1.36929 * 128.08080 * 106.10041 * 24 17 16 26 26 H 1.08004 * 120.00118 * 17.03001 * 25 24 17 27 27 C 1.38806 * 120.00065 * 197.03736 * 25 24 17 28 28 N 1.31617 * 120.00419 * 8.71034 * 27 25 24 29 29 Si 1.86803 * 120.00002 * 188.71254 * 27 25 24 30 30 H 1.48508 * 109.47050 * 179.97438 * 29 27 25 31 31 H 1.48503 * 109.47281 * 299.99688 * 29 27 25 32 32 H 1.48493 * 109.47246 * 60.00165 * 29 27 25 33 33 H 1.09001 * 109.47726 * 270.02638 * 1 2 3 34 34 H 1.09002 * 109.47431 * 30.03150 * 1 2 3 35 35 H 1.09005 * 109.47153 * 150.02512 * 1 2 3 36 36 H 1.08990 * 109.47460 * 270.17811 * 7 6 4 37 37 H 1.09007 * 109.46868 * 30.18120 * 7 6 4 38 38 H 1.09002 * 109.47080 * 150.17440 * 7 6 4 39 39 H 1.09006 * 109.46985 * 149.71393 * 9 8 6 40 40 H 1.09001 * 109.47156 * 29.71717 * 9 8 6 41 41 H 1.09002 * 109.46981 * 52.39432 * 12 10 9 42 42 H 1.09000 * 109.47021 * 172.39581 * 12 10 9 43 43 H 1.09002 * 109.46768 * 292.39678 * 12 10 9 44 44 H 1.09003 * 109.37919 * 13.37339 * 16 15 13 45 45 H 1.09001 * 110.63330 * 252.31752 * 16 15 13 46 46 H 1.08999 * 110.36485 * 208.14402 * 19 17 16 47 47 H 1.09008 * 110.36093 * 330.45343 * 19 17 16 48 48 H 1.09006 * 110.36317 * 118.84712 * 20 19 17 49 49 H 1.09003 * 110.36882 * 241.04785 * 20 19 17 50 50 H 1.08994 * 109.75014 * 107.61298 * 23 15 13 51 51 H 1.09000 * 109.78990 * 346.90122 * 23 15 13 52 52 H 0.96999 * 120.00808 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 1 4.3907 1.2079 0.0004 6 6 3.6141 -0.7154 0.0064 7 6 4.8350 -1.5989 0.0142 8 6 2.3271 -1.1330 0.0006 9 6 1.8599 -2.5658 0.0013 10 6 1.7025 -3.0516 -1.4409 11 1 1.0371 -2.3778 -1.9806 12 6 3.0712 -3.0726 -2.1243 13 6 1.1191 -4.4412 -1.4421 14 8 1.3843 -5.2109 -0.5432 15 7 0.3027 -4.8284 -2.4420 16 6 0.0437 -3.9437 -3.5951 17 6 0.2106 -4.7865 -4.8717 18 1 0.0805 -4.1916 -5.7757 19 6 1.5919 -5.4778 -4.8219 20 6 1.3379 -6.8173 -4.1000 21 6 -0.1771 -6.8108 -3.7745 22 1 -0.6123 -7.8093 -3.8149 23 6 -0.3645 -6.1395 -2.4025 24 7 -0.7624 -5.9029 -4.7907 25 6 -1.9312 -6.0567 -5.4873 26 1 -2.1095 -5.4732 -6.3786 27 6 -2.8870 -6.9623 -5.0480 28 7 -2.7509 -7.5464 -3.8765 29 14 -4.3665 -7.3522 -6.1197 30 1 -5.2313 -8.3422 -5.4285 31 1 -5.1387 -6.1085 -6.3691 32 1 -3.9056 -7.9166 -7.4136 33 1 -0.3634 0.0005 1.0276 34 1 -0.3634 0.8897 -0.5143 35 1 -0.3634 -0.8902 -0.5135 36 1 5.1345 -1.8138 -1.0115 37 1 5.6485 -1.0900 0.5313 38 1 4.6049 -2.5320 0.5286 39 1 0.9008 -2.6349 0.5148 40 1 2.5931 -3.1868 0.5159 41 1 3.7744 -3.6373 -1.5121 42 1 2.9815 -3.5440 -3.1030 43 1 3.4328 -2.0514 -2.2446 44 1 0.7670 -3.1282 -3.5949 45 1 -0.9677 -3.5399 -3.5499 46 1 1.9639 -5.6552 -5.8310 47 1 2.2997 -4.8707 -4.2572 48 1 1.5850 -7.6535 -4.7541 49 1 1.9222 -6.8699 -3.1813 50 1 -1.4271 -6.0061 -2.1998 51 1 0.0839 -6.7584 -1.6253 52 1 -3.4186 -8.1795 -3.5696 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029590219.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:50 Heat of formation + Delta-G solvation = 42.182678 kcal Electronic energy + Delta-G solvation = -32500.917698 eV Core-core repulsion = 28501.618759 eV Total energy + Delta-G solvation = -3999.298940 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.39243 -41.52946 -39.44895 -36.11084 -35.31891 -34.32654 -34.10493 -32.47045 -31.70564 -30.99715 -29.43884 -28.50035 -27.84859 -26.58397 -25.71562 -25.43061 -23.61848 -21.20699 -21.16647 -21.02130 -20.25008 -19.69735 -18.60118 -18.09464 -17.79811 -16.81663 -16.68452 -16.55250 -15.94397 -15.73548 -15.41250 -15.00938 -14.68040 -14.58358 -14.56249 -14.45609 -14.17448 -13.95556 -13.77385 -13.52221 -13.44052 -13.30250 -13.18395 -13.11171 -13.04390 -12.86874 -12.73732 -12.67279 -12.63747 -12.51845 -12.10246 -11.98983 -11.82268 -11.76622 -11.46161 -11.37184 -11.33524 -11.09025 -10.72799 -10.43034 -10.14495 -9.63755 -9.25680 -8.64670 -7.82659 -5.18693 0.94188 1.50520 1.51909 1.57929 1.67988 1.84794 2.02269 2.24840 2.53563 3.37095 3.51041 3.61654 3.78191 3.82202 4.01003 4.12747 4.15932 4.18379 4.27513 4.28258 4.35598 4.39598 4.49156 4.53570 4.59342 4.70024 4.71774 4.76598 4.78298 4.80346 4.89430 4.93235 4.98851 5.03320 5.04716 5.10007 5.13618 5.15204 5.18453 5.20971 5.27209 5.34533 5.37374 5.45338 5.47477 5.57696 5.62576 5.77020 5.89622 6.26390 6.50297 6.72558 6.79030 7.08931 7.35937 7.76116 8.55935 9.28941 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017912 B = 0.002937 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.820483 B = 9532.355270 C =10073.895870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.074 3.926 3 N -0.329 5.329 4 N -0.471 5.471 5 H 0.449 0.551 6 C 0.106 3.894 7 C -0.098 4.098 8 C -0.246 4.246 9 C -0.011 4.011 10 C -0.092 4.092 11 H 0.095 0.905 12 C -0.134 4.134 13 C 0.511 3.489 14 O -0.593 6.593 15 N -0.594 5.594 16 C 0.101 3.899 17 C 0.127 3.873 18 H 0.091 0.909 19 C -0.111 4.111 20 C -0.127 4.127 21 C 0.167 3.833 22 H 0.073 0.927 23 C 0.128 3.872 24 N -0.605 5.605 25 C -0.232 4.232 26 H 0.081 0.919 27 C -0.055 4.055 28 N -0.937 5.937 29 Si 0.970 3.030 30 H -0.301 1.301 31 H -0.278 1.278 32 H -0.281 1.281 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.052 0.948 49 H 0.054 0.946 50 H 0.038 0.962 51 H 0.054 0.946 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.253 14.984 4.807 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 N -0.153 5.153 4 N -0.181 5.181 5 H 0.295 0.705 6 C -0.023 4.023 7 C -0.157 4.157 8 C -0.257 4.257 9 C -0.050 4.050 10 C -0.114 4.114 11 H 0.113 0.887 12 C -0.192 4.192 13 C 0.301 3.699 14 O -0.475 6.475 15 N -0.325 5.325 16 C -0.024 4.024 17 C 0.019 3.981 18 H 0.109 0.891 19 C -0.150 4.150 20 C -0.166 4.166 21 C 0.060 3.940 22 H 0.091 0.909 23 C 0.004 3.996 24 N -0.326 5.326 25 C -0.361 4.361 26 H 0.098 0.902 27 C -0.250 4.250 28 N -0.585 5.585 29 Si 0.799 3.201 30 H -0.227 1.227 31 H -0.204 1.204 32 H -0.208 1.208 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.127 0.873 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.057 0.943 51 H 0.073 0.927 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.163 15.739 5.220 23.157 hybrid contribution -1.203 -1.238 -0.192 1.737 sum 14.960 14.501 5.029 21.433 Atomic orbital electron populations 1.20261 0.86141 1.03703 1.03548 1.22523 0.97670 0.90422 0.98552 1.77218 0.87665 1.22954 1.27452 1.46153 1.07022 1.05160 1.59744 0.70474 1.21235 0.97367 0.84918 0.98785 1.20751 0.91974 0.98060 1.04874 1.19623 0.91966 0.95349 1.18794 1.19523 1.01239 0.90364 0.93869 1.21284 0.99668 0.91153 0.99252 0.88694 1.21864 0.93806 1.03267 1.00228 1.21284 0.77939 0.90296 0.80353 1.90610 1.62230 1.56523 1.38111 1.48342 1.44952 1.17695 1.21490 1.22622 1.00974 0.92727 0.86036 1.22232 0.89888 0.90077 0.95858 0.89060 1.22443 0.96590 0.95755 1.00176 1.22560 0.96659 0.98148 0.99226 1.21730 0.90336 0.94863 0.87111 0.90909 1.21861 0.94979 0.83921 0.98885 1.45342 1.21358 1.20007 1.45927 1.19261 0.92516 1.20383 1.03986 0.90170 1.25555 1.00379 1.01525 0.97501 1.70036 1.36517 1.32440 1.19470 0.85291 0.79464 0.77333 0.77972 1.22729 1.20433 1.20782 0.89902 0.90359 0.90292 0.88362 0.89035 0.89488 0.92584 0.90755 0.91505 0.92050 0.90038 0.87336 0.93177 0.91323 0.90214 0.92937 0.92717 0.94336 0.92714 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 10.12 71.23 0.72 -0.79 16 2 C 0.07 1.68 7.22 43.10 0.31 1.99 16 3 N -0.33 -7.59 12.70 -47.39 -0.60 -8.19 16 4 N -0.47 -7.80 7.36 -48.00 -0.35 -8.16 16 5 H 0.45 4.42 8.96 -213.33 -1.91 2.51 16 6 C 0.11 1.74 6.34 41.40 0.26 2.00 16 7 C -0.10 -0.96 8.90 71.24 0.63 -0.32 16 8 C -0.25 -5.15 4.82 -20.14 -0.10 -5.25 16 9 C -0.01 -0.26 4.18 29.85 0.12 -0.13 16 10 C -0.09 -2.20 1.89 -11.54 -0.02 -2.22 16 11 H 0.09 2.15 6.41 -2.39 -0.02 2.13 16 12 C -0.13 -2.48 7.39 71.98 0.53 -1.95 16 13 C 0.51 17.24 6.72 87.66 0.59 17.83 16 14 O -0.59 -24.22 15.79 -3.03 -0.05 -24.27 16 15 N -0.59 -21.71 2.24 -813.81 -1.82 -23.53 16 16 C 0.10 3.24 5.62 86.46 0.49 3.72 16 17 C 0.13 4.48 4.27 45.46 0.19 4.67 16 18 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 19 C -0.11 -3.45 6.18 31.55 0.20 -3.26 16 20 C -0.13 -4.75 6.21 31.70 0.20 -4.56 16 21 C 0.17 7.72 3.12 45.61 0.14 7.87 16 22 H 0.07 3.96 6.47 -2.39 -0.02 3.94 16 23 C 0.13 5.81 5.82 86.55 0.50 6.32 16 24 N -0.60 -28.22 2.80 -635.94 -1.78 -30.00 16 25 C -0.23 -12.08 10.36 84.03 0.87 -11.21 16 26 H 0.08 3.98 7.84 -2.91 -0.02 3.96 16 27 C -0.06 -2.97 5.42 84.86 0.46 -2.51 16 28 N -0.94 -53.57 10.36 21.65 0.22 -53.35 16 29 Si 0.97 44.19 29.56 68.60 2.03 46.22 16 30 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 31 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 32 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.52 7.92 -2.38 -0.02 1.50 16 36 H 0.10 0.74 6.89 -2.39 -0.02 0.72 16 37 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.09 0.97 7.14 -2.39 -0.02 0.95 16 39 H 0.06 1.46 7.92 -2.38 -0.02 1.44 16 40 H 0.07 1.78 7.01 -2.39 -0.02 1.76 16 41 H 0.07 1.20 7.67 -2.39 -0.02 1.18 16 42 H 0.06 1.15 5.94 -2.39 -0.01 1.13 16 43 H 0.08 1.23 6.15 -2.39 -0.01 1.21 16 44 H 0.11 2.60 5.52 -2.39 -0.01 2.58 16 45 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.08 2.09 5.92 -2.38 -0.01 2.07 16 48 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 49 H 0.05 2.02 7.85 -2.39 -0.02 2.00 16 50 H 0.04 2.04 7.71 -2.39 -0.02 2.02 16 51 H 0.05 2.57 7.09 -2.39 -0.02 2.55 16 52 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -69.84 392.40 2.78 -67.06 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.97 Total: 22.01 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 6.10 Total: 12.21 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -4.33 Total: -123.23 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.84 2.78 -67.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029590219.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.243 kcal (2) G-P(sol) polarization free energy of solvation -69.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds