Wall clock time and date at job start Wed Apr 1 2020 03:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30842 * 125.90104 * 2 1 4 4 N 1.40088 * 108.20445 * 180.02562 * 3 2 1 5 5 H 0.97003 * 126.03489 * 179.97438 * 4 3 2 6 6 C 1.34950 * 107.92534 * 359.75215 * 4 3 2 7 7 C 1.50697 * 126.12600 * 180.24172 * 6 4 3 8 8 C 1.35315 * 107.74547 * 0.39307 * 6 4 3 9 9 C 1.50698 * 126.04007 * 179.87558 * 8 6 4 10 10 C 1.53002 * 109.47087 * 269.71548 * 9 8 6 11 11 H 1.09000 * 109.46977 * 54.99451 * 10 9 8 12 12 C 1.53006 * 109.46943 * 294.99876 * 10 9 8 13 13 C 1.50696 * 109.47236 * 174.99694 * 10 9 8 14 14 O 1.21283 * 120.00046 * 20.82892 * 13 10 9 15 15 N 1.34779 * 119.99767 * 200.82848 * 13 10 9 16 16 C 1.47619 * 120.90554 * 4.34928 * 15 13 10 17 17 C 1.53886 * 107.50002 * 132.49206 * 16 15 13 18 18 H 1.09002 * 112.09027 * 182.66676 * 17 16 15 19 19 C 1.54548 * 108.37054 * 307.00479 * 17 16 15 20 20 C 1.54283 * 104.84658 * 89.29884 * 19 17 16 21 21 C 1.54967 * 104.80810 * 359.81551 * 20 19 17 22 22 H 1.09001 * 112.26014 * 146.60703 * 21 20 19 23 23 C 1.47169 * 120.70727 * 185.03939 * 15 13 10 24 24 N 1.48307 * 107.20736 * 59.11798 * 17 16 15 25 25 C 1.36935 * 128.07507 * 106.09667 * 24 17 16 26 26 H 1.07994 * 120.00602 * 19.48853 * 25 24 17 27 27 C 1.38817 * 119.99760 * 199.47843 * 25 24 17 28 28 N 1.31619 * 119.99900 * 355.52544 * 27 25 24 29 29 Si 1.86794 * 119.99954 * 175.51488 * 27 25 24 30 30 H 1.48510 * 109.47369 * 270.00329 * 29 27 25 31 31 H 1.48497 * 109.47243 * 30.00546 * 29 27 25 32 32 H 1.48501 * 109.47378 * 150.00725 * 29 27 25 33 33 H 1.09002 * 109.47376 * 269.98074 * 1 2 3 34 34 H 1.09002 * 109.46668 * 29.97604 * 1 2 3 35 35 H 1.08997 * 109.47571 * 149.97953 * 1 2 3 36 36 H 1.08998 * 109.47151 * 270.17860 * 7 6 4 37 37 H 1.09005 * 109.46918 * 30.18008 * 7 6 4 38 38 H 1.08999 * 109.47093 * 150.17163 * 7 6 4 39 39 H 1.08994 * 109.47556 * 149.71405 * 9 8 6 40 40 H 1.09001 * 109.47221 * 29.71309 * 9 8 6 41 41 H 1.08994 * 109.46867 * 302.72422 * 12 10 9 42 42 H 1.08994 * 109.47127 * 62.72073 * 12 10 9 43 43 H 1.08993 * 109.46878 * 182.72343 * 12 10 9 44 44 H 1.08999 * 109.37811 * 13.38167 * 16 15 13 45 45 H 1.08999 * 110.63834 * 252.31802 * 16 15 13 46 46 H 1.08997 * 110.36566 * 208.14095 * 19 17 16 47 47 H 1.08998 * 110.36309 * 330.46214 * 19 17 16 48 48 H 1.08995 * 110.36350 * 118.84421 * 20 19 17 49 49 H 1.08995 * 110.36779 * 241.05087 * 20 19 17 50 50 H 1.08993 * 109.75258 * 107.60929 * 23 15 13 51 51 H 1.09003 * 109.74686 * 346.86933 * 23 15 13 52 52 H 0.97000 * 119.99712 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6340 -0.0006 5 1 4.3909 1.2079 -0.0011 6 6 3.6142 -0.7155 0.0046 7 6 4.8349 -1.5990 0.0111 8 6 2.3271 -1.1331 -0.0005 9 6 1.8598 -2.5657 0.0000 10 6 1.7014 -3.0509 -1.4424 11 1 2.6363 -2.8988 -1.9817 12 6 0.5838 -2.2608 -2.1264 13 6 1.3534 -4.5172 -1.4439 14 8 0.8779 -5.0286 -0.4523 15 7 1.5708 -5.2602 -2.5471 16 6 2.2355 -4.6823 -3.7317 17 6 3.3251 -5.6722 -4.1799 18 1 3.8976 -5.2955 -5.0276 19 6 4.2243 -5.9902 -2.9638 20 6 3.5547 -7.2021 -2.2832 21 6 2.3060 -7.5033 -3.1502 22 1 2.0762 -8.5682 -3.1874 23 6 1.1364 -6.6652 -2.6045 24 7 2.6514 -6.9576 -4.4853 25 6 2.4013 -7.5089 -5.7136 26 1 2.9606 -7.1804 -6.5770 27 6 1.4289 -8.4904 -5.8488 28 7 0.8092 -8.9538 -4.7841 29 14 0.9999 -9.1531 -7.5417 30 1 -0.0939 -8.3385 -8.1296 31 1 2.1961 -9.0824 -8.4187 32 1 0.5561 -10.5653 -7.4226 33 1 -0.3634 -0.0003 1.0277 34 1 -0.3633 0.8902 -0.5135 35 1 -0.3634 -0.8897 -0.5141 36 1 5.1338 -1.8134 -1.0150 37 1 5.6488 -1.0904 0.5279 38 1 4.6052 -2.5323 0.5253 39 1 0.9012 -2.6352 0.5140 40 1 2.5934 -3.1871 0.5137 41 1 -0.3404 -2.3740 -1.5597 42 1 0.8574 -1.2066 -2.1685 43 1 0.4382 -2.6391 -3.1381 44 1 2.6916 -3.7298 -3.4617 45 1 1.5191 -4.5325 -4.5395 46 1 5.2307 -6.2484 -3.2933 47 1 4.2539 -5.1407 -2.2815 48 1 4.2318 -8.0562 -2.2781 49 1 3.2568 -6.9491 -1.2657 50 1 0.2761 -6.7580 -3.2672 51 1 0.8713 -7.0098 -1.6050 52 1 0.1295 -9.6394 -4.8786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029590220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:55 Heat of formation + Delta-G solvation = 61.566895 kcal Electronic energy + Delta-G solvation = -32533.390276 eV Core-core repulsion = 28534.931899 eV Total energy + Delta-G solvation = -3998.458377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.55988 -40.04663 -37.96543 -35.05232 -33.69698 -33.48794 -32.37218 -31.35706 -30.38548 -29.26347 -28.78724 -27.40786 -26.29081 -25.84585 -24.10343 -23.78189 -22.40402 -20.26033 -19.73107 -19.57031 -19.04738 -18.28261 -17.60385 -16.95730 -16.05531 -15.64283 -15.42926 -14.85984 -14.66105 -14.50645 -13.97653 -13.85876 -13.65007 -13.49847 -13.39367 -13.10127 -12.99407 -12.80432 -12.62365 -12.57763 -12.46671 -12.32384 -11.92521 -11.82724 -11.78340 -11.55941 -11.49660 -11.11588 -11.02231 -10.94294 -10.86184 -10.64967 -10.50550 -10.30251 -10.05412 -9.80537 -9.73568 -9.52609 -9.34591 -9.07146 -8.74491 -8.41472 -8.01141 -6.79894 -5.84392 -3.24410 1.72052 2.58290 2.71475 3.19442 3.34300 3.40069 3.41781 3.68732 4.39656 4.48262 4.55137 4.85264 4.89206 4.97292 5.12805 5.14184 5.23779 5.27539 5.32167 5.43596 5.49370 5.54617 5.57797 5.62092 5.64057 5.69372 5.75880 5.78314 5.87916 5.89102 5.96007 5.96831 5.98910 6.13532 6.23562 6.27553 6.34992 6.38586 6.44039 6.54921 6.60550 6.67144 6.73633 6.81491 6.91273 7.02573 7.15424 7.31617 7.55037 7.58488 7.72206 8.15593 8.18495 8.79067 9.05513 9.66503 10.44779 11.26231 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.002907 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.257168 B = 9631.205293 C = 9938.152425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.088 3.912 3 N -0.301 5.301 4 N -0.480 5.480 5 H 0.435 0.565 6 C 0.089 3.911 7 C -0.096 4.096 8 C -0.225 4.225 9 C -0.020 4.020 10 C -0.103 4.103 11 H 0.088 0.912 12 C -0.141 4.141 13 C 0.511 3.489 14 O -0.560 6.560 15 N -0.591 5.591 16 C 0.096 3.904 17 C 0.132 3.868 18 H 0.075 0.925 19 C -0.121 4.121 20 C -0.137 4.137 21 C 0.164 3.836 22 H 0.126 0.874 23 C 0.112 3.888 24 N -0.585 5.585 25 C -0.228 4.228 26 H 0.075 0.925 27 C 0.001 3.999 28 N -0.911 5.911 29 Si 0.910 3.090 30 H -0.288 1.288 31 H -0.281 1.281 32 H -0.291 1.291 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.052 0.948 50 H 0.072 0.928 51 H 0.069 0.931 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.824 15.808 8.479 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 N -0.124 5.124 4 N -0.188 5.188 5 H 0.279 0.721 6 C -0.039 4.039 7 C -0.154 4.154 8 C -0.236 4.236 9 C -0.059 4.059 10 C -0.125 4.125 11 H 0.106 0.894 12 C -0.198 4.198 13 C 0.298 3.702 14 O -0.440 6.440 15 N -0.322 5.322 16 C -0.029 4.029 17 C 0.024 3.976 18 H 0.093 0.907 19 C -0.160 4.160 20 C -0.176 4.176 21 C 0.057 3.943 22 H 0.143 0.857 23 C -0.011 4.011 24 N -0.306 5.306 25 C -0.357 4.357 26 H 0.093 0.907 27 C -0.197 4.197 28 N -0.557 5.557 29 Si 0.741 3.259 30 H -0.215 1.215 31 H -0.207 1.207 32 H -0.217 1.217 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.091 0.909 51 H 0.087 0.913 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.451 16.567 8.820 19.545 hybrid contribution 0.220 -0.728 -1.008 1.263 sum 5.671 15.839 7.812 18.549 Atomic orbital electron populations 1.20461 0.86890 1.03953 1.03227 1.22209 0.96867 0.90158 0.98580 1.77263 0.86503 1.22401 1.26248 1.46114 1.07218 1.04807 1.60684 0.72117 1.20899 0.97042 0.84832 1.01158 1.20503 0.92669 0.98550 1.03685 1.19733 0.91023 0.96377 1.16502 1.19674 1.02225 0.89278 0.94715 1.21279 1.00706 0.92332 0.98135 0.89420 1.21858 0.97580 0.99902 1.00453 1.20491 0.78619 0.88208 0.82865 1.90631 1.46485 1.73648 1.33198 1.48328 1.57232 1.12916 1.13762 1.22631 0.96472 0.96177 0.87665 1.21961 0.92089 0.88465 0.95115 0.90699 1.22448 0.98413 0.97806 0.97351 1.22714 0.99346 0.96986 0.98537 1.22123 0.89257 0.99878 0.83033 0.85686 1.22385 0.99413 0.78692 1.00640 1.45138 1.67296 1.16390 1.01789 1.18967 1.14344 1.17756 0.84590 0.90698 1.24938 0.97286 1.00148 0.97292 1.69766 1.28002 1.31132 1.26789 0.86157 0.78326 0.77927 0.83539 1.21516 1.20674 1.21708 0.90580 0.91020 0.89344 0.89898 0.91243 0.89277 0.90293 0.91142 0.91950 0.91539 0.92228 0.91602 0.91627 0.92841 0.93129 0.93002 0.92909 0.90929 0.91278 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.63 36.00 0.35 -0.48 16 2 C 0.09 1.04 6.29 -82.40 -0.52 0.52 16 3 N -0.30 -3.70 12.70 33.67 0.43 -3.27 16 4 N -0.48 -4.68 7.36 33.48 0.25 -4.43 16 5 H 0.44 2.86 8.96 -182.60 -1.64 1.22 16 6 C 0.09 0.88 7.21 -82.26 -0.59 0.29 16 7 C -0.10 -0.68 10.22 36.00 0.37 -0.32 16 8 C -0.23 -2.58 4.78 -105.05 -0.50 -3.08 16 9 C -0.02 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.10 -1.35 1.93 -91.77 -0.18 -1.52 16 11 H 0.09 1.07 6.23 -51.93 -0.32 0.75 16 12 C -0.14 -1.69 7.53 37.16 0.28 -1.41 16 13 C 0.51 8.81 6.85 -10.99 -0.08 8.74 16 14 O -0.56 -11.42 15.60 5.55 0.09 -11.33 16 15 N -0.59 -10.83 2.24 -171.16 -0.38 -11.21 16 16 C 0.10 1.61 5.36 -2.97 -0.02 1.59 16 17 C 0.13 2.45 4.27 -65.66 -0.28 2.17 16 18 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 19 C -0.12 -2.04 6.18 -25.25 -0.16 -2.19 16 20 C -0.14 -2.60 6.21 -25.02 -0.16 -2.76 16 21 C 0.16 3.68 3.18 -65.43 -0.21 3.47 16 22 H 0.13 3.21 6.16 -51.93 -0.32 2.89 16 23 C 0.11 2.42 5.87 -3.21 -0.02 2.40 16 24 N -0.59 -13.53 2.81 -152.34 -0.43 -13.96 16 25 C -0.23 -5.86 10.37 -15.06 -0.16 -6.02 16 26 H 0.08 1.88 7.83 -52.49 -0.41 1.46 16 27 C 0.00 0.02 5.49 -17.43 -0.10 -0.07 16 28 N -0.91 -24.71 10.43 55.49 0.58 -24.14 16 29 Si 0.91 20.94 29.56 -169.99 -5.02 15.91 16 30 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 31 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 32 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.82 4.67 -51.93 -0.24 0.58 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.67 7.14 -51.93 -0.37 0.30 16 39 H 0.08 1.04 7.83 -51.93 -0.41 0.63 16 40 H 0.07 0.89 7.14 -51.93 -0.37 0.51 16 41 H 0.06 0.74 6.82 -51.93 -0.35 0.39 16 42 H 0.07 0.73 6.08 -51.93 -0.32 0.42 16 43 H 0.06 0.75 7.66 -51.93 -0.40 0.35 16 44 H 0.07 0.89 5.58 -51.93 -0.29 0.60 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.05 0.76 7.86 -51.93 -0.41 0.35 16 48 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.05 0.99 7.85 -51.93 -0.41 0.59 16 50 H 0.07 1.78 8.02 -51.93 -0.42 1.37 16 51 H 0.07 1.53 7.08 -51.93 -0.37 1.16 16 52 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -30.79 393.78 -10.19 -40.98 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -9.56 Total: 4.55 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.07 Total: 0.96 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.44 Total: -57.01 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.79 -10.19 -40.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029590220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.549 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds