Wall clock time and date at job start Wed Apr 1 2020 03:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30842 * 125.90104 * 2 1 4 4 N 1.40088 * 108.20445 * 180.02562 * 3 2 1 5 5 H 0.97003 * 126.03489 * 179.97438 * 4 3 2 6 6 C 1.34950 * 107.92534 * 359.75215 * 4 3 2 7 7 C 1.50697 * 126.12600 * 180.24172 * 6 4 3 8 8 C 1.35315 * 107.74547 * 0.39307 * 6 4 3 9 9 C 1.50698 * 126.04007 * 179.87558 * 8 6 4 10 10 C 1.53002 * 109.47087 * 269.71548 * 9 8 6 11 11 H 1.09000 * 109.46977 * 54.99451 * 10 9 8 12 12 C 1.53006 * 109.46943 * 294.99876 * 10 9 8 13 13 C 1.50696 * 109.47236 * 174.99694 * 10 9 8 14 14 O 1.21283 * 120.00046 * 20.82892 * 13 10 9 15 15 N 1.34779 * 119.99767 * 200.82848 * 13 10 9 16 16 C 1.47619 * 120.90554 * 4.34928 * 15 13 10 17 17 C 1.53886 * 107.50002 * 132.49206 * 16 15 13 18 18 H 1.09002 * 112.09027 * 182.66676 * 17 16 15 19 19 C 1.54548 * 108.37054 * 307.00479 * 17 16 15 20 20 C 1.54283 * 104.84658 * 89.29884 * 19 17 16 21 21 C 1.54967 * 104.80810 * 359.81551 * 20 19 17 22 22 H 1.09001 * 112.26014 * 146.60703 * 21 20 19 23 23 C 1.47169 * 120.70727 * 185.03939 * 15 13 10 24 24 N 1.48307 * 107.20736 * 59.11798 * 17 16 15 25 25 C 1.36935 * 128.07507 * 106.09667 * 24 17 16 26 26 H 1.07994 * 120.00602 * 19.48853 * 25 24 17 27 27 C 1.38817 * 119.99760 * 199.47843 * 25 24 17 28 28 N 1.31619 * 119.99900 * 355.52544 * 27 25 24 29 29 Si 1.86794 * 119.99954 * 175.51488 * 27 25 24 30 30 H 1.48510 * 109.47369 * 270.00329 * 29 27 25 31 31 H 1.48497 * 109.47243 * 30.00546 * 29 27 25 32 32 H 1.48501 * 109.47378 * 150.00725 * 29 27 25 33 33 H 1.09002 * 109.47376 * 269.98074 * 1 2 3 34 34 H 1.09002 * 109.46668 * 29.97604 * 1 2 3 35 35 H 1.08997 * 109.47571 * 149.97953 * 1 2 3 36 36 H 1.08998 * 109.47151 * 270.17860 * 7 6 4 37 37 H 1.09005 * 109.46918 * 30.18008 * 7 6 4 38 38 H 1.08999 * 109.47093 * 150.17163 * 7 6 4 39 39 H 1.08994 * 109.47556 * 149.71405 * 9 8 6 40 40 H 1.09001 * 109.47221 * 29.71309 * 9 8 6 41 41 H 1.08994 * 109.46867 * 302.72422 * 12 10 9 42 42 H 1.08994 * 109.47127 * 62.72073 * 12 10 9 43 43 H 1.08993 * 109.46878 * 182.72343 * 12 10 9 44 44 H 1.08999 * 109.37811 * 13.38167 * 16 15 13 45 45 H 1.08999 * 110.63834 * 252.31802 * 16 15 13 46 46 H 1.08997 * 110.36566 * 208.14095 * 19 17 16 47 47 H 1.08998 * 110.36309 * 330.46214 * 19 17 16 48 48 H 1.08995 * 110.36350 * 118.84421 * 20 19 17 49 49 H 1.08995 * 110.36779 * 241.05087 * 20 19 17 50 50 H 1.08993 * 109.75258 * 107.60929 * 23 15 13 51 51 H 1.09003 * 109.74686 * 346.86933 * 23 15 13 52 52 H 0.97000 * 119.99712 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6340 -0.0006 5 1 4.3909 1.2079 -0.0011 6 6 3.6142 -0.7155 0.0046 7 6 4.8349 -1.5990 0.0111 8 6 2.3271 -1.1331 -0.0005 9 6 1.8598 -2.5657 0.0000 10 6 1.7014 -3.0509 -1.4424 11 1 2.6363 -2.8988 -1.9817 12 6 0.5838 -2.2608 -2.1264 13 6 1.3534 -4.5172 -1.4439 14 8 0.8779 -5.0286 -0.4523 15 7 1.5708 -5.2602 -2.5471 16 6 2.2355 -4.6823 -3.7317 17 6 3.3251 -5.6722 -4.1799 18 1 3.8976 -5.2955 -5.0276 19 6 4.2243 -5.9902 -2.9638 20 6 3.5547 -7.2021 -2.2832 21 6 2.3060 -7.5033 -3.1502 22 1 2.0762 -8.5682 -3.1874 23 6 1.1364 -6.6652 -2.6045 24 7 2.6514 -6.9576 -4.4853 25 6 2.4013 -7.5089 -5.7136 26 1 2.9606 -7.1804 -6.5770 27 6 1.4289 -8.4904 -5.8488 28 7 0.8092 -8.9538 -4.7841 29 14 0.9999 -9.1531 -7.5417 30 1 -0.0939 -8.3385 -8.1296 31 1 2.1961 -9.0824 -8.4187 32 1 0.5561 -10.5653 -7.4226 33 1 -0.3634 -0.0003 1.0277 34 1 -0.3633 0.8902 -0.5135 35 1 -0.3634 -0.8897 -0.5141 36 1 5.1338 -1.8134 -1.0150 37 1 5.6488 -1.0904 0.5279 38 1 4.6052 -2.5323 0.5253 39 1 0.9012 -2.6352 0.5140 40 1 2.5934 -3.1871 0.5137 41 1 -0.3404 -2.3740 -1.5597 42 1 0.8574 -1.2066 -2.1685 43 1 0.4382 -2.6391 -3.1381 44 1 2.6916 -3.7298 -3.4617 45 1 1.5191 -4.5325 -4.5395 46 1 5.2307 -6.2484 -3.2933 47 1 4.2539 -5.1407 -2.2815 48 1 4.2318 -8.0562 -2.2781 49 1 3.2568 -6.9491 -1.2657 50 1 0.2761 -6.7580 -3.2672 51 1 0.8713 -7.0098 -1.6050 52 1 0.1295 -9.6394 -4.8786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029590220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:54 Heat of formation + Delta-G solvation = 44.197279 kcal Electronic energy + Delta-G solvation = -32534.143479 eV Core-core repulsion = 28534.931899 eV Total energy + Delta-G solvation = -3999.211580 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.37420 -41.50930 -39.45590 -36.15190 -35.32821 -34.23792 -34.10413 -32.46496 -31.73781 -31.00483 -29.56231 -28.22162 -27.78661 -26.76263 -25.68729 -25.39946 -23.67850 -21.20401 -21.13327 -20.93919 -20.24181 -19.63745 -18.72923 -18.16598 -17.57155 -17.00856 -16.66947 -16.48561 -15.95295 -15.59914 -15.52965 -14.95174 -14.62235 -14.60895 -14.58597 -14.43596 -14.21801 -14.00423 -13.67718 -13.52087 -13.39853 -13.23627 -13.20809 -13.13160 -12.98690 -12.87538 -12.76284 -12.75821 -12.60254 -12.54033 -12.05010 -11.94733 -11.78829 -11.74336 -11.49375 -11.36475 -11.33158 -11.07533 -10.71526 -10.44359 -10.12225 -9.64585 -9.23962 -8.61609 -7.81109 -5.21170 0.95877 1.49727 1.51010 1.58516 1.72740 1.81346 2.03631 2.25708 2.52711 3.36416 3.53058 3.61389 3.80373 3.86078 3.98948 4.14433 4.15116 4.21147 4.27837 4.30828 4.34135 4.40680 4.46294 4.54448 4.61930 4.73859 4.76169 4.77665 4.78799 4.83489 4.91725 4.92106 4.96471 5.04457 5.06509 5.11210 5.14339 5.15146 5.19158 5.22611 5.27589 5.36064 5.39975 5.45162 5.47156 5.59616 5.63078 5.79666 5.91812 6.31152 6.51323 6.72893 6.80922 7.10275 7.36232 7.76522 8.56671 9.28044 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.002907 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.257168 B = 9631.205293 C = 9938.152425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.080 3.920 3 N -0.330 5.330 4 N -0.472 5.472 5 H 0.448 0.552 6 C 0.101 3.899 7 C -0.097 4.097 8 C -0.247 4.247 9 C -0.009 4.009 10 C -0.090 4.090 11 H 0.108 0.892 12 C -0.136 4.136 13 C 0.511 3.489 14 O -0.593 6.593 15 N -0.592 5.592 16 C 0.102 3.898 17 C 0.126 3.874 18 H 0.092 0.908 19 C -0.109 4.109 20 C -0.128 4.128 21 C 0.161 3.839 22 H 0.084 0.916 23 C 0.129 3.871 24 N -0.606 5.606 25 C -0.230 4.230 26 H 0.081 0.919 27 C -0.054 4.054 28 N -0.937 5.937 29 Si 0.968 3.032 30 H -0.291 1.291 31 H -0.269 1.269 32 H -0.301 1.301 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.111 0.889 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.050 0.950 49 H 0.053 0.947 50 H 0.032 0.968 51 H 0.055 0.945 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.263 18.401 8.307 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 N -0.155 5.155 4 N -0.182 5.182 5 H 0.295 0.705 6 C -0.028 4.028 7 C -0.155 4.155 8 C -0.258 4.258 9 C -0.048 4.048 10 C -0.111 4.111 11 H 0.126 0.874 12 C -0.193 4.193 13 C 0.300 3.700 14 O -0.475 6.475 15 N -0.323 5.323 16 C -0.022 4.022 17 C 0.019 3.981 18 H 0.110 0.890 19 C -0.148 4.148 20 C -0.167 4.167 21 C 0.054 3.946 22 H 0.101 0.899 23 C 0.004 3.996 24 N -0.328 5.328 25 C -0.359 4.359 26 H 0.099 0.901 27 C -0.248 4.248 28 N -0.585 5.585 29 Si 0.798 3.202 30 H -0.218 1.218 31 H -0.194 1.194 32 H -0.228 1.228 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.128 0.872 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.051 0.949 51 H 0.073 0.927 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.930 19.224 8.644 22.520 hybrid contribution -0.504 -1.503 -0.894 1.820 sum 7.426 17.721 7.749 20.718 Atomic orbital electron populations 1.20507 0.86109 1.04234 1.03747 1.22489 0.97648 0.90211 0.98272 1.77222 0.87629 1.23075 1.27529 1.46153 1.07056 1.05126 1.59848 0.70547 1.21301 0.97519 0.85039 0.98982 1.20639 0.92004 0.98026 1.04820 1.19662 0.91833 0.95580 1.18715 1.19501 1.01542 0.90026 0.93757 1.21270 1.01770 0.88700 0.99335 0.87374 1.21839 0.97118 1.00492 0.99882 1.21272 0.77356 0.89670 0.81661 1.90621 1.47751 1.74669 1.34449 1.48327 1.57579 1.11561 1.14881 1.22644 0.95556 0.97383 0.86666 1.22257 0.92531 0.86786 0.96535 0.89018 1.22394 0.98248 0.97452 0.96679 1.22579 0.97770 0.98342 0.98036 1.21911 0.90961 0.97791 0.83985 0.89862 1.21855 0.97921 0.81204 0.98586 1.45324 1.67693 1.18614 1.01147 1.19289 1.13677 1.17168 0.85805 0.90121 1.25618 0.98000 1.01256 0.99961 1.69985 1.28566 1.31692 1.28218 0.85233 0.78082 0.76494 0.80392 1.21840 1.19425 1.22783 0.89991 0.90393 0.89327 0.88531 0.89074 0.89491 0.91716 0.91328 0.92317 0.90029 0.92666 0.87166 0.93120 0.91368 0.90229 0.93143 0.92804 0.94932 0.92658 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 9.63 71.24 0.69 -0.86 16 2 C 0.08 1.72 6.29 43.10 0.27 1.99 16 3 N -0.33 -7.43 12.70 -47.38 -0.60 -8.03 16 4 N -0.47 -7.82 7.36 -48.00 -0.35 -8.17 16 5 H 0.45 4.51 8.96 -213.32 -1.91 2.60 16 6 C 0.10 1.66 7.21 41.40 0.30 1.96 16 7 C -0.10 -0.97 10.22 71.23 0.73 -0.24 16 8 C -0.25 -5.02 4.78 -20.14 -0.10 -5.11 16 9 C -0.01 -0.21 4.04 29.85 0.12 -0.09 16 10 C -0.09 -2.10 1.93 -11.54 -0.02 -2.12 16 11 H 0.11 2.12 6.23 -2.39 -0.01 2.10 16 12 C -0.14 -2.96 7.53 71.98 0.54 -2.42 16 13 C 0.51 16.96 6.85 87.66 0.60 17.56 16 14 O -0.59 -24.14 15.60 -3.04 -0.05 -24.19 16 15 N -0.59 -21.19 2.24 -813.81 -1.82 -23.01 16 16 C 0.10 3.15 5.36 86.46 0.46 3.61 16 17 C 0.13 4.34 4.27 45.47 0.19 4.53 16 18 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 19 C -0.11 -3.29 6.18 31.56 0.20 -3.09 16 20 C -0.13 -4.76 6.21 31.70 0.20 -4.56 16 21 C 0.16 7.38 3.18 45.62 0.14 7.53 16 22 H 0.08 4.53 6.16 -2.39 -0.01 4.51 16 23 C 0.13 5.78 5.87 86.55 0.51 6.29 16 24 N -0.61 -27.94 2.81 -635.90 -1.79 -29.72 16 25 C -0.23 -11.85 10.37 84.03 0.87 -10.98 16 26 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 27 C -0.05 -2.89 5.49 84.86 0.47 -2.43 16 28 N -0.94 -53.25 10.43 21.65 0.23 -53.02 16 29 Si 0.97 43.90 29.56 68.60 2.03 45.93 16 30 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 31 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 32 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.53 4.67 -2.39 -0.01 1.52 16 36 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.09 0.97 7.14 -2.39 -0.02 0.95 16 39 H 0.06 1.64 7.83 -2.39 -0.02 1.62 16 40 H 0.07 1.57 7.14 -2.39 -0.02 1.55 16 41 H 0.06 1.33 6.82 -2.39 -0.02 1.31 16 42 H 0.08 1.57 6.08 -2.39 -0.01 1.56 16 43 H 0.05 1.26 7.66 -2.39 -0.02 1.24 16 44 H 0.11 2.46 5.58 -2.39 -0.01 2.45 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.08 1.97 7.86 -2.39 -0.02 1.96 16 48 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.05 1.97 7.85 -2.39 -0.02 1.95 16 50 H 0.03 1.70 8.02 -2.39 -0.02 1.68 16 51 H 0.05 2.57 7.08 -2.39 -0.02 2.56 16 52 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -69.42 393.78 2.84 -66.58 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.97 Total: 22.07 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 6.17 Total: 11.57 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -4.34 Total: -121.96 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -69.42 2.84 -66.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029590220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.779 kcal (2) G-P(sol) polarization free energy of solvation -69.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds