Wall clock time and date at job start Wed Apr 1 2020 04:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34852 * 125.96162 * 2 1 4 4 N 1.36321 * 106.68533 * 179.97438 * 3 2 1 5 5 C 1.35423 * 107.39900 * 0.05371 * 4 3 2 6 6 N 1.30089 * 108.62693 * 359.93617 * 5 4 3 7 7 C 1.51035 * 123.97924 * 179.91653 * 5 4 3 8 8 C 1.53397 * 108.21480 * 344.03423 * 7 5 4 9 9 H 1.08995 * 109.51097 * 288.84473 * 8 7 5 10 10 C 1.50701 * 109.51139 * 168.74790 * 8 7 5 11 11 O 1.21280 * 120.00084 * 240.09439 * 10 8 7 12 12 N 1.34771 * 119.99796 * 60.09718 * 10 8 7 13 13 C 1.46505 * 120.00022 * 179.97438 * 12 10 8 14 14 H 1.08995 * 109.32288 * 34.65630 * 13 12 10 15 15 C 1.47095 * 109.32492 * 154.12788 * 13 12 10 16 16 C 1.52571 * 114.32080 * 183.06237 * 15 13 12 17 17 C 1.50882 * 109.36100 * 274.98864 * 16 15 13 18 18 C 1.54304 * 110.22865 * 91.79986 * 17 16 15 19 19 N 1.47593 * 111.94390 * 319.70062 * 18 17 16 20 20 C 1.36938 * 118.64167 * 137.78363 * 19 18 17 21 21 H 1.08000 * 120.00033 * 207.69643 * 20 19 18 22 22 C 1.38815 * 120.00164 * 27.41147 * 20 19 18 23 23 N 1.31614 * 119.99783 * 16.09712 * 22 20 19 24 24 Si 1.86804 * 119.99905 * 196.09594 * 22 20 19 25 25 H 1.48501 * 109.47329 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46780 * 120.00267 * 24 22 20 27 27 H 1.48498 * 109.46890 * 239.99813 * 24 22 20 28 28 C 1.44574 * 122.71802 * 317.49581 * 19 18 17 29 29 C 1.53154 * 109.28034 * 48.79629 * 8 7 5 30 30 C 1.46472 * 127.77283 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47489 * 89.99228 * 1 2 3 32 32 H 1.09002 * 109.47146 * 209.99218 * 1 2 3 33 33 H 1.08998 * 109.47462 * 329.99733 * 1 2 3 34 34 H 1.07993 * 126.66028 * 359.96974 * 3 2 1 35 35 H 1.09001 * 109.71703 * 224.35853 * 7 5 4 36 36 H 1.08998 * 109.75332 * 103.73412 * 7 5 4 37 37 H 0.97006 * 120.00274 * 0.02562 * 12 10 8 38 38 H 1.09000 * 108.51744 * 304.32039 * 15 13 12 39 39 H 1.09008 * 108.51005 * 61.81591 * 15 13 12 40 40 H 1.09000 * 109.48946 * 34.95962 * 16 15 13 41 41 H 1.09004 * 109.48526 * 155.02892 * 16 15 13 42 42 H 1.08997 * 109.36696 * 212.07846 * 17 16 15 43 43 H 1.08996 * 109.36655 * 331.82791 * 17 16 15 44 44 H 1.08998 * 109.13149 * 199.01053 * 18 17 16 45 45 H 1.09005 * 108.95792 * 80.27308 * 18 17 16 46 46 H 0.96999 * 119.99995 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.45835 * 211.02657 * 28 19 18 48 48 H 1.09000 * 109.44634 * 330.95189 * 28 19 18 49 49 H 1.09007 * 109.46413 * 50.55149 * 29 8 7 50 50 H 1.08994 * 109.46516 * 170.53591 * 29 8 7 51 51 H 1.08999 * 109.58939 * 282.62231 * 30 4 3 52 52 H 1.09006 * 109.58212 * 43.04353 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5857 0.6415 0.0006 5 6 3.5413 -0.7120 -0.0003 6 7 2.2956 -1.0869 0.0000 7 6 4.7655 -1.5967 -0.0018 8 6 5.9743 -0.7419 -0.4030 9 1 5.9068 -0.4897 -1.4612 10 6 7.2433 -1.5144 -0.1498 11 8 8.0745 -1.0799 0.6191 12 7 7.4544 -2.6880 -0.7778 13 6 8.6882 -3.4387 -0.5320 14 1 8.9904 -3.3059 0.5067 15 6 8.4477 -4.8674 -0.7865 16 6 9.6437 -5.7680 -0.4933 17 6 10.5514 -5.8022 -1.6981 18 6 11.6302 -4.7049 -1.5846 19 7 11.0812 -3.4452 -1.0459 20 6 11.8127 -2.7546 -0.1169 21 1 11.3128 -2.1266 0.6058 22 6 13.1962 -2.8663 -0.1001 23 7 13.8289 -3.3634 -1.1416 24 14 14.1600 -2.3109 1.4007 25 1 13.2210 -1.7939 2.4285 26 1 14.9170 -3.4612 1.9563 27 1 15.1080 -1.2366 1.0104 28 6 9.8058 -2.9072 -1.4631 29 6 5.9834 0.5435 0.4295 30 6 4.8148 1.4382 0.0013 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5137 33 1 -0.3634 0.8899 0.5139 34 1 1.9764 2.1221 -0.0005 35 1 4.6332 -2.4063 -0.7197 36 1 4.9221 -2.0106 0.9943 37 1 6.7897 -3.0353 -1.3931 38 1 7.6100 -5.1927 -0.1696 39 1 8.1702 -4.9905 -1.8335 40 1 10.1918 -5.3771 0.3640 41 1 9.2940 -6.7766 -0.2727 42 1 11.0333 -6.7779 -1.7600 43 1 9.9624 -5.6321 -2.5993 44 1 12.0510 -4.5141 -2.5719 45 1 12.4242 -5.0556 -0.9252 46 1 14.7957 -3.4411 -1.1301 47 1 9.8357 -1.8189 -1.4094 48 1 9.6003 -3.2141 -2.4886 49 1 5.8809 0.2931 1.4855 50 1 6.9233 1.0722 0.2712 51 1 4.9999 1.8254 -1.0006 52 1 4.7128 2.2666 0.7024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034273255.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:20 Heat of formation + Delta-G solvation = 34.302930 kcal Electronic energy + Delta-G solvation = -31225.910386 eV Core-core repulsion = 27226.269754 eV Total energy + Delta-G solvation = -3999.640631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.57444 -39.97484 -37.94117 -36.40070 -34.60659 -33.65118 -33.16332 -31.75981 -30.92977 -30.20741 -29.00394 -27.42868 -25.98077 -24.58578 -24.16650 -23.44827 -22.55114 -20.74171 -20.24319 -19.88295 -19.28750 -19.17425 -17.14663 -17.01735 -16.57782 -16.17214 -15.86173 -15.37389 -14.82902 -14.67821 -14.40594 -14.33913 -14.03465 -13.92852 -13.75329 -13.50495 -13.22131 -13.09023 -12.78241 -12.67252 -12.51754 -12.49531 -12.12012 -12.01754 -11.91208 -11.56282 -11.47555 -11.34600 -11.06711 -10.91182 -10.77553 -10.55520 -10.13710 -10.12421 -10.10955 -9.74317 -9.71077 -9.63987 -9.57676 -9.53817 -8.83737 -8.39612 -8.32490 -6.61904 -5.74563 -3.18877 1.81708 2.53352 2.77012 2.87772 3.26420 3.40499 3.48705 3.53666 3.96777 4.20047 4.31214 4.34789 4.56162 4.69904 4.81775 4.85202 4.90392 5.01678 5.12004 5.16084 5.24729 5.36018 5.38874 5.44499 5.46190 5.48797 5.53184 5.61797 5.66824 5.75296 5.80623 5.84337 5.98764 6.03397 6.12185 6.14850 6.30078 6.39170 6.58726 6.59794 6.62273 6.70226 6.73970 6.82293 6.92653 6.95099 7.10167 7.44393 7.71754 7.74754 7.92643 7.92728 8.45541 8.53090 9.28724 9.93828 10.38151 11.33025 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017690 B = 0.002451 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.419468 B =11420.553824 C =12559.210687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.007 4.007 3 C -0.056 4.056 4 N -0.454 5.454 5 C 0.214 3.786 6 N -0.486 5.486 7 C -0.023 4.023 8 C -0.112 4.112 9 H 0.102 0.898 10 C 0.516 3.484 11 O -0.524 6.524 12 N -0.720 5.720 13 C 0.114 3.886 14 H 0.088 0.912 15 C -0.112 4.112 16 C -0.100 4.100 17 C -0.144 4.144 18 C 0.177 3.823 19 N -0.584 5.584 20 C -0.255 4.255 21 H 0.069 0.931 22 C 0.004 3.996 23 N -0.905 5.905 24 Si 0.898 3.102 25 H -0.276 1.276 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.159 3.841 29 C -0.116 4.116 30 C 0.103 3.897 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.173 0.827 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.392 0.608 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.025 0.975 45 H 0.073 0.927 46 H 0.252 0.748 47 H 0.047 0.953 48 H 0.030 0.970 49 H 0.082 0.918 50 H 0.104 0.896 51 H 0.087 0.913 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.434 5.321 -0.932 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.136 4.136 3 C -0.189 4.189 4 N -0.137 5.137 5 C -0.048 4.048 6 N -0.205 5.205 7 C -0.062 4.062 8 C -0.135 4.135 9 H 0.121 0.879 10 C 0.300 3.700 11 O -0.400 6.400 12 N -0.371 5.371 13 C 0.007 3.993 14 H 0.106 0.894 15 C -0.150 4.150 16 C -0.139 4.139 17 C -0.183 4.183 18 C 0.052 3.948 19 N -0.305 5.305 20 C -0.385 4.385 21 H 0.087 0.913 22 C -0.194 4.194 23 N -0.550 5.550 24 Si 0.728 3.272 25 H -0.201 1.201 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.029 3.971 29 C -0.154 4.154 30 C -0.019 4.019 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.190 0.810 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.225 0.775 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.049 0.951 49 H 0.101 0.899 50 H 0.123 0.877 51 H 0.105 0.895 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.761 4.906 -0.408 22.311 hybrid contribution 0.492 1.044 0.338 1.203 sum -21.269 5.951 -0.070 22.086 Atomic orbital electron populations 1.19991 0.87746 1.02476 1.02017 1.20795 0.96444 0.88335 1.08007 1.22297 0.82894 1.00359 1.13310 1.45404 1.06631 1.07465 1.54237 1.23085 0.94631 0.81623 1.05487 1.69943 0.99645 1.30430 1.20525 1.20119 0.86123 0.95458 1.04485 1.21456 0.93466 0.96049 1.02488 0.87945 1.20100 0.87374 0.81606 0.80925 1.90783 1.45899 1.67689 1.35587 1.46193 1.22318 1.22179 1.46367 1.21282 0.83984 0.90510 1.03486 0.89382 1.20578 0.98679 0.94912 1.00856 1.20821 0.95674 0.97094 1.00271 1.22132 0.99140 1.00169 0.96820 1.21104 0.92314 0.83053 0.98331 1.43583 1.16933 1.21511 1.48427 1.19325 0.88137 1.23969 1.07027 0.91330 1.25041 0.96844 1.00409 0.97086 1.70082 1.07476 1.49946 1.27463 0.86275 0.79971 0.77860 0.83074 1.20113 1.21641 1.21804 1.20900 0.85758 0.96879 0.93584 1.21735 0.98112 0.94589 1.00977 1.22089 0.81893 0.94443 1.03455 0.91599 0.91287 0.91533 0.81003 0.88195 0.88670 0.77466 0.93353 0.92850 0.90482 0.93379 0.92925 0.93692 0.95677 0.90897 0.93827 0.93427 0.95142 0.89910 0.87739 0.89452 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.42 36.01 0.38 -0.13 16 2 C -0.01 -0.07 7.10 -82.72 -0.59 -0.66 16 3 C -0.06 -0.52 11.55 -16.76 -0.19 -0.72 16 4 N -0.45 -4.46 3.13 -113.75 -0.36 -4.82 16 5 C 0.21 2.47 7.65 -155.24 -1.19 1.28 16 6 N -0.49 -6.42 11.24 -6.89 -0.08 -6.49 16 7 C -0.02 -0.22 5.47 -27.51 -0.15 -0.37 16 8 C -0.11 -1.11 2.55 -91.49 -0.23 -1.34 16 9 H 0.10 0.87 8.12 -51.93 -0.42 0.45 16 10 C 0.52 7.20 7.10 -10.99 -0.08 7.12 16 11 O -0.52 -9.88 15.48 5.56 0.09 -9.79 16 12 N -0.72 -9.51 4.96 -55.62 -0.28 -9.78 16 13 C 0.11 1.94 2.34 -69.78 -0.16 1.78 16 14 H 0.09 1.83 7.56 -51.93 -0.39 1.44 16 15 C -0.11 -1.67 4.55 -29.78 -0.14 -1.80 16 16 C -0.10 -1.67 5.51 -28.01 -0.15 -1.83 16 17 C -0.14 -2.58 5.71 -27.11 -0.15 -2.73 16 18 C 0.18 4.11 4.70 -2.76 -0.01 4.10 16 19 N -0.58 -14.23 2.26 -171.88 -0.39 -14.62 16 20 C -0.25 -7.01 9.43 -15.06 -0.14 -7.16 16 21 H 0.07 1.96 7.88 -52.49 -0.41 1.54 16 22 C 0.00 0.12 4.85 -17.43 -0.08 0.04 16 23 N -0.91 -26.21 11.11 55.49 0.62 -25.59 16 24 Si 0.90 22.16 29.58 -169.99 -5.03 17.13 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 C 0.16 3.27 5.24 -4.09 -0.02 3.25 16 29 C -0.12 -1.08 4.67 -26.51 -0.12 -1.20 16 30 C 0.10 0.76 6.98 -3.92 -0.03 0.73 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.10 0.83 7.94 -51.93 -0.41 0.42 16 36 H 0.10 0.97 8.11 -51.93 -0.42 0.55 16 37 H 0.39 3.88 8.30 -40.82 -0.34 3.54 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.73 7.36 -51.92 -0.38 0.34 16 40 H 0.08 1.51 7.49 -51.93 -0.39 1.12 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.75 7.32 -51.93 -0.38 0.37 16 44 H 0.03 0.64 8.02 -51.93 -0.42 0.22 16 45 H 0.07 1.90 6.42 -51.93 -0.33 1.57 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 47 H 0.05 1.08 7.98 -51.93 -0.41 0.67 16 48 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 49 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 50 H 0.10 1.03 7.79 -51.93 -0.40 0.63 16 51 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 52 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 402.86 15.07 6.07 6.07 Total: -1.00 -34.00 402.86 -11.33 -45.32 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.90 Total: 2.22 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -3.07 Total: 0.35 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.48 Total: -61.30 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.00 -11.33 -45.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034273255.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.627 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds