Wall clock time and date at job start Wed Apr 1 2020 04:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34852 * 125.96162 * 2 1 4 4 N 1.36321 * 106.68533 * 179.97438 * 3 2 1 5 5 C 1.35423 * 107.39900 * 0.05371 * 4 3 2 6 6 N 1.30089 * 108.62693 * 359.93617 * 5 4 3 7 7 C 1.51035 * 123.97924 * 179.91653 * 5 4 3 8 8 C 1.53397 * 108.21480 * 344.03423 * 7 5 4 9 9 H 1.08995 * 109.51097 * 288.84473 * 8 7 5 10 10 C 1.50701 * 109.51139 * 168.74790 * 8 7 5 11 11 O 1.21280 * 120.00084 * 240.09439 * 10 8 7 12 12 N 1.34771 * 119.99796 * 60.09718 * 10 8 7 13 13 C 1.46505 * 120.00022 * 179.97438 * 12 10 8 14 14 H 1.08995 * 109.32288 * 34.65630 * 13 12 10 15 15 C 1.47095 * 109.32492 * 154.12788 * 13 12 10 16 16 C 1.52571 * 114.32080 * 183.06237 * 15 13 12 17 17 C 1.50882 * 109.36100 * 274.98864 * 16 15 13 18 18 C 1.54304 * 110.22865 * 91.79986 * 17 16 15 19 19 N 1.47593 * 111.94390 * 319.70062 * 18 17 16 20 20 C 1.36938 * 118.64167 * 137.78363 * 19 18 17 21 21 H 1.08000 * 120.00033 * 207.69643 * 20 19 18 22 22 C 1.38815 * 120.00164 * 27.41147 * 20 19 18 23 23 N 1.31614 * 119.99783 * 16.09712 * 22 20 19 24 24 Si 1.86804 * 119.99905 * 196.09594 * 22 20 19 25 25 H 1.48501 * 109.47329 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46780 * 120.00267 * 24 22 20 27 27 H 1.48498 * 109.46890 * 239.99813 * 24 22 20 28 28 C 1.44574 * 122.71802 * 317.49581 * 19 18 17 29 29 C 1.53154 * 109.28034 * 48.79629 * 8 7 5 30 30 C 1.46472 * 127.77283 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47489 * 89.99228 * 1 2 3 32 32 H 1.09002 * 109.47146 * 209.99218 * 1 2 3 33 33 H 1.08998 * 109.47462 * 329.99733 * 1 2 3 34 34 H 1.07993 * 126.66028 * 359.96974 * 3 2 1 35 35 H 1.09001 * 109.71703 * 224.35853 * 7 5 4 36 36 H 1.08998 * 109.75332 * 103.73412 * 7 5 4 37 37 H 0.97006 * 120.00274 * 0.02562 * 12 10 8 38 38 H 1.09000 * 108.51744 * 304.32039 * 15 13 12 39 39 H 1.09008 * 108.51005 * 61.81591 * 15 13 12 40 40 H 1.09000 * 109.48946 * 34.95962 * 16 15 13 41 41 H 1.09004 * 109.48526 * 155.02892 * 16 15 13 42 42 H 1.08997 * 109.36696 * 212.07846 * 17 16 15 43 43 H 1.08996 * 109.36655 * 331.82791 * 17 16 15 44 44 H 1.08998 * 109.13149 * 199.01053 * 18 17 16 45 45 H 1.09005 * 108.95792 * 80.27308 * 18 17 16 46 46 H 0.96999 * 119.99995 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.45835 * 211.02657 * 28 19 18 48 48 H 1.09000 * 109.44634 * 330.95189 * 28 19 18 49 49 H 1.09007 * 109.46413 * 50.55149 * 29 8 7 50 50 H 1.08994 * 109.46516 * 170.53591 * 29 8 7 51 51 H 1.08999 * 109.58939 * 282.62231 * 30 4 3 52 52 H 1.09006 * 109.58212 * 43.04353 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5857 0.6415 0.0006 5 6 3.5413 -0.7120 -0.0003 6 7 2.2956 -1.0869 0.0000 7 6 4.7655 -1.5967 -0.0018 8 6 5.9743 -0.7419 -0.4030 9 1 5.9068 -0.4897 -1.4612 10 6 7.2433 -1.5144 -0.1498 11 8 8.0745 -1.0799 0.6191 12 7 7.4544 -2.6880 -0.7778 13 6 8.6882 -3.4387 -0.5320 14 1 8.9904 -3.3059 0.5067 15 6 8.4477 -4.8674 -0.7865 16 6 9.6437 -5.7680 -0.4933 17 6 10.5514 -5.8022 -1.6981 18 6 11.6302 -4.7049 -1.5846 19 7 11.0812 -3.4452 -1.0459 20 6 11.8127 -2.7546 -0.1169 21 1 11.3128 -2.1266 0.6058 22 6 13.1962 -2.8663 -0.1001 23 7 13.8289 -3.3634 -1.1416 24 14 14.1600 -2.3109 1.4007 25 1 13.2210 -1.7939 2.4285 26 1 14.9170 -3.4612 1.9563 27 1 15.1080 -1.2366 1.0104 28 6 9.8058 -2.9072 -1.4631 29 6 5.9834 0.5435 0.4295 30 6 4.8148 1.4382 0.0013 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5137 33 1 -0.3634 0.8899 0.5139 34 1 1.9764 2.1221 -0.0005 35 1 4.6332 -2.4063 -0.7197 36 1 4.9221 -2.0106 0.9943 37 1 6.7897 -3.0353 -1.3931 38 1 7.6100 -5.1927 -0.1696 39 1 8.1702 -4.9905 -1.8335 40 1 10.1918 -5.3771 0.3640 41 1 9.2940 -6.7766 -0.2727 42 1 11.0333 -6.7779 -1.7600 43 1 9.9624 -5.6321 -2.5993 44 1 12.0510 -4.5141 -2.5719 45 1 12.4242 -5.0556 -0.9252 46 1 14.7957 -3.4411 -1.1301 47 1 9.8357 -1.8189 -1.4094 48 1 9.6003 -3.2141 -2.4886 49 1 5.8809 0.2931 1.4855 50 1 6.9233 1.0722 0.2712 51 1 4.9999 1.8254 -1.0006 52 1 4.7128 2.2666 0.7024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034273255.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:18 Heat of formation + Delta-G solvation = 13.556235 kcal Electronic energy + Delta-G solvation = -31226.810030 eV Core-core repulsion = 27226.269754 eV Total energy + Delta-G solvation = -4000.540275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.32134 -41.19143 -39.38979 -37.32343 -36.20340 -34.88396 -34.33070 -32.86820 -32.44823 -31.59586 -29.83342 -28.24400 -27.79239 -25.96794 -25.19719 -24.82825 -23.71671 -21.65356 -21.57916 -21.06814 -20.71950 -20.08009 -18.58748 -18.08923 -17.87079 -17.40139 -16.83754 -16.61865 -16.40850 -16.06089 -15.58857 -15.34702 -15.16440 -14.94575 -14.75312 -14.69296 -14.61301 -14.22776 -14.08575 -13.81540 -13.80071 -13.48269 -13.12851 -13.09590 -13.01237 -12.86563 -12.79276 -12.59212 -12.45173 -12.35514 -12.21612 -12.13383 -12.03666 -11.63548 -11.44944 -11.36084 -11.13538 -10.93249 -10.79208 -10.51904 -10.46193 -10.10046 -9.11804 -8.62345 -7.88085 -5.34541 1.09276 1.39943 1.42403 1.53789 1.63811 1.85864 2.08696 2.14704 2.50437 3.16675 3.24661 3.48789 3.51099 3.59602 3.75088 3.92726 3.99029 4.07435 4.13472 4.14240 4.24891 4.29026 4.36265 4.42244 4.49138 4.52489 4.53838 4.65905 4.72947 4.76062 4.77622 4.87067 4.93261 5.01169 5.04895 5.05590 5.08402 5.14769 5.18380 5.24876 5.29811 5.37037 5.40197 5.44706 5.63771 5.68771 5.71768 5.82161 5.90051 6.23827 6.40909 6.64056 7.16331 7.18136 7.35633 7.94652 8.30099 9.16149 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017690 B = 0.002451 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.419468 B =11420.553824 C =12559.210687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.037 4.037 3 C -0.048 4.048 4 N -0.455 5.455 5 C 0.196 3.804 6 N -0.522 5.522 7 C -0.015 4.015 8 C -0.096 4.096 9 H 0.126 0.874 10 C 0.515 3.485 11 O -0.578 6.578 12 N -0.706 5.706 13 C 0.135 3.865 14 H 0.045 0.955 15 C -0.110 4.110 16 C -0.098 4.098 17 C -0.130 4.130 18 C 0.185 3.815 19 N -0.597 5.597 20 C -0.258 4.258 21 H 0.049 0.951 22 C -0.044 4.044 23 N -0.931 5.931 24 Si 0.956 3.044 25 H -0.277 1.277 26 H -0.285 1.285 27 H -0.290 1.290 28 C 0.159 3.841 29 C -0.115 4.115 30 C 0.108 3.892 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.206 0.794 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.414 0.586 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.066 0.934 44 H -0.004 1.004 45 H 0.036 0.964 46 H 0.250 0.750 47 H 0.017 0.983 48 H 0.048 0.952 49 H 0.066 0.934 50 H 0.096 0.904 51 H 0.108 0.892 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.163 5.449 -1.735 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.166 4.166 3 C -0.181 4.181 4 N -0.138 5.138 5 C -0.067 4.067 6 N -0.242 5.242 7 C -0.055 4.055 8 C -0.118 4.118 9 H 0.144 0.856 10 C 0.302 3.698 11 O -0.457 6.457 12 N -0.358 5.358 13 C 0.027 3.973 14 H 0.064 0.936 15 C -0.148 4.148 16 C -0.137 4.137 17 C -0.169 4.169 18 C 0.060 3.940 19 N -0.319 5.319 20 C -0.388 4.388 21 H 0.067 0.933 22 C -0.240 4.240 23 N -0.577 5.577 24 Si 0.785 3.215 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.217 1.217 28 C 0.030 3.970 29 C -0.153 4.153 30 C -0.013 4.013 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.222 0.778 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.252 0.748 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.014 0.986 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.035 0.965 48 H 0.067 0.933 49 H 0.085 0.915 50 H 0.115 0.885 51 H 0.126 0.874 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -24.552 5.023 -1.239 25.091 hybrid contribution 1.301 1.065 0.582 1.779 sum -23.250 6.088 -0.657 24.043 Atomic orbital electron populations 1.20043 0.86160 1.03064 1.02626 1.21366 0.97828 0.88455 1.08907 1.22836 0.82355 1.01493 1.11427 1.45581 1.07489 1.07167 1.53550 1.23227 0.94577 0.82577 1.06291 1.69890 1.00684 1.32029 1.21628 1.20069 0.85363 0.95590 1.04431 1.21363 0.90959 0.95578 1.03888 0.85627 1.20833 0.88039 0.81368 0.79607 1.90771 1.48103 1.68928 1.37897 1.45971 1.21429 1.21792 1.46625 1.20680 0.84298 0.92501 0.99802 0.93632 1.20527 0.98735 0.92407 1.03095 1.20803 0.95697 0.99179 0.97975 1.21991 0.97938 0.98522 0.98460 1.20911 0.93471 0.84145 0.95434 1.43727 1.17977 1.22107 1.48105 1.19348 0.88625 1.23647 1.07225 0.93326 1.25666 0.97596 1.01283 0.99427 1.70207 1.07362 1.51280 1.28853 0.85376 0.78525 0.77444 0.80172 1.20176 1.21100 1.21654 1.20999 0.85485 0.95157 0.95319 1.21680 0.98875 0.94715 1.00040 1.22207 0.79961 0.93921 1.05221 0.90931 0.92272 0.89372 0.77758 0.86584 0.89664 0.74846 0.90647 0.90139 0.94282 0.90023 0.91224 0.91539 0.98635 0.94560 0.94120 0.96481 0.93339 0.91534 0.88532 0.87354 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.42 71.24 0.74 -0.12 16 2 C -0.04 -0.76 7.10 41.40 0.29 -0.46 16 3 C -0.05 -0.77 11.55 83.22 0.96 0.19 16 4 N -0.46 -7.84 3.13 -513.80 -1.61 -9.45 16 5 C 0.20 4.20 7.65 138.23 1.06 5.25 16 6 N -0.52 -13.18 11.24 -175.70 -1.98 -15.16 16 7 C -0.02 -0.27 5.47 30.09 0.16 -0.11 16 8 C -0.10 -1.75 2.55 -11.35 -0.03 -1.78 16 9 H 0.13 1.77 8.12 -2.39 -0.02 1.75 16 10 C 0.52 14.21 7.10 87.66 0.62 14.83 16 11 O -0.58 -22.64 15.48 -3.03 -0.05 -22.69 16 12 N -0.71 -17.64 4.96 -448.28 -2.22 -19.86 16 13 C 0.13 4.53 2.34 43.79 0.10 4.63 16 14 H 0.05 1.96 7.56 -2.39 -0.02 1.94 16 15 C -0.11 -2.95 4.55 28.62 0.13 -2.82 16 16 C -0.10 -3.08 5.51 29.76 0.16 -2.91 16 17 C -0.13 -4.46 5.71 30.35 0.17 -4.29 16 18 C 0.19 8.83 4.70 86.61 0.41 9.24 16 19 N -0.60 -30.13 2.26 -697.70 -1.58 -31.71 16 20 C -0.26 -14.86 9.43 84.03 0.79 -14.07 16 21 H 0.05 2.95 7.88 -2.91 -0.02 2.93 16 22 C -0.04 -2.56 4.85 84.86 0.41 -2.15 16 23 N -0.93 -55.91 11.11 21.65 0.24 -55.67 16 24 Si 0.96 47.19 29.58 68.60 2.03 49.22 16 25 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 26 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 28 C 0.16 6.64 5.24 87.37 0.46 7.10 16 29 C -0.11 -2.03 4.67 30.74 0.14 -1.88 16 30 C 0.11 1.29 6.98 86.48 0.60 1.89 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.21 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.12 1.65 7.94 -2.39 -0.02 1.63 16 36 H 0.08 1.69 8.11 -2.39 -0.02 1.67 16 37 H 0.41 6.87 8.30 -92.70 -0.77 6.10 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.80 7.36 -2.38 -0.02 1.78 16 40 H 0.04 1.53 7.49 -2.39 -0.02 1.51 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.07 2.01 7.32 -2.39 -0.02 1.99 16 44 H 0.00 -0.23 8.02 -2.39 -0.02 -0.25 16 45 H 0.04 1.96 6.42 -2.38 -0.02 1.95 16 46 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 47 H 0.02 0.80 7.98 -2.39 -0.02 0.78 16 48 H 0.05 1.84 8.06 -2.39 -0.02 1.82 16 49 H 0.07 1.39 8.12 -2.38 -0.02 1.37 16 50 H 0.10 1.88 7.79 -2.39 -0.02 1.86 16 51 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -79.76 402.86 2.18 -77.59 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.14 Total: 15.18 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 7.20 Total: 12.55 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -7.14 Total: -131.85 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.05 Total: -22.69 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -79.76 2.18 -77.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034273255.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.142 kcal (2) G-P(sol) polarization free energy of solvation -79.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds