Wall clock time and date at job start Wed Apr 1 2020 04:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34851 * 125.96446 * 2 1 4 4 N 1.36318 * 106.68519 * 179.97438 * 3 2 1 5 5 C 1.35416 * 107.40328 * 0.06403 * 4 3 2 6 6 N 1.30093 * 108.62778 * 359.91244 * 5 4 3 7 7 C 1.51041 * 123.98357 * 179.89659 * 5 4 3 8 8 C 1.53406 * 108.21003 * 344.05745 * 7 5 4 9 9 H 1.09005 * 109.50238 * 288.84553 * 8 7 5 10 10 C 1.50699 * 109.51091 * 168.75016 * 8 7 5 11 11 O 1.21283 * 119.99879 * 239.99872 * 10 8 7 12 12 N 1.34776 * 120.00074 * 59.99787 * 10 8 7 13 13 C 1.46495 * 119.99999 * 180.02562 * 12 10 8 14 14 H 1.09002 * 109.35840 * 324.72403 * 13 12 10 15 15 C 1.54844 * 109.35842 * 205.00082 * 13 12 10 16 16 C 1.50128 * 110.81565 * 201.05877 * 15 13 12 17 17 C 1.52528 * 105.41212 * 97.67889 * 16 15 13 18 18 C 1.46233 * 114.28136 * 270.59627 * 17 16 15 19 19 N 1.50164 * 107.53339 * 58.40829 * 18 17 16 20 20 C 1.36935 * 120.53735 * 109.31562 * 19 18 17 21 21 H 1.08001 * 120.00277 * 156.84284 * 20 19 18 22 22 C 1.38813 * 120.00148 * 336.84475 * 20 19 18 23 23 N 1.31620 * 120.00003 * 340.40272 * 22 20 19 24 24 Si 1.86800 * 120.00241 * 160.39461 * 22 20 19 25 25 H 1.48505 * 109.46863 * 60.00432 * 24 22 20 26 26 H 1.48503 * 109.47285 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47471 * 300.00290 * 24 22 20 28 28 C 1.43429 * 118.92557 * 289.59023 * 19 18 17 29 29 C 1.53145 * 109.23957 * 48.81802 * 8 7 5 30 30 C 1.46479 * 127.77007 * 180.10832 * 4 3 2 31 31 H 1.08999 * 109.47307 * 269.99525 * 1 2 3 32 32 H 1.08996 * 109.47385 * 29.99894 * 1 2 3 33 33 H 1.09007 * 109.47344 * 150.00076 * 1 2 3 34 34 H 1.08001 * 126.65777 * 359.95967 * 3 2 1 35 35 H 1.09000 * 109.71532 * 224.38150 * 7 5 4 36 36 H 1.08998 * 109.75377 * 103.75279 * 7 5 4 37 37 H 0.97003 * 120.00068 * 0.02562 * 12 10 8 38 38 H 1.09001 * 109.20746 * 80.71616 * 15 13 12 39 39 H 1.09000 * 109.16968 * 321.37904 * 15 13 12 40 40 H 1.09008 * 110.24976 * 338.71389 * 16 15 13 41 41 H 1.08994 * 110.37281 * 216.71585 * 16 15 13 42 42 H 1.09003 * 108.52403 * 149.34970 * 17 16 15 43 43 H 1.09004 * 108.40288 * 31.74932 * 17 16 15 44 44 H 1.09001 * 109.84557 * 298.89679 * 18 17 16 45 45 H 1.09004 * 109.89875 * 177.95057 * 18 17 16 46 46 H 0.96996 * 120.00343 * 180.02562 * 23 22 20 47 47 H 1.09007 * 108.15716 * 213.28484 * 28 19 18 48 48 H 1.09002 * 108.15907 * 329.84907 * 28 19 18 49 49 H 1.09003 * 109.47079 * 50.52199 * 29 8 7 50 50 H 1.08996 * 109.46714 * 170.51167 * 29 8 7 51 51 H 1.08999 * 109.58509 * 282.62543 * 30 4 3 52 52 H 1.08997 * 109.58453 * 42.90747 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5857 0.6414 0.0006 5 6 3.5413 -0.7121 -0.0005 6 7 2.2956 -1.0870 0.0002 7 6 4.7655 -1.5969 -0.0026 8 6 5.9744 -0.7418 -0.4034 9 1 5.9065 -0.4890 -1.4616 10 6 7.2433 -1.5143 -0.1507 11 8 8.0754 -1.0794 0.6170 12 7 7.4535 -2.6887 -0.7779 13 6 8.6869 -3.4400 -0.5318 14 1 9.5119 -2.7426 -0.3867 15 6 8.9884 -4.3453 -1.7513 16 6 9.9029 -5.4719 -1.3662 17 6 8.9900 -6.6687 -1.1195 18 6 8.5087 -6.7843 0.2565 19 7 7.7700 -5.5189 0.5851 20 6 6.4080 -5.5249 0.7262 21 1 5.9218 -4.7550 1.3070 22 6 5.6521 -6.5206 0.1228 23 7 6.1560 -7.2162 -0.8745 24 14 3.9198 -6.8734 0.7262 25 1 3.0867 -5.6526 0.5806 26 1 3.3298 -7.9734 -0.0782 27 1 3.9653 -7.2740 2.1553 28 6 8.5137 -4.3026 0.7430 29 6 5.9828 0.5426 0.4306 30 6 4.8148 1.4381 0.0030 31 1 -0.3634 -0.0001 1.0276 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 1.9764 2.1222 -0.0006 35 1 4.6331 -2.4060 -0.7208 36 1 4.9222 -2.0112 0.9933 37 1 6.7882 -3.0364 -1.3922 38 1 9.4620 -3.7496 -2.5317 39 1 8.0533 -4.7564 -2.1317 40 1 10.4492 -5.2205 -0.4570 41 1 10.5992 -5.6891 -2.1761 42 1 9.5350 -7.5780 -1.3733 43 1 8.1283 -6.5866 -1.7820 44 1 9.3530 -6.9068 0.9348 45 1 7.8370 -7.6383 0.3440 46 1 5.6277 -7.9117 -1.2964 47 1 8.0154 -3.6955 1.4990 48 1 9.5049 -4.5568 1.1186 49 1 5.8799 0.2910 1.4862 50 1 6.9227 1.0717 0.2733 51 1 5.0003 1.8267 -0.9983 52 1 4.7116 2.2669 0.7033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034273259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:27 Heat of formation + Delta-G solvation = 41.082892 kcal Electronic energy + Delta-G solvation = -32315.743239 eV Core-core repulsion = 28316.396609 eV Total energy + Delta-G solvation = -3999.346630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.33060 -39.72479 -37.86513 -36.24079 -34.23604 -33.41728 -33.00932 -31.53985 -30.98051 -30.00200 -28.79607 -27.22989 -26.07627 -24.41482 -23.95862 -23.16239 -22.47044 -20.56651 -20.09724 -19.44886 -19.13944 -19.04708 -16.91364 -16.82190 -16.59267 -15.90793 -15.51048 -15.22275 -14.78854 -14.54573 -14.22334 -14.15422 -13.89413 -13.71825 -13.62116 -13.46455 -13.16022 -12.89857 -12.49443 -12.36425 -12.33288 -12.21400 -11.82490 -11.79157 -11.66962 -11.54734 -11.27278 -11.21365 -11.13351 -10.77009 -10.70496 -10.46355 -10.10559 -9.94785 -9.82086 -9.72309 -9.47598 -9.46474 -9.33691 -9.24560 -8.61662 -8.30788 -8.14742 -6.68527 -5.78688 -3.17284 2.04744 2.74405 2.94402 3.15531 3.45343 3.49100 3.54633 3.57835 4.23429 4.39312 4.51099 4.53851 4.61983 4.88055 5.01174 5.05466 5.12217 5.23844 5.30848 5.33677 5.39325 5.42283 5.49835 5.63786 5.67561 5.68885 5.72691 5.81776 5.94167 5.97081 6.04699 6.08686 6.12148 6.21601 6.25362 6.35243 6.44702 6.51429 6.62051 6.82971 6.84947 6.90546 6.97841 7.02638 7.19730 7.20213 7.27270 7.62199 7.75616 7.99520 8.02986 8.21513 8.43128 8.65129 9.20219 9.87718 10.40755 11.27708 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.004004 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.613057 B = 6991.735354 C = 9055.329442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.005 4.005 3 C -0.062 4.062 4 N -0.458 5.458 5 C 0.222 3.778 6 N -0.482 5.482 7 C -0.025 4.025 8 C -0.110 4.110 9 H 0.098 0.902 10 C 0.519 3.481 11 O -0.554 6.554 12 N -0.696 5.696 13 C 0.116 3.884 14 H 0.071 0.929 15 C -0.110 4.110 16 C -0.112 4.112 17 C -0.130 4.130 18 C 0.165 3.835 19 N -0.582 5.582 20 C -0.242 4.242 21 H 0.064 0.936 22 C 0.006 3.994 23 N -0.900 5.900 24 Si 0.890 3.110 25 H -0.278 1.278 26 H -0.293 1.293 27 H -0.287 1.287 28 C 0.152 3.848 29 C -0.114 4.114 30 C 0.105 3.895 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.171 0.829 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.402 0.598 38 H 0.037 0.963 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.024 0.976 43 H 0.101 0.899 44 H 0.004 0.996 45 H 0.089 0.911 46 H 0.252 0.748 47 H 0.037 0.963 48 H 0.035 0.965 49 H 0.082 0.918 50 H 0.099 0.901 51 H 0.084 0.916 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 15.366 -2.504 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.135 4.135 3 C -0.194 4.194 4 N -0.141 5.141 5 C -0.041 4.041 6 N -0.201 5.201 7 C -0.064 4.064 8 C -0.133 4.133 9 H 0.117 0.883 10 C 0.304 3.696 11 O -0.433 6.433 12 N -0.344 5.344 13 C 0.009 3.991 14 H 0.089 0.911 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.169 4.169 18 C 0.041 3.959 19 N -0.303 5.303 20 C -0.372 4.372 21 H 0.081 0.919 22 C -0.192 4.192 23 N -0.545 5.545 24 Si 0.720 3.280 25 H -0.203 1.203 26 H -0.219 1.219 27 H -0.214 1.214 28 C 0.022 3.978 29 C -0.152 4.152 30 C -0.017 4.017 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.188 0.812 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.236 0.764 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.119 0.881 44 H 0.022 0.978 45 H 0.107 0.893 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.053 0.947 49 H 0.101 0.899 50 H 0.118 0.882 51 H 0.102 0.898 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.751 14.796 -2.036 14.954 hybrid contribution -1.061 0.556 -0.190 1.213 sum -1.812 15.351 -2.226 15.617 Atomic orbital electron populations 1.19987 0.87902 1.02381 1.01966 1.20807 0.96432 0.88387 1.07826 1.22220 0.82997 1.00152 1.14076 1.45407 1.06450 1.07474 1.54813 1.23208 0.94789 0.81351 1.04713 1.70027 0.99740 1.30184 1.20175 1.20165 0.85556 0.95296 1.05373 1.21410 0.93954 0.95883 1.02009 0.88347 1.20043 0.87282 0.81542 0.80748 1.90659 1.46466 1.69609 1.36539 1.46025 1.22315 1.20460 1.45626 1.22833 0.85049 0.92756 0.98491 0.91142 1.21666 1.00799 0.96430 0.95881 1.20972 0.97232 0.96860 0.99966 1.21010 0.99224 0.94373 1.02264 1.20166 0.93182 0.90690 0.91845 1.44233 1.03246 1.01260 1.81571 1.19066 0.81955 1.11413 1.24736 0.91860 1.24823 0.97363 1.00743 0.96238 1.69946 1.37113 1.25441 1.21977 0.86543 0.85068 0.78093 0.78329 1.20335 1.21869 1.21385 1.20774 0.95172 0.88467 0.93397 1.21700 0.97685 0.94634 1.01153 1.22027 0.82227 0.94379 1.03082 0.91663 0.91651 0.91236 0.81162 0.87547 0.88304 0.76362 0.94383 0.90117 0.92488 0.93323 0.95749 0.88071 0.97785 0.89302 0.93760 0.94509 0.94672 0.89941 0.88243 0.89789 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.42 36.00 0.38 -0.33 16 2 C -0.01 -0.08 7.10 -82.72 -0.59 -0.66 16 3 C -0.06 -0.74 11.55 -16.76 -0.19 -0.93 16 4 N -0.46 -5.70 3.13 -113.75 -0.36 -6.05 16 5 C 0.22 3.43 7.65 -155.24 -1.19 2.24 16 6 N -0.48 -8.45 11.24 -6.88 -0.08 -8.53 16 7 C -0.02 -0.36 5.46 -27.51 -0.15 -0.51 16 8 C -0.11 -1.39 2.55 -91.49 -0.23 -1.62 16 9 H 0.10 1.07 8.12 -51.93 -0.42 0.65 16 10 C 0.52 8.19 6.96 -10.99 -0.08 8.11 16 11 O -0.55 -10.28 15.49 5.55 0.09 -10.19 16 12 N -0.70 -11.42 4.99 -51.90 -0.26 -11.68 16 13 C 0.12 2.06 2.92 -65.96 -0.19 1.87 16 14 H 0.07 1.25 7.58 -51.93 -0.39 0.86 16 15 C -0.11 -1.88 5.23 -27.19 -0.14 -2.02 16 16 C -0.11 -1.93 5.76 -28.40 -0.16 -2.09 16 17 C -0.13 -2.62 5.02 -30.19 -0.15 -2.77 16 18 C 0.16 3.66 5.24 -5.21 -0.03 3.64 16 19 N -0.58 -13.34 2.60 -175.09 -0.46 -13.79 16 20 C -0.24 -6.08 9.63 -15.06 -0.14 -6.23 16 21 H 0.06 1.64 7.89 -52.49 -0.41 1.22 16 22 C 0.01 0.16 4.91 -17.43 -0.09 0.08 16 23 N -0.90 -23.43 9.40 55.49 0.52 -22.91 16 24 Si 0.89 21.26 29.60 -169.99 -5.03 16.23 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 C 0.15 3.11 4.78 -4.67 -0.02 3.08 16 29 C -0.11 -1.23 4.67 -26.52 -0.12 -1.35 16 30 C 0.11 0.94 6.98 -3.92 -0.03 0.91 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.17 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.11 1.64 7.94 -51.93 -0.41 1.23 16 36 H 0.10 1.61 8.11 -51.93 -0.42 1.19 16 37 H 0.40 6.47 8.15 -40.82 -0.33 6.13 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.58 6.58 -51.93 -0.34 1.24 16 40 H 0.06 0.97 6.29 -51.92 -0.33 0.65 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 2.33 5.26 -51.93 -0.27 2.06 16 44 H 0.00 0.09 8.12 -51.93 -0.42 -0.34 16 45 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 46 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 47 H 0.04 0.82 7.83 -51.92 -0.41 0.41 16 48 H 0.04 0.69 6.89 -51.93 -0.36 0.33 16 49 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 50 H 0.10 1.01 7.79 -51.93 -0.40 0.61 16 51 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 396.83 15.07 5.98 5.98 Total: -1.00 -30.23 396.83 -11.33 -41.55 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -8.60 Total: 7.98 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -3.13 Total: 1.41 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.63 Total: -62.96 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.23 -11.33 -41.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034273259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.636 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds