Wall clock time and date at job start Wed Apr 1 2020 04:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34667 * 125.98973 * 2 1 4 4 N 1.36885 * 106.81684 * 180.12097 * 3 2 1 5 5 C 1.46498 * 126.39712 * 179.84680 * 4 3 2 6 6 C 1.53001 * 109.47424 * 50.40489 * 5 4 3 7 7 C 1.53004 * 109.46959 * 290.40442 * 5 4 3 8 8 C 1.50697 * 109.47067 * 170.40349 * 5 4 3 9 9 O 1.21287 * 119.99993 * 127.12751 * 8 5 4 10 10 N 1.34772 * 120.00259 * 307.13790 * 8 5 4 11 11 C 1.46894 * 120.46823 * 176.52755 * 10 8 5 12 12 C 1.53353 * 108.74215 * 124.33574 * 11 10 8 13 13 C 1.52557 * 109.12676 * 52.26802 * 12 11 10 14 14 C 1.52958 * 114.06575 * 75.53861 * 13 12 11 15 15 N 1.47161 * 87.85477 * 139.44212 * 14 13 12 16 16 C 1.36938 * 136.00459 * 153.33464 * 15 14 13 17 17 H 1.08004 * 119.99639 * 0.02562 * 16 15 14 18 18 C 1.38806 * 120.00193 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00127 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00152 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47159 * 89.99851 * 20 18 16 22 22 H 1.48495 * 109.47235 * 210.00650 * 20 18 16 23 23 H 1.48499 * 109.46825 * 330.00447 * 20 18 16 24 24 C 1.47168 * 87.99795 * 333.33834 * 15 14 13 25 25 C 1.52557 * 113.42816 * 302.66605 * 13 12 11 26 26 C 1.46891 * 120.46173 * 356.49868 * 10 8 5 27 27 C 1.35044 * 107.20206 * 359.58299 * 4 3 2 28 28 N 1.30495 * 108.70016 * 0.26227 * 27 4 3 29 29 H 1.09007 * 109.47215 * 270.33127 * 1 2 3 30 30 H 1.09001 * 109.47406 * 30.32628 * 1 2 3 31 31 H 1.08995 * 109.47620 * 150.32687 * 1 2 3 32 32 H 1.08001 * 126.59320 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46929 * 189.66375 * 6 5 4 34 34 H 1.08999 * 109.46477 * 309.65953 * 6 5 4 35 35 H 1.08993 * 109.46904 * 69.65652 * 6 5 4 36 36 H 1.09001 * 109.46676 * 295.58463 * 7 5 4 37 37 H 1.08997 * 109.46969 * 55.58330 * 7 5 4 38 38 H 1.08997 * 109.47202 * 175.58836 * 7 5 4 39 39 H 1.09000 * 109.58738 * 4.56566 * 11 10 8 40 40 H 1.09000 * 109.59262 * 244.11795 * 11 10 8 41 41 H 1.08999 * 109.53433 * 292.36790 * 12 11 10 42 42 H 1.09006 * 109.52961 * 172.15600 * 12 11 10 43 43 H 1.08994 * 113.49021 * 24.69501 * 14 13 12 44 44 H 1.09001 * 113.48987 * 254.19219 * 14 13 12 45 45 H 0.97005 * 119.99976 * 179.97438 * 19 18 16 46 46 H 1.09005 * 113.49088 * 141.41502 * 24 15 14 47 47 H 1.09007 * 113.48733 * 271.92020 * 24 15 14 48 48 H 1.09004 * 109.52483 * 177.21547 * 25 13 12 49 49 H 1.09003 * 109.52731 * 297.42029 * 25 13 12 50 50 H 1.08996 * 109.58769 * 355.43274 * 26 10 8 51 51 H 1.09008 * 109.58762 * 115.87026 * 26 10 8 52 52 H 1.08006 * 125.64717 * 180.29824 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6401 -0.0028 5 6 4.7996 1.4684 -0.0070 6 6 4.7034 2.5165 1.1035 7 6 4.9324 2.1698 -1.3602 8 6 6.0066 0.5972 0.2279 9 8 6.9443 0.6402 -0.5402 10 7 6.0441 -0.2299 1.2913 11 6 7.1815 -1.1384 1.4886 12 6 7.7806 -0.8835 2.8770 13 6 6.6708 -0.9553 3.9213 14 6 6.2086 -2.3773 4.2436 15 7 6.1418 -1.9759 5.6578 16 6 5.4325 -2.3693 6.7611 17 1 4.7123 -3.1703 6.6826 18 6 5.6398 -1.7392 7.9804 19 7 6.5178 -0.7633 8.0762 20 14 4.6726 -2.2764 9.4856 21 1 5.4160 -3.3486 10.1950 22 1 4.4879 -1.1171 10.3950 23 1 3.3451 -2.7907 9.0634 24 6 7.1719 -0.9660 5.3662 25 6 5.5314 0.0260 3.6639 26 6 4.9485 -0.2350 2.2698 27 6 3.5449 -0.7096 0.0050 28 7 2.2952 -1.0852 0.0066 29 1 -0.3634 0.0059 1.0277 30 1 -0.3634 0.8870 -0.5189 31 1 -0.3634 -0.8928 -0.5087 32 1 1.9751 2.1201 -0.0004 33 1 5.5139 3.2370 0.9942 34 1 3.7461 3.0331 1.0334 35 1 4.7814 2.0261 2.0737 36 1 5.0796 1.4251 -2.1425 37 1 4.0251 2.7379 -1.5655 38 1 5.7870 2.8459 -1.3368 39 1 7.9361 -0.9504 0.7248 40 1 6.8400 -2.1714 1.4218 41 1 8.2394 0.1050 2.9002 42 1 8.5340 -1.6410 3.0935 43 1 6.9649 -3.1360 4.0426 44 1 5.2372 -2.6258 3.8161 45 1 6.6623 -0.3228 8.9282 46 1 7.0145 -0.0217 5.8876 47 1 8.1900 -1.3413 5.4702 48 1 4.7543 -0.1127 4.4156 49 1 5.9110 1.0466 3.7150 50 1 4.2324 0.5480 2.0206 51 1 4.4517 -1.2052 2.2571 52 1 4.4004 -1.3688 0.0098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035730500.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:19 Heat of formation + Delta-G solvation = 105.609673 kcal Electronic energy + Delta-G solvation = -32841.605794 eV Core-core repulsion = 28845.057255 eV Total energy + Delta-G solvation = -3996.548539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.75171 -40.53725 -39.11638 -36.17052 -36.05693 -32.59823 -32.01396 -31.32905 -30.53687 -30.52642 -27.84956 -27.34597 -26.80339 -25.04677 -24.36705 -23.36360 -22.86817 -21.93305 -20.97839 -20.28683 -19.35195 -18.32066 -17.30291 -16.73259 -16.45730 -15.91695 -15.51184 -15.15771 -14.92371 -14.76454 -14.61157 -14.15059 -14.11170 -13.83516 -13.73076 -13.57237 -13.26019 -13.11363 -12.84907 -12.82572 -12.62107 -12.52377 -12.30639 -12.26371 -12.14929 -12.10687 -11.72694 -11.63812 -11.12569 -11.07296 -10.92264 -10.87123 -10.49042 -10.33253 -10.07787 -9.95849 -9.76505 -9.68750 -9.59583 -9.27194 -8.82620 -8.63516 -8.40091 -6.89252 -5.79025 -3.10917 1.88959 1.92917 2.67902 2.76696 3.03808 3.37339 3.42734 3.44190 3.83249 4.27678 4.37262 4.43791 4.49625 4.62634 4.85881 4.95004 5.01449 5.06874 5.08971 5.16661 5.22642 5.24685 5.29472 5.32458 5.35870 5.39766 5.52394 5.57307 5.60978 5.62901 5.71612 5.75570 5.76274 5.80903 5.88109 5.90397 6.03409 6.11737 6.20112 6.28618 6.36380 6.51238 6.55634 6.65255 6.72602 6.74857 6.99518 7.17807 7.18695 7.31380 7.53359 7.80949 7.95566 7.99870 9.02013 9.68606 10.62762 11.38348 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.003479 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.003446 B = 8045.340388 C = 9350.459210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.001 3.999 3 C -0.053 4.053 4 N -0.451 5.451 5 C 0.146 3.854 6 C -0.171 4.171 7 C -0.139 4.139 8 C 0.515 3.485 9 O -0.528 6.528 10 N -0.595 5.595 11 C 0.112 3.888 12 C -0.113 4.113 13 C -0.116 4.116 14 C 0.127 3.873 15 N -0.607 5.607 16 C -0.216 4.216 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.167 3.833 25 C -0.093 4.093 26 C 0.091 3.909 27 C 0.192 3.808 28 N -0.486 5.486 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.172 0.828 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.031 0.969 44 H 0.037 0.963 45 H 0.253 0.747 46 H 0.070 0.930 47 H 0.024 0.976 48 H 0.090 0.910 49 H 0.060 0.940 50 H 0.090 0.910 51 H 0.079 0.921 52 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.022 7.759 -18.543 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.128 4.128 3 C -0.185 4.185 4 N -0.137 5.137 5 C 0.058 3.942 6 C -0.229 4.229 7 C -0.198 4.198 8 C 0.300 3.700 9 O -0.403 6.403 10 N -0.328 5.328 11 C -0.010 4.010 12 C -0.151 4.151 13 C -0.117 4.117 14 C 0.001 3.999 15 N -0.332 5.332 16 C -0.344 4.344 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.567 5.567 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.041 3.959 25 C -0.131 4.131 26 C -0.031 4.031 27 C -0.090 4.090 28 N -0.204 5.204 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.189 0.811 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.088 0.912 47 H 0.041 0.959 48 H 0.108 0.892 49 H 0.078 0.922 50 H 0.108 0.892 51 H 0.097 0.903 52 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.782 7.042 -18.569 20.427 hybrid contribution 0.071 0.421 1.129 1.207 sum -4.711 7.464 -17.440 19.546 Atomic orbital electron populations 1.20012 0.87753 1.02382 1.02265 1.20724 0.96473 0.88466 1.07143 1.22287 0.82526 1.00443 1.13234 1.45668 1.05792 1.07362 1.54860 1.21077 0.81820 0.91502 0.99802 1.22508 1.04466 0.98069 0.97827 1.21983 1.03241 1.01024 0.93503 1.20088 0.88021 0.80370 0.81481 1.90726 1.37178 1.66293 1.46140 1.48252 1.22534 1.38258 1.23711 1.21753 0.88129 0.92594 0.98524 1.21722 0.97938 1.02337 0.93150 1.22076 0.95446 0.97237 0.96935 1.22396 0.97524 0.93080 0.86930 1.45575 1.43402 1.39877 1.04378 1.18932 1.14765 1.14899 0.85754 0.90235 1.24759 0.99389 0.98766 0.97429 1.69828 1.36748 1.25664 1.24492 0.86149 0.79405 0.77516 0.82905 1.21648 1.21649 1.20572 1.22028 0.91247 0.95068 0.87509 1.21426 0.98557 0.98284 0.94825 1.22439 0.88497 1.03322 0.88879 1.24984 0.97162 0.81902 1.04974 1.70245 1.00108 1.30289 1.19789 0.91339 0.91582 0.91309 0.81058 0.89648 0.90179 0.89558 0.91092 0.91096 0.89776 0.89166 0.90927 0.91747 0.90502 0.95160 0.94480 0.93721 0.91217 0.95854 0.89151 0.92169 0.89177 0.90326 0.78464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.42 36.01 0.38 -0.22 16 2 C 0.00 0.01 7.09 -82.86 -0.59 -0.58 16 3 C -0.05 -0.53 10.39 -16.56 -0.17 -0.70 16 4 N -0.45 -4.79 1.46 -105.82 -0.15 -4.95 16 5 C 0.15 1.44 0.79 -132.97 -0.10 1.33 16 6 C -0.17 -1.44 8.08 37.16 0.30 -1.14 16 7 C -0.14 -1.21 7.97 37.16 0.30 -0.91 16 8 C 0.52 6.36 5.70 -10.99 -0.06 6.30 16 9 O -0.53 -7.82 15.40 5.55 0.09 -7.74 16 10 N -0.60 -7.29 2.10 -172.63 -0.36 -7.65 16 11 C 0.11 1.38 6.35 -3.64 -0.02 1.35 16 12 C -0.11 -1.56 5.30 -26.77 -0.14 -1.70 16 13 C -0.12 -1.96 0.84 -155.02 -0.13 -2.09 16 14 C 0.13 2.47 7.63 -8.21 -0.06 2.40 16 15 N -0.61 -14.98 3.55 -184.67 -0.66 -15.63 16 16 C -0.22 -5.94 10.74 -15.06 -0.16 -6.10 16 17 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -26.80 11.51 55.49 0.64 -26.16 16 20 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.17 3.74 6.54 -8.22 -0.05 3.69 16 25 C -0.09 -1.45 5.07 -26.78 -0.14 -1.59 16 26 C 0.09 1.16 3.37 -3.65 -0.01 1.15 16 27 C 0.19 2.42 8.76 -90.38 -0.79 1.62 16 28 N -0.49 -6.83 11.25 -10.87 -0.12 -6.96 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.17 1.19 7.72 -52.49 -0.41 0.78 16 33 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.08 0.54 7.24 -51.93 -0.38 0.16 16 35 H 0.09 0.85 4.70 -51.93 -0.24 0.61 16 36 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 38 H 0.08 0.70 8.11 -51.93 -0.42 0.27 16 39 H 0.09 1.12 6.97 -51.93 -0.36 0.76 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 43 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 44 H 0.04 0.70 7.53 -51.93 -0.39 0.31 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.07 1.75 7.11 -51.93 -0.37 1.38 16 47 H 0.02 0.54 8.10 -51.93 -0.42 0.12 16 48 H 0.09 1.69 7.95 -51.93 -0.41 1.27 16 49 H 0.06 0.90 7.69 -51.93 -0.40 0.50 16 50 H 0.09 1.08 3.38 -51.93 -0.18 0.91 16 51 H 0.08 1.10 6.78 -51.92 -0.35 0.75 16 52 H 0.20 2.43 6.58 -52.48 -0.35 2.08 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -32.32 393.76 -9.65 -41.97 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.43 Total: 1.77 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -1.56 Total: 2.53 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.66 Total: -61.35 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.09 Total: -7.74 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.32 -9.65 -41.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035730500.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.581 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds